Wall clock time and date at job start Tue Mar 31 2020 22:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48498 * 109.47559 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46709 * 300.00144 * 3 2 1 6 6 H 1.48498 * 109.46929 * 59.99417 * 3 2 1 7 7 C 1.38954 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00535 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00090 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00064 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99997 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47248 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00258 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47350 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.91343 * 308.89903 * 15 14 13 17 17 C 1.55157 * 111.00585 * 184.99800 * 15 14 13 18 18 C 1.54321 * 103.10033 * 206.50978 * 17 15 14 19 19 N 1.47018 * 107.27524 * 22.10414 * 18 17 15 20 20 C 1.34771 * 125.65276 * 181.09422 * 19 18 17 21 21 O 1.21619 * 120.00367 * 179.97438 * 20 19 18 22 22 C 1.47174 * 119.99961 * 359.97284 * 20 19 18 23 23 C 1.38245 * 128.47705 * 179.97438 * 22 20 19 24 24 N 1.31241 * 111.88576 * 180.02562 * 23 22 20 25 25 N 1.27337 * 120.04498 * 0.02562 * 24 23 22 26 26 S 1.56638 * 109.73427 * 359.69136 * 25 24 23 27 27 C 1.47434 * 108.70129 * 1.05955 * 19 18 17 28 28 H 0.96999 * 120.00262 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00056 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47047 * 60.00018 * 12 10 9 31 31 H 1.09000 * 109.47199 * 299.99616 * 12 10 9 32 32 H 1.00900 * 110.99437 * 303.95336 * 13 12 10 33 33 H 1.08994 * 109.47046 * 59.99319 * 14 13 12 34 34 H 1.09000 * 109.46730 * 299.99760 * 14 13 12 35 35 H 1.09002 * 110.72219 * 88.05675 * 17 15 14 36 36 H 1.09003 * 110.71618 * 324.96287 * 17 15 14 37 37 H 1.09008 * 109.88104 * 141.52028 * 18 17 15 38 38 H 1.08999 * 109.88234 * 262.52704 * 18 17 15 39 39 H 1.07994 * 124.05418 * 359.97438 * 23 22 20 40 40 H 1.09000 * 110.36877 * 94.71035 * 27 19 18 41 41 H 1.09001 * 110.36429 * 217.03387 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9796 0.0039 14 6 1.4980 -7.2709 0.0039 15 6 2.5229 -8.4069 0.0051 16 1 3.2588 -8.2678 -0.7869 17 6 1.8242 -9.7865 -0.1211 18 6 2.8205 -10.7469 0.5619 19 7 3.6582 -9.9399 1.4610 20 6 4.6658 -10.4062 2.2251 21 8 5.2945 -9.6437 2.9340 22 6 5.0051 -11.8380 2.2019 23 6 5.9939 -12.4992 2.9063 24 7 6.0106 -13.7837 2.6374 25 7 5.1750 -14.2728 1.8104 26 16 4.2416 -13.1379 1.2679 27 6 3.2142 -8.5360 1.3877 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6174 -4.9213 -0.8880 31 1 0.6168 -4.9201 0.8920 32 1 2.8337 -5.9131 -0.7771 33 1 0.8741 -7.3458 -0.8866 34 1 0.8722 -7.3448 0.8933 35 1 1.6863 -10.0546 -1.1686 36 1 0.8689 -9.7843 0.4039 37 1 2.2773 -11.4978 1.1358 38 1 3.4415 -11.2332 -0.1903 39 1 6.6718 -12.0165 3.5946 40 1 2.5035 -8.3207 2.1856 41 1 4.0700 -7.8638 1.4493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752930026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:34 Heat of formation + Delta-G solvation = -15.734649 kcal Electronic energy + Delta-G solvation = -25633.615274 eV Core-core repulsion = 21675.235711 eV Total energy + Delta-G solvation = -3958.379564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93832 -41.13008 -40.12528 -38.87485 -36.65804 -35.81285 -33.67459 -33.24800 -32.70663 -30.47927 -29.18566 -28.22710 -26.62516 -25.31815 -23.68648 -23.40576 -21.57157 -20.95176 -20.82422 -20.13572 -19.87615 -18.32853 -17.92347 -17.40478 -17.21893 -16.90662 -16.66144 -16.38346 -15.95807 -15.84974 -15.58967 -15.25360 -15.05576 -14.62312 -14.29435 -14.14475 -13.95409 -13.72538 -13.57463 -13.45431 -13.13401 -12.97770 -12.81510 -12.65392 -12.41079 -12.22272 -12.11245 -11.91263 -11.59891 -11.50550 -11.47101 -11.22248 -11.12615 -10.89842 -10.32690 -10.00216 -9.86095 -9.23904 -8.46481 -5.94732 -1.39589 -0.29028 0.40714 0.82950 1.36625 1.42105 1.55988 1.63660 1.77292 2.07572 2.29685 2.86444 2.95354 3.21297 3.27434 3.52765 3.55370 3.60693 3.79506 3.94212 4.18765 4.33433 4.36330 4.46569 4.52711 4.54058 4.60559 4.64192 4.75746 4.84591 4.89676 4.98356 5.06350 5.19308 5.39075 5.41918 5.91807 6.14313 6.19771 6.46604 6.54187 6.61595 6.76784 7.14078 7.58304 8.14164 8.71051 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.001746 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.124933 B =16030.405039 C =16744.359973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.690 5.690 14 C 0.072 3.928 15 C -0.090 4.090 16 H 0.086 0.914 17 C -0.109 4.109 18 C 0.072 3.928 19 N -0.608 5.608 20 C 0.608 3.392 21 O -0.564 6.564 22 C -0.304 4.304 23 C 0.073 3.927 24 N -0.277 5.277 25 N -0.302 5.302 26 S 0.528 5.472 27 C 0.118 3.882 28 H 0.277 0.723 29 H 0.397 0.603 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.344 0.656 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.224 0.776 40 H 0.074 0.926 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -28.367 -2.087 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.065 4.065 13 N -0.323 5.323 14 C -0.057 4.057 15 C -0.110 4.110 16 H 0.104 0.896 17 C -0.147 4.147 18 C -0.051 4.051 19 N -0.340 5.340 20 C 0.395 3.605 21 O -0.444 6.444 22 C -0.445 4.445 23 C -0.095 4.095 24 N -0.140 5.140 25 N -0.283 5.283 26 S 0.663 5.337 27 C -0.003 4.003 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.241 0.759 40 H 0.093 0.907 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.674 -29.601 -1.791 29.703 hybrid contribution 0.575 2.348 0.216 2.427 sum -1.099 -27.253 -1.575 27.321 Atomic orbital electron populations 1.69664 1.06718 1.29190 1.50455 1.26003 0.96554 1.02310 0.96366 0.84896 0.77984 0.77270 0.78341 1.20002 1.19468 1.19697 1.19684 0.92643 0.84171 1.49811 0.90538 1.41945 1.09352 1.04722 1.65166 1.21041 0.88293 0.86384 0.81977 1.90502 1.16079 1.88033 1.56616 1.21509 0.93924 0.87789 1.03260 1.60076 1.19259 1.01279 1.51640 1.22005 0.95010 0.86157 1.02487 1.22344 0.97692 0.95373 0.95552 0.89613 1.22690 0.97893 0.90573 1.03540 1.22696 0.93700 0.95377 0.93351 1.48439 1.31944 1.11240 1.42391 1.16311 0.79619 0.84699 0.79862 1.90874 1.52839 1.57956 1.42691 1.27867 1.06404 1.00618 1.09576 1.24705 0.97808 0.87643 0.99383 1.70847 1.18186 1.12989 1.11930 1.78506 1.08680 1.28230 1.12846 1.82263 1.28699 0.90291 1.32440 1.22336 0.98998 0.80181 0.98826 0.91313 0.76896 0.91102 0.87786 0.83774 0.92203 0.89737 0.86519 0.88074 0.88460 0.89010 0.75939 0.90732 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -29.01 5.29 -306.99 -1.62 -30.64 16 10 C 0.44 20.20 7.82 87.66 0.69 20.89 16 11 O -0.63 -34.50 15.78 -3.06 -0.05 -34.55 16 12 C 0.07 2.10 6.17 85.56 0.53 2.63 16 13 N -0.69 -18.96 6.08 -517.95 -3.15 -22.10 16 14 C 0.07 1.16 5.15 86.30 0.44 1.60 16 15 C -0.09 -1.20 3.20 -9.33 -0.03 -1.23 16 16 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 17 C -0.11 -0.53 6.41 31.78 0.20 -0.33 16 18 C 0.07 0.50 5.26 86.73 0.46 0.95 16 19 N -0.61 -10.25 3.33 -815.52 -2.71 -12.96 16 20 C 0.61 13.36 7.84 86.59 0.68 14.04 16 21 O -0.56 -17.69 17.23 -4.09 -0.07 -17.76 16 22 C -0.30 -5.01 6.67 24.62 0.16 -4.85 16 23 C 0.07 1.26 11.55 84.78 0.98 2.24 16 24 N -0.28 -5.42 11.54 -57.87 -0.67 -6.08 16 25 N -0.30 -5.20 12.51 37.02 0.46 -4.74 16 26 S 0.53 5.21 19.63 -56.49 -1.11 4.10 16 27 C 0.12 2.35 6.34 86.93 0.55 2.91 16 28 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.34 10.11 8.43 -89.69 -0.76 9.36 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.25 7.97 -2.39 -0.02 1.23 16 35 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.10 0.26 8.04 -2.39 -0.02 0.24 16 37 H 0.10 0.29 7.17 -2.38 -0.02 0.27 16 38 H 0.09 0.35 7.03 -2.39 -0.02 0.33 16 39 H 0.22 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.07 1.51 7.91 -2.39 -0.02 1.49 16 41 H 0.05 1.53 8.04 -2.39 -0.02 1.51 16 Total: -1.00 -79.28 363.60 -1.06 -80.34 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.39 Total: 27.69 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 5.94 Total: 20.54 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -7.41 Total: -125.33 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.12 Total: -52.31 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.11 Total: 4.10 kcal Total: -79.28 -1.06 -80.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752930026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.605 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds