Wall clock time and date at job start Tue Mar 31 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 119.99714 * 2 1 4 4 H 1.48507 * 109.46974 * 240.00119 * 3 2 1 5 5 H 1.48499 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47492 * 119.99868 * 3 2 1 7 7 C 1.38948 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99920 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99755 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47223 * 179.97438 * 12 10 9 14 14 C 1.47848 * 110.99770 * 69.15046 * 13 12 10 15 15 C 1.54912 * 104.79318 * 146.36508 * 14 13 12 16 16 C 1.55142 * 101.65289 * 322.93474 * 15 14 13 17 17 H 1.09004 * 110.85503 * 277.20234 * 16 15 14 18 18 C 1.52996 * 110.70820 * 154.03649 * 16 15 14 19 19 N 1.46498 * 109.47059 * 71.39552 * 18 16 15 20 20 C 1.34777 * 119.99828 * 179.72339 * 19 18 16 21 21 O 1.21603 * 119.99956 * 0.28069 * 20 19 18 22 22 C 1.47453 * 120.00004 * 180.27978 * 20 19 18 23 23 C 1.37981 * 124.15372 * 179.72938 * 22 20 19 24 24 S 1.72106 * 104.03215 * 179.89842 * 23 22 20 25 25 N 1.56405 * 96.15003 * 0.32311 * 24 23 22 26 26 N 1.27409 * 109.87870 * 359.80206 * 25 24 23 27 27 C 1.47437 * 111.00023 * 189.99900 * 13 12 10 28 28 H 0.97003 * 120.00730 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00142 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46891 * 59.99571 * 12 10 9 31 31 H 1.09003 * 109.46549 * 299.99847 * 12 10 9 32 32 H 1.08997 * 110.37691 * 265.19034 * 14 13 12 33 33 H 1.08998 * 110.37277 * 27.43268 * 14 13 12 34 34 H 1.08998 * 110.99104 * 204.84258 * 15 14 13 35 35 H 1.08997 * 110.98722 * 81.01918 * 15 14 13 36 36 H 1.09004 * 109.47066 * 311.39820 * 18 16 15 37 37 H 1.08994 * 109.46974 * 191.39967 * 18 16 15 38 38 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 39 39 H 1.08005 * 127.98481 * 359.96718 * 23 22 20 40 40 H 1.09002 * 109.88929 * 117.34017 * 27 13 12 41 41 H 1.08998 * 110.02228 * 356.22134 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2829 2.7464 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5576 0.0001 12 6 1.2440 -4.8630 0.0011 13 7 2.1986 -5.9795 0.0004 14 6 2.9173 -6.0629 1.2897 15 6 3.1559 -7.5773 1.5123 16 6 1.8441 -8.1869 0.9516 17 1 1.0508 -8.1544 1.6985 18 6 2.0755 -9.6216 0.4733 19 7 2.2705 -10.4971 1.6316 20 6 2.4870 -11.8151 1.4512 21 8 2.5255 -12.2767 0.3269 22 6 2.6771 -12.6973 2.6173 23 6 2.8985 -14.0566 2.5323 24 16 3.0468 -14.5586 4.1719 25 7 2.8290 -13.1432 4.8008 26 7 2.6509 -12.2822 3.8787 27 6 1.5115 -7.2620 -0.2381 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6169 -4.9209 -0.8886 31 1 0.6177 -4.9205 0.8914 32 1 3.8683 -5.5339 1.2291 33 1 2.3054 -5.6515 2.0925 34 1 3.2693 -7.8030 2.5726 35 1 4.0205 -7.9236 0.9462 36 1 2.9617 -9.6548 -0.1605 37 1 1.2091 -9.9591 -0.0955 38 1 2.2395 -10.1290 2.5285 39 1 2.9646 -14.6650 1.6424 40 1 1.8700 -7.7079 -1.1658 41 1 0.4346 -7.1035 -0.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753130552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:11 Heat of formation + Delta-G solvation = -19.224706 kcal Electronic energy + Delta-G solvation = -25649.577289 eV Core-core repulsion = 21691.046385 eV Total energy + Delta-G solvation = -3958.530904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.15724 -40.84481 -40.26726 -39.22092 -36.29992 -35.81556 -33.54210 -33.26072 -32.79432 -30.52785 -28.81172 -28.12132 -26.73792 -25.66450 -24.04231 -22.36436 -21.87857 -21.48206 -20.97417 -20.15613 -19.87353 -18.13228 -17.74593 -17.29204 -17.14347 -16.86244 -16.50543 -16.41401 -16.12452 -15.93868 -15.64847 -15.56662 -14.90857 -14.58974 -14.53205 -14.25858 -13.67795 -13.65078 -13.53515 -13.23262 -13.04489 -12.99798 -12.84417 -12.42767 -12.34691 -12.13193 -12.11006 -11.88031 -11.65963 -11.53653 -11.46691 -11.27727 -11.18123 -10.91552 -10.28857 -10.20244 -9.99632 -9.17014 -8.45419 -5.94013 -0.94351 -0.05028 0.30192 0.52982 1.39903 1.41369 1.52335 1.98003 1.99639 2.07822 2.29441 2.72895 2.86145 3.21227 3.39465 3.55337 3.62447 3.65696 3.85353 3.91197 4.28597 4.32277 4.33371 4.36511 4.38888 4.50846 4.55902 4.65431 4.76708 4.85385 4.96169 5.05275 5.17099 5.21893 5.35913 5.41404 5.90902 6.06313 6.17289 6.19973 6.52000 6.62649 6.94531 7.14461 7.58343 8.14830 8.71772 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.001621 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.312268 B =17270.082735 C =17619.499613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.617 6.617 12 C 0.053 3.947 13 N -0.530 5.530 14 C 0.051 3.949 15 C -0.115 4.115 16 C -0.107 4.107 17 H 0.100 0.900 18 C 0.137 3.863 19 N -0.700 5.700 20 C 0.603 3.397 21 O -0.556 6.556 22 C -0.046 4.046 23 C -0.237 4.237 24 S 0.560 5.440 25 N -0.333 5.333 26 N -0.233 5.233 27 C 0.050 3.950 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.417 0.583 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -32.205 7.789 33.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.503 6.503 12 C -0.078 4.078 13 N -0.254 5.254 14 C -0.076 4.076 15 C -0.153 4.153 16 C -0.127 4.127 17 H 0.118 0.882 18 C 0.014 3.986 19 N -0.350 5.350 20 C 0.385 3.615 21 O -0.434 6.434 22 C -0.194 4.194 23 C -0.393 4.393 24 S 0.695 5.305 25 N -0.314 5.314 26 N -0.103 5.103 27 C -0.078 4.078 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.254 0.746 39 H 0.246 0.754 40 H 0.104 0.896 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.315 -32.307 8.485 33.429 hybrid contribution -0.763 1.741 -0.610 1.996 sum 0.552 -30.567 7.875 31.569 Atomic orbital electron populations 1.69661 1.06773 1.29294 1.50434 1.26018 0.96555 1.02336 0.96371 0.85001 0.77764 0.76748 0.78883 1.19814 1.19424 1.19768 1.19611 0.92644 0.84085 1.49943 0.90463 1.41929 1.09266 1.04684 1.65478 1.20861 0.88336 0.86014 0.82061 1.90480 1.15809 1.87908 1.56085 1.21985 0.93612 0.88821 1.03381 1.63150 1.26164 1.02477 1.33642 1.22914 0.98527 0.97237 0.88955 1.22791 0.97598 0.92739 1.02155 1.22538 0.98557 0.93101 0.98508 0.88183 1.21382 1.02522 0.87404 0.87311 1.45812 1.70695 1.06736 1.11791 1.16811 0.76692 0.82004 0.85959 1.90837 1.52772 1.75759 1.24050 1.22572 1.09985 0.94332 0.92522 1.29299 1.02980 0.97636 1.09431 1.81264 1.45549 1.14493 0.89156 1.78337 1.23371 1.03270 1.26407 1.71557 1.14003 1.27621 0.97093 1.22886 0.98622 0.87685 0.98622 0.91335 0.77044 0.87253 0.91214 0.92777 0.94395 0.89078 0.90788 0.91118 0.90057 0.74613 0.75435 0.89598 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -30.02 5.29 -306.97 -1.62 -31.64 16 10 C 0.44 21.35 7.58 87.66 0.66 22.01 16 11 O -0.62 -34.88 14.61 -3.07 -0.04 -34.92 16 12 C 0.05 1.86 5.06 85.56 0.43 2.29 16 13 N -0.53 -17.03 4.86 -890.08 -4.33 -21.36 16 14 C 0.05 1.61 5.75 86.77 0.50 2.10 16 15 C -0.11 -2.46 6.44 31.98 0.21 -2.25 16 16 C -0.11 -1.87 2.96 -9.61 -0.03 -1.90 16 17 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 18 C 0.14 2.28 4.97 86.38 0.43 2.71 16 19 N -0.70 -11.65 5.47 -466.36 -2.55 -14.20 16 20 C 0.60 11.84 7.81 86.67 0.68 12.51 16 21 O -0.56 -13.83 16.80 -4.04 -0.07 -13.90 16 22 C -0.05 -0.75 6.87 41.36 0.28 -0.47 16 23 C -0.24 -2.25 11.21 67.76 0.76 -1.49 16 24 S 0.56 3.54 23.38 -56.49 -1.32 2.21 16 25 N -0.33 -5.16 12.49 37.02 0.46 -4.69 16 26 N -0.23 -4.17 11.24 -50.34 -0.57 -4.73 16 27 C 0.05 1.08 6.45 86.65 0.56 1.64 16 28 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 30 H 0.11 3.34 8.03 -2.39 -0.02 3.32 16 31 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 32 H 0.05 2.11 7.37 -2.39 -0.02 2.09 16 33 H 0.04 1.19 7.62 -2.39 -0.02 1.18 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 36 H 0.07 1.33 8.00 -2.38 -0.02 1.31 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.42 6.07 8.06 -92.71 -0.75 5.33 16 39 H 0.23 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.09 1.81 7.82 -2.39 -0.02 1.79 16 41 H 0.08 1.42 7.56 -2.39 -0.02 1.41 16 Total: -1.00 -76.81 364.43 -2.35 -79.15 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.38 Total: 29.86 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 5.76 Total: 18.51 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -8.32 Total: -126.46 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.11 Total: -48.82 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.32 Total: 2.21 kcal Total: -76.81 -2.35 -79.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753130552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.930 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds