Wall clock time and date at job start Tue Mar 31 2020 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 119.99714 * 2 1 4 4 H 1.48507 * 109.46974 * 240.00119 * 3 2 1 5 5 H 1.48499 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47492 * 119.99868 * 3 2 1 7 7 C 1.38948 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99920 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99755 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47223 * 179.97438 * 12 10 9 14 14 C 1.47848 * 110.99770 * 69.15046 * 13 12 10 15 15 C 1.54912 * 104.79318 * 146.36508 * 14 13 12 16 16 C 1.55142 * 101.65289 * 322.93474 * 15 14 13 17 17 H 1.09004 * 110.85503 * 277.20234 * 16 15 14 18 18 C 1.52996 * 110.70820 * 154.03649 * 16 15 14 19 19 N 1.46498 * 109.47059 * 71.39552 * 18 16 15 20 20 C 1.34777 * 119.99828 * 179.72339 * 19 18 16 21 21 O 1.21603 * 119.99956 * 0.28069 * 20 19 18 22 22 C 1.47453 * 120.00004 * 180.27978 * 20 19 18 23 23 C 1.37981 * 124.15372 * 179.72938 * 22 20 19 24 24 S 1.72106 * 104.03215 * 179.89842 * 23 22 20 25 25 N 1.56405 * 96.15003 * 0.32311 * 24 23 22 26 26 N 1.27409 * 109.87870 * 359.80206 * 25 24 23 27 27 C 1.47437 * 111.00023 * 189.99900 * 13 12 10 28 28 H 0.97003 * 120.00730 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00142 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46891 * 59.99571 * 12 10 9 31 31 H 1.09003 * 109.46549 * 299.99847 * 12 10 9 32 32 H 1.08997 * 110.37691 * 265.19034 * 14 13 12 33 33 H 1.08998 * 110.37277 * 27.43268 * 14 13 12 34 34 H 1.08998 * 110.99104 * 204.84258 * 15 14 13 35 35 H 1.08997 * 110.98722 * 81.01918 * 15 14 13 36 36 H 1.09004 * 109.47066 * 311.39820 * 18 16 15 37 37 H 1.08994 * 109.46974 * 191.39967 * 18 16 15 38 38 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 39 39 H 1.08005 * 127.98481 * 359.96718 * 23 22 20 40 40 H 1.09002 * 109.88929 * 117.34017 * 27 13 12 41 41 H 1.08998 * 110.02228 * 356.22134 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2829 2.7464 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5576 0.0001 12 6 1.2440 -4.8630 0.0011 13 7 2.1986 -5.9795 0.0004 14 6 2.9173 -6.0629 1.2897 15 6 3.1559 -7.5773 1.5123 16 6 1.8441 -8.1869 0.9516 17 1 1.0508 -8.1544 1.6985 18 6 2.0755 -9.6216 0.4733 19 7 2.2705 -10.4971 1.6316 20 6 2.4870 -11.8151 1.4512 21 8 2.5255 -12.2767 0.3269 22 6 2.6771 -12.6973 2.6173 23 6 2.8985 -14.0566 2.5323 24 16 3.0468 -14.5586 4.1719 25 7 2.8290 -13.1432 4.8008 26 7 2.6509 -12.2822 3.8787 27 6 1.5115 -7.2620 -0.2381 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6169 -4.9209 -0.8886 31 1 0.6177 -4.9205 0.8914 32 1 3.8683 -5.5339 1.2291 33 1 2.3054 -5.6515 2.0925 34 1 3.2693 -7.8030 2.5726 35 1 4.0205 -7.9236 0.9462 36 1 2.9617 -9.6548 -0.1605 37 1 1.2091 -9.9591 -0.0955 38 1 2.2395 -10.1290 2.5285 39 1 2.9646 -14.6650 1.6424 40 1 1.8700 -7.7079 -1.1658 41 1 0.4346 -7.1035 -0.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753130552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:12 Heat of formation + Delta-G solvation = 9.218153 kcal Electronic energy + Delta-G solvation = -25648.343914 eV Core-core repulsion = 21691.046385 eV Total energy + Delta-G solvation = -3957.297529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58173 -39.87662 -39.09663 -37.64747 -35.31218 -33.86624 -32.79440 -31.94789 -31.14512 -29.50833 -27.85507 -27.10548 -25.50634 -24.12739 -23.29911 -21.40556 -20.99847 -20.66921 -19.46546 -19.17752 -17.85682 -17.41149 -16.63420 -16.52069 -16.20793 -15.78075 -15.63098 -15.19605 -14.83140 -14.52149 -14.38005 -13.91174 -13.85387 -13.65563 -13.19645 -13.15251 -12.72826 -12.60686 -12.44892 -12.07792 -11.71788 -11.46772 -11.29746 -11.14569 -10.95404 -10.93567 -10.87292 -10.63875 -10.62318 -10.61689 -10.47293 -10.42007 -10.18681 -9.46950 -9.45218 -8.41916 -7.94391 -7.85036 -6.38795 -3.79479 -0.48420 0.36814 0.93141 0.98768 2.65932 2.69083 3.22013 3.27354 3.31236 3.31974 3.94489 4.05019 4.14101 4.27233 4.35953 4.45686 4.51435 4.76118 4.81446 5.12260 5.17357 5.25290 5.31275 5.43538 5.47284 5.58695 5.73241 5.81632 5.83101 5.92234 5.96391 6.04426 6.24581 6.32332 6.48623 6.82444 7.11840 7.27106 7.29637 7.57572 7.65669 8.09210 8.65408 9.21311 9.57958 10.10299 10.79000 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.001621 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.312268 B =17270.082735 C =17619.499613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.040 3.960 13 N -0.504 5.504 14 C 0.053 3.947 15 C -0.126 4.126 16 C -0.125 4.125 17 H 0.083 0.917 18 C 0.131 3.869 19 N -0.706 5.706 20 C 0.603 3.397 21 O -0.525 6.525 22 C -0.023 4.023 23 C -0.236 4.236 24 S 0.465 5.535 25 N -0.288 5.288 26 N -0.211 5.211 27 C 0.051 3.949 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.210 0.790 40 H 0.081 0.919 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 -30.283 7.222 31.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.091 4.091 13 N -0.228 5.228 14 C -0.074 4.074 15 C -0.164 4.164 16 C -0.145 4.145 17 H 0.102 0.898 18 C 0.007 3.993 19 N -0.357 5.357 20 C 0.384 3.616 21 O -0.400 6.400 22 C -0.170 4.170 23 C -0.393 4.393 24 S 0.600 5.400 25 N -0.268 5.268 26 N -0.081 5.081 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.247 0.753 39 H 0.227 0.773 40 H 0.099 0.901 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.174 -30.383 7.896 31.467 hybrid contribution -1.069 1.302 -0.457 1.746 sum 1.104 -29.081 7.440 30.038 Atomic orbital electron populations 1.69601 1.05914 1.28187 1.50772 1.25246 0.95626 0.99667 0.97431 0.85925 0.78749 0.80531 0.79042 1.19913 1.21016 1.19967 1.19644 0.93316 0.82252 1.47567 0.88010 1.41855 1.09138 1.04578 1.64769 1.19748 0.88428 0.84520 0.84330 1.90506 1.13681 1.87005 1.54884 1.22123 0.93953 0.91648 1.01413 1.63266 1.25439 1.01040 1.33080 1.23027 1.00527 0.94702 0.89189 1.22874 0.96816 0.95915 1.00831 1.22684 0.99168 0.93438 0.99188 0.89828 1.21497 1.02587 0.87867 0.87317 1.45856 1.71282 1.06941 1.11586 1.16617 0.77383 0.81718 0.85870 1.90862 1.51114 1.75179 1.22829 1.22700 1.07958 0.93438 0.92921 1.28921 1.04681 0.98284 1.07464 1.81624 1.48799 1.18030 0.91497 1.78663 1.21736 1.01090 1.25354 1.71532 1.13070 1.26589 0.96953 1.22817 0.97859 0.89515 0.97572 0.91881 0.77547 0.89397 0.93380 0.88748 0.93981 0.90997 0.90374 0.90282 0.90730 0.75280 0.77347 0.90114 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 10 C 0.44 10.55 7.58 -10.98 -0.08 10.47 16 11 O -0.58 -15.67 14.61 5.55 0.08 -15.59 16 12 C 0.04 0.72 5.06 -4.97 -0.03 0.69 16 13 N -0.50 -8.24 4.86 -232.68 -1.13 -9.38 16 14 C 0.05 0.82 5.75 -2.29 -0.01 0.81 16 15 C -0.13 -1.41 6.44 -24.59 -0.16 -1.57 16 16 C -0.13 -1.22 2.96 -88.80 -0.26 -1.48 16 17 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 18 C 0.13 1.19 4.97 -4.04 -0.02 1.17 16 19 N -0.71 -6.33 5.47 -61.38 -0.34 -6.67 16 20 C 0.60 6.19 7.81 -12.51 -0.10 6.09 16 21 O -0.52 -6.71 16.80 5.27 0.09 -6.62 16 22 C -0.02 -0.20 6.87 -83.78 -0.58 -0.77 16 23 C -0.24 -1.36 11.21 30.64 0.34 -1.02 16 24 S 0.46 2.04 23.38 -107.50 -2.51 -0.47 16 25 N -0.29 -2.43 12.49 60.35 0.75 -1.67 16 26 N -0.21 -1.98 11.24 32.74 0.37 -1.62 16 27 C 0.05 0.61 6.45 -2.84 -0.02 0.59 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 30 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 31 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.09 1.74 7.37 -51.93 -0.38 1.35 16 33 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.90 7.94 -51.93 -0.41 0.48 16 36 H 0.08 0.79 8.00 -51.93 -0.42 0.37 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 3.29 8.06 -40.82 -0.33 2.96 16 39 H 0.21 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.08 0.93 7.82 -51.93 -0.41 0.52 16 41 H 0.06 0.63 7.56 -51.93 -0.39 0.24 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -34.33 364.43 -7.79 -42.12 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.08 Total: 9.73 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.15 Total: 6.95 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.32 Total: -57.81 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.17 Total: -22.20 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.51 Total: -0.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.33 -7.79 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753130552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.336 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds