Wall clock time and date at job start Tue Mar 31 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46776 * 269.99463 * 3 2 1 5 5 H 1.48495 * 109.47232 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.46976 * 149.99735 * 3 2 1 7 7 C 1.38951 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99557 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00205 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.47325 * 294.99858 * 15 14 13 17 17 N 1.46500 * 109.47170 * 54.99822 * 15 14 13 18 18 C 1.34779 * 120.00196 * 204.99986 * 17 15 14 19 19 O 1.21606 * 119.99824 * 0.02562 * 18 17 15 20 20 C 1.47447 * 120.00063 * 179.97438 * 18 17 15 21 21 C 1.37982 * 124.15742 * 179.97438 * 20 18 17 22 22 S 1.72097 * 104.03585 * 180.02562 * 21 20 18 23 23 N 1.56408 * 96.15559 * 0.02562 * 22 21 20 24 24 N 1.27419 * 109.87147 * 359.72014 * 23 22 21 25 25 C 1.52994 * 109.47404 * 174.99689 * 15 14 13 26 26 C 1.52999 * 117.50412 * 248.74803 * 25 15 14 27 27 C 1.53002 * 117.50104 * 180.08511 * 25 15 14 28 28 H 0.96996 * 120.00205 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 31 31 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 32 32 H 1.00908 * 110.99583 * 303.94914 * 13 12 10 33 33 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 34 34 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 35 35 H 0.96998 * 120.00051 * 24.99940 * 17 15 14 36 36 H 1.08006 * 127.97816 * 359.97287 * 21 20 18 37 37 H 1.09003 * 115.54830 * 34.41759 * 25 15 14 38 38 H 1.09003 * 117.49323 * 359.97438 * 26 25 15 39 39 H 1.09003 * 117.50071 * 145.01968 * 26 25 15 40 40 H 1.09000 * 117.50257 * 214.97832 * 27 25 15 41 41 H 1.09002 * 117.49965 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0022 13 7 6.0505 -3.7554 0.0014 14 6 7.5189 -3.7946 0.0031 15 6 7.9903 -5.2501 0.0028 16 1 7.6880 -5.7302 0.9335 17 7 7.3884 -5.9581 -1.1297 18 6 7.2261 -7.2952 -1.0794 19 8 7.5789 -7.9138 -0.0937 20 6 6.6198 -8.0077 -2.2191 21 6 6.4140 -9.3714 -2.2593 22 16 5.6917 -9.6393 -3.7982 23 7 5.6978 -8.1417 -4.2493 24 7 6.2005 -7.4149 -3.3314 25 6 9.5146 -5.2926 -0.1212 26 6 10.1026 -5.8369 -1.4246 27 6 10.1837 -6.6684 -0.1419 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3633 0.0014 30 1 5.9234 -1.8570 0.8927 31 1 5.9248 -1.8562 -0.8873 32 1 5.6744 -4.2724 0.7821 33 1 7.8969 -3.2897 -0.8859 34 1 7.8948 -3.2915 0.8940 35 1 7.1066 -5.4647 -1.9159 36 1 6.6522 -10.1022 -1.5005 37 1 10.0491 -4.4803 0.3714 38 1 9.4033 -6.1653 -2.1936 39 1 11.0241 -5.3831 -1.7893 40 1 11.1586 -6.7612 0.3367 41 1 9.5380 -7.5433 -0.0667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754446303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:31 Heat of formation + Delta-G solvation = 13.750028 kcal Electronic energy + Delta-G solvation = -26509.789521 eV Core-core repulsion = 22552.688509 eV Total energy + Delta-G solvation = -3957.101012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19742 -40.90437 -40.24946 -38.42651 -36.72508 -35.89674 -34.69352 -33.74434 -33.16811 -30.89618 -28.34822 -27.83262 -25.76984 -24.83716 -23.50830 -22.97219 -21.96362 -21.35599 -20.97602 -20.35363 -20.20308 -18.11477 -17.62086 -17.53720 -17.36995 -16.93509 -16.68047 -16.55447 -16.23974 -15.69359 -15.58976 -15.10935 -14.99754 -14.79023 -14.66781 -14.22456 -14.09631 -13.69507 -13.55943 -13.14826 -13.03749 -12.79199 -12.75648 -12.55977 -12.41081 -12.29135 -11.97722 -11.53971 -11.51003 -11.29916 -11.15859 -11.09357 -10.89906 -10.86078 -10.43757 -10.24704 -10.02578 -9.32840 -8.41479 -6.02563 -0.93505 -0.03532 0.34609 0.54336 1.30099 1.36451 1.45000 1.97190 1.99745 2.11335 2.23372 2.67202 2.77907 2.96155 3.15149 3.36414 3.65708 3.77838 3.88178 3.99345 4.06855 4.16716 4.28534 4.34533 4.36026 4.45982 4.54234 4.62733 4.70583 4.84642 4.94909 5.03961 5.23891 5.37426 5.45406 5.52500 5.89081 6.02732 6.27890 6.32319 6.57843 6.60000 6.88540 7.04216 7.40313 7.98009 8.76497 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.002731 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.670886 B =10248.591231 C =12058.325624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.330 4.330 8 H 0.052 0.948 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.616 6.616 12 C 0.064 3.936 13 N -0.686 5.686 14 C 0.058 3.942 15 C 0.178 3.822 16 H 0.078 0.922 17 N -0.680 5.680 18 C 0.604 3.396 19 O -0.550 6.550 20 C -0.047 4.047 21 C -0.238 4.238 22 S 0.554 5.446 23 N -0.335 5.335 24 N -0.233 5.233 25 C -0.159 4.159 26 C -0.171 4.171 27 C -0.193 4.193 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.341 0.659 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.230 0.770 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.894 -13.775 -4.456 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.459 4.459 8 H 0.070 0.930 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.501 6.501 12 C -0.068 4.068 13 N -0.318 5.318 14 C -0.070 4.070 15 C 0.074 3.926 16 H 0.096 0.904 17 N -0.330 5.330 18 C 0.386 3.614 19 O -0.429 6.429 20 C -0.195 4.195 21 C -0.395 4.395 22 S 0.689 5.311 23 N -0.316 5.316 24 N -0.103 5.103 25 C -0.178 4.178 26 C -0.209 4.209 27 C -0.230 4.230 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.099 0.901 31 H 0.136 0.864 32 H 0.159 0.841 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.738 -14.640 -6.187 28.567 hybrid contribution 0.072 1.432 1.985 2.449 sum 23.810 -13.208 -4.202 27.550 Atomic orbital electron populations 1.69810 1.08249 1.29271 1.50399 1.26156 0.96482 1.02842 0.96023 0.85332 0.79528 0.76480 0.79948 1.18176 1.20107 1.15156 1.18993 0.81673 0.94819 1.50394 0.93015 1.42017 1.05699 1.07673 1.67889 1.21096 0.91254 0.83211 0.80955 1.90556 1.71523 1.32924 1.55075 1.21629 0.89155 0.91650 1.04344 1.60024 1.07999 1.12094 1.51666 1.22307 0.86391 0.94585 1.03754 1.20593 0.90840 0.92069 0.89138 0.90440 1.45723 1.60203 1.05937 1.21089 1.16766 0.77737 0.82703 0.84222 1.90745 1.51943 1.67747 1.32467 1.22718 1.07474 0.92923 0.96368 1.29276 1.03430 0.99208 1.07613 1.81111 1.38233 1.11710 1.00072 1.78348 1.22845 1.05598 1.24778 1.71572 1.09976 1.30258 0.98452 1.22693 0.93362 0.98886 1.02865 1.22945 1.02747 1.04138 0.91032 1.23302 1.02603 0.95351 1.01717 0.91157 0.77391 0.90109 0.86403 0.84085 0.88434 0.90942 0.74811 0.75313 0.84569 0.90205 0.87448 0.87988 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 2 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 3 Si 0.97 38.80 27.74 68.60 1.90 40.70 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 7 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 9 N -0.59 -27.83 5.09 -306.99 -1.56 -29.40 16 10 C 0.45 20.08 7.82 87.65 0.69 20.76 16 11 O -0.62 -34.65 15.78 -3.06 -0.05 -34.70 16 12 C 0.06 1.84 6.17 85.55 0.53 2.37 16 13 N -0.69 -18.87 5.85 -517.93 -3.03 -21.90 16 14 C 0.06 1.05 5.22 86.30 0.45 1.50 16 15 C 0.18 3.54 2.67 44.99 0.12 3.66 16 16 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 17 N -0.68 -15.93 3.33 -445.79 -1.49 -17.41 16 18 C 0.60 15.74 6.65 86.67 0.58 16.31 16 19 O -0.55 -15.95 13.82 -4.05 -0.06 -16.00 16 20 C -0.05 -1.13 6.87 41.36 0.28 -0.85 16 21 C -0.24 -3.97 11.21 67.76 0.76 -3.22 16 22 S 0.55 7.58 23.38 -56.49 -1.32 6.26 16 23 N -0.34 -8.03 12.49 37.02 0.46 -7.56 16 24 N -0.23 -6.28 11.24 -50.34 -0.57 -6.85 16 25 C -0.16 -2.52 5.70 -10.80 -0.06 -2.59 16 26 C -0.17 -2.83 9.74 30.62 0.30 -2.53 16 27 C -0.19 -3.53 9.82 30.62 0.30 -3.23 16 28 H 0.28 15.53 8.31 -92.71 -0.77 14.75 16 29 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.34 10.70 8.43 -89.69 -0.76 9.94 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.42 10.10 8.19 -92.71 -0.76 9.34 16 36 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.14 1.55 8.11 -2.39 -0.02 1.53 16 38 H 0.08 1.55 6.67 -2.39 -0.02 1.54 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 2.21 5.01 -2.39 -0.01 2.20 16 Total: -1.00 -84.17 363.30 -1.12 -85.29 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -0.98 Total: 45.38 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.26 Total: 13.04 kcal Atomic # 7 Polarization: -134.09 SS G_CDS: -5.88 Total: -139.97 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.10 Total: -50.70 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Atomic # 16 Polarization: 7.58 SS G_CDS: -1.32 Total: 6.26 kcal Total: -84.17 -1.12 -85.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754446303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.042 kcal (2) G-P(sol) polarization free energy of solvation -84.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds