Wall clock time and date at job start Tue Mar 31 2020 22:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.47446 * 110.99901 * 69.86829 * 13 12 10 15 15 C 1.54320 * 107.23299 * 123.26024 * 14 13 12 16 16 C 1.55138 * 103.01699 * 22.28557 * 15 14 13 17 17 H 1.08995 * 110.99411 * 82.43781 * 16 15 14 18 18 C 1.53003 * 110.99191 * 206.25593 * 16 15 14 19 19 N 1.46508 * 109.46895 * 293.54512 * 18 16 15 20 20 C 1.34769 * 119.99816 * 179.97438 * 19 18 16 21 21 O 1.21598 * 120.00561 * 0.02562 * 20 19 18 22 22 C 1.47452 * 119.99746 * 180.02562 * 20 19 18 23 23 C 1.37982 * 124.15515 * 180.02562 * 22 20 19 24 24 S 1.72106 * 104.03407 * 180.02562 * 23 22 20 25 25 N 1.56397 * 96.15184 * 359.97438 * 24 23 22 26 26 N 1.27422 * 109.87953 * 359.72596 * 25 24 23 27 27 C 1.47835 * 111.00330 * 190.71312 * 13 12 10 28 28 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 31 31 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 32 32 H 1.09003 * 109.89131 * 242.66576 * 14 13 12 33 33 H 1.08996 * 109.88887 * 3.69329 * 14 13 12 34 34 H 1.09001 * 110.70559 * 140.66086 * 15 14 13 35 35 H 1.08993 * 110.70859 * 263.90255 * 15 14 13 36 36 H 1.08995 * 109.46961 * 53.54237 * 18 16 15 37 37 H 1.08999 * 109.47485 * 173.54993 * 18 16 15 38 38 H 0.97003 * 119.99490 * 0.02562 * 19 18 16 39 39 H 1.08003 * 127.98404 * 359.95731 * 23 22 20 40 40 H 1.08997 * 110.37759 * 332.46336 * 27 13 12 41 41 H 1.09002 * 110.37700 * 94.80654 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 5.7800 -4.4121 -1.2915 15 6 7.1327 -4.9083 -1.8443 16 6 8.0145 -5.0084 -0.5718 17 1 7.8367 -5.9465 -0.0463 18 6 9.4964 -4.8490 -0.9180 19 7 9.9344 -5.9898 -1.7262 20 6 11.2113 -6.0640 -2.1508 21 8 12.0000 -5.1844 -1.8628 22 6 11.6521 -7.2118 -2.9647 23 6 12.9359 -7.3746 -3.4434 24 16 12.8731 -8.8605 -4.3095 25 7 11.3617 -9.1521 -4.0327 26 7 10.8635 -8.2192 -3.3219 27 6 7.5056 -3.8028 0.2572 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3633 -0.0011 30 1 5.9240 -1.8567 -0.8901 31 1 5.9242 -1.8566 0.8899 32 1 5.1072 -5.2570 -1.1445 33 1 5.3331 -3.6986 -1.9837 34 1 7.0219 -5.8856 -2.3141 35 1 7.5500 -4.1868 -2.5466 36 1 9.6406 -3.9275 -1.4819 37 1 10.0818 -4.8084 0.0005 38 1 9.3052 -6.6913 -1.9562 39 1 13.7841 -6.7200 -3.3071 40 1 7.9808 -2.8820 -0.0811 41 1 7.6990 -3.9630 1.3179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753130553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:15 Heat of formation + Delta-G solvation = 16.259334 kcal Electronic energy + Delta-G solvation = -25731.827246 eV Core-core repulsion = 21774.835046 eV Total energy + Delta-G solvation = -3956.992200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60703 -39.93817 -39.19976 -37.81633 -35.38389 -33.91847 -32.82847 -32.03294 -31.57576 -29.57040 -27.94626 -27.26332 -25.58870 -24.00049 -23.36603 -21.44564 -20.93430 -20.77061 -19.57305 -19.24455 -18.19101 -17.39929 -16.71325 -16.52507 -16.24458 -16.01739 -15.66457 -15.29310 -15.07002 -14.80143 -14.37854 -14.03970 -13.72240 -13.50273 -13.17981 -13.08731 -12.95006 -12.65106 -12.43233 -12.26383 -12.23394 -11.76055 -11.36894 -11.23476 -11.09324 -10.99559 -10.93885 -10.66956 -10.65654 -10.65318 -10.57850 -10.49435 -9.95543 -9.53884 -9.52206 -8.55371 -8.15205 -7.97876 -6.28753 -3.79915 -0.50621 0.34642 0.90256 0.96791 2.60897 2.65130 3.03663 3.08242 3.16213 3.28409 3.77337 3.92869 4.11349 4.12136 4.32231 4.40317 4.55992 4.60804 4.77618 4.88019 5.10176 5.21687 5.24290 5.27977 5.39060 5.55633 5.60153 5.68308 5.70979 5.81794 5.89909 5.92591 6.04563 6.10353 6.41799 6.79260 7.08388 7.15339 7.17856 7.60935 7.61476 8.17053 8.63242 8.98140 9.45288 9.87022 10.84498 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030865 B = 0.001706 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.953826 B =16411.705632 C =16747.834458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.453 3.547 11 O -0.557 6.557 12 C 0.038 3.962 13 N -0.505 5.505 14 C 0.056 3.944 15 C -0.141 4.141 16 C -0.111 4.111 17 H 0.095 0.905 18 C 0.129 3.871 19 N -0.705 5.705 20 C 0.604 3.396 21 O -0.526 6.526 22 C -0.023 4.023 23 C -0.237 4.237 24 S 0.466 5.534 25 N -0.287 5.287 26 N -0.210 5.210 27 C 0.052 3.948 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.413 0.587 39 H 0.209 0.791 40 H 0.048 0.952 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.583 -13.319 -7.733 34.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.439 6.439 12 C -0.094 4.094 13 N -0.229 5.229 14 C -0.072 4.072 15 C -0.179 4.179 16 C -0.131 4.131 17 H 0.113 0.887 18 C 0.006 3.994 19 N -0.356 5.356 20 C 0.385 3.615 21 O -0.401 6.401 22 C -0.171 4.171 23 C -0.394 4.394 24 S 0.602 5.398 25 N -0.268 5.268 26 N -0.081 5.081 27 C -0.076 4.076 28 H 0.083 0.917 29 H 0.202 0.798 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.226 0.774 40 H 0.067 0.933 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 29.679 -15.165 -7.925 34.258 hybrid contribution 0.809 2.993 -0.004 3.101 sum 30.488 -12.172 -7.929 33.772 Atomic orbital electron populations 1.69624 1.05619 1.27418 1.49630 1.25034 0.95486 0.97933 0.97770 0.86674 0.79724 0.84104 0.78880 1.19616 1.19584 1.20241 1.19421 0.79251 0.96592 1.47927 0.86310 1.42213 1.07507 1.06124 1.67531 1.19657 0.88070 0.84554 0.83886 1.90561 1.69348 1.30857 1.53084 1.22118 0.95720 0.90015 1.01562 1.63237 1.12088 1.15238 1.32316 1.22734 0.95617 0.99923 0.88900 1.22966 0.96213 1.02020 0.96746 1.22564 0.92415 1.00771 0.97336 0.88664 1.21448 0.94292 0.88381 0.95279 1.45829 1.10557 1.26112 1.53131 1.16614 0.82671 0.83300 0.78928 1.90858 1.53434 1.38644 1.57152 1.22683 0.91032 0.98092 1.05270 1.28921 1.02293 1.05148 1.03034 1.81631 1.12027 1.08569 1.37596 1.78668 1.08156 1.22237 1.17724 1.71543 1.29726 0.98332 1.08489 1.23004 0.88075 0.96184 1.00378 0.91669 0.79784 0.93203 0.89261 0.89709 0.92572 0.90632 0.91447 0.90775 0.90539 0.75130 0.77363 0.93329 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.50 0.77 -25.16 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.62 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.22 5.09 -10.96 -0.06 -14.28 16 10 C 0.45 10.32 7.43 -10.98 -0.08 10.24 16 11 O -0.56 -14.97 15.12 5.55 0.08 -14.89 16 12 C 0.04 0.63 5.03 -4.98 -0.03 0.60 16 13 N -0.50 -7.83 4.85 -232.69 -1.13 -8.95 16 14 C 0.06 0.83 5.65 -2.83 -0.02 0.81 16 15 C -0.14 -1.47 6.12 -24.91 -0.15 -1.62 16 16 C -0.11 -1.03 3.10 -88.48 -0.27 -1.30 16 17 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 18 C 0.13 1.10 5.12 -4.04 -0.02 1.07 16 19 N -0.71 -6.04 5.40 -61.37 -0.33 -6.37 16 20 C 0.60 5.97 7.81 -12.51 -0.10 5.87 16 21 O -0.53 -6.50 16.80 5.28 0.09 -6.41 16 22 C -0.02 -0.20 6.87 -83.78 -0.58 -0.77 16 23 C -0.24 -1.31 11.21 30.64 0.34 -0.97 16 24 S 0.47 1.96 23.38 -107.50 -2.51 -0.55 16 25 N -0.29 -2.37 12.49 60.35 0.75 -1.62 16 26 N -0.21 -1.94 11.24 32.74 0.37 -1.57 16 27 C 0.05 0.58 6.15 -2.30 -0.01 0.56 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 30 H 0.05 0.74 7.96 -51.93 -0.41 0.32 16 31 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.06 0.92 7.31 -51.93 -0.38 0.54 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 36 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.41 3.18 7.92 -40.82 -0.32 2.86 16 39 H 0.21 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.05 0.49 7.70 -51.93 -0.40 0.09 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -35.74 362.25 -7.48 -43.22 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.10 Total: 9.61 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.16 Total: 6.75 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.38 Total: -57.96 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.17 Total: -21.30 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.51 Total: -0.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.74 -7.48 -43.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753130553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.480 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds