Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99618 * 2 1 4 4 H 1.48500 * 109.46772 * 269.99503 * 3 2 1 5 5 H 1.48495 * 109.47183 * 29.99723 * 3 2 1 6 6 H 1.48498 * 109.46732 * 149.99744 * 3 2 1 7 7 C 1.38946 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99946 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00317 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99530 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46953 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00313 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47386 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46844 * 65.00219 * 15 14 13 17 17 N 1.46502 * 109.47447 * 305.00235 * 15 14 13 18 18 C 1.34769 * 119.99917 * 154.99772 * 17 15 14 19 19 O 1.21610 * 120.00461 * 359.97438 * 18 17 15 20 20 C 1.47454 * 119.99699 * 180.02562 * 18 17 15 21 21 C 1.37988 * 124.15044 * 179.97438 * 20 18 17 22 22 S 1.72108 * 104.02744 * 179.97438 * 21 20 18 23 23 N 1.56405 * 96.15666 * 0.02562 * 22 21 20 24 24 N 1.27414 * 109.87334 * 359.97438 * 23 22 21 25 25 C 1.53002 * 109.47171 * 184.99920 * 15 14 13 26 26 C 1.52998 * 117.49649 * 248.74732 * 25 15 14 27 27 C 1.53002 * 117.49523 * 180.09059 * 25 15 14 28 28 H 0.96993 * 120.00057 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99754 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47377 * 60.00836 * 12 10 9 31 31 H 1.09002 * 109.47579 * 300.00260 * 12 10 9 32 32 H 1.00909 * 111.00072 * 303.96072 * 13 12 10 33 33 H 1.09002 * 109.47026 * 59.99933 * 14 13 12 34 34 H 1.09001 * 109.46989 * 300.00035 * 14 13 12 35 35 H 0.97001 * 119.99404 * 335.00369 * 17 15 14 36 36 H 1.07993 * 127.98559 * 0.26686 * 21 20 18 37 37 H 1.08995 * 115.54904 * 34.41923 * 25 15 14 38 38 H 1.08999 * 117.50273 * 0.02562 * 26 25 15 39 39 H 1.09006 * 117.49701 * 145.02308 * 26 25 15 40 40 H 1.09006 * 117.49467 * 214.97847 * 27 25 15 41 41 H 1.09000 * 117.50066 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4475 -3.4209 0.0001 12 6 5.5608 -2.3703 0.0011 13 7 6.0506 -3.7553 0.0004 14 6 7.5191 -3.7944 0.0010 15 6 7.9905 -5.2500 0.0010 16 1 7.6896 -5.7293 -0.9306 17 7 7.3868 -5.9589 1.1321 18 6 7.2246 -7.2958 1.0803 19 8 7.5790 -7.9137 0.0947 20 6 6.6165 -8.0093 2.2185 21 6 6.4098 -9.3730 2.2568 22 16 5.6855 -9.6422 3.7947 23 7 5.6908 -8.1450 4.2470 24 7 6.2005 -7.4182 3.3329 25 6 9.5147 -5.2925 0.1273 26 6 10.3112 -5.7695 -1.0887 27 6 10.1840 -6.6682 0.1439 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0014 30 1 5.9241 -1.8566 0.8911 31 1 5.9242 -1.8564 -0.8889 32 1 5.6750 -4.2720 0.7816 33 1 7.8956 -3.2910 0.8915 34 1 7.8963 -3.2899 -0.8885 35 1 7.1037 -5.4660 1.9181 36 1 6.6515 -10.1034 1.4990 37 1 9.9573 -4.5099 0.7436 38 1 9.7495 -6.0527 -1.9789 39 1 11.2782 -5.3010 -1.2723 40 1 11.0674 -6.7905 0.7708 41 1 9.5385 -7.5430 0.0652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754446304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = 40.158550 kcal Electronic energy + Delta-G solvation = -26376.966559 eV Core-core repulsion = 22421.010706 eV Total energy + Delta-G solvation = -3955.955853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39217 -39.96475 -38.48262 -37.58982 -35.76992 -34.13069 -33.68121 -32.42030 -31.65610 -29.78236 -27.41824 -26.49823 -24.34079 -23.79284 -22.48307 -22.12608 -21.20251 -20.56175 -19.73427 -19.32655 -18.34575 -17.10989 -16.73292 -16.38640 -16.12060 -15.77018 -15.64033 -15.44087 -15.00847 -14.82977 -14.31028 -14.21513 -13.85849 -13.37324 -13.22622 -12.93573 -12.69568 -12.42300 -12.29856 -12.01391 -11.95015 -11.85635 -11.60135 -11.55135 -11.14844 -10.73316 -10.59384 -10.58841 -10.42814 -10.37407 -10.23946 -10.22061 -9.96972 -9.56770 -9.25217 -8.60140 -8.21375 -8.16069 -6.30374 -3.81860 -0.25142 0.59739 1.16505 1.22191 2.77562 2.89358 3.02690 3.07305 3.15351 3.49006 3.73418 3.74528 3.95025 4.10805 4.37344 4.57644 4.58508 4.70551 4.85149 4.87975 4.91972 5.04125 5.11909 5.20950 5.30315 5.51039 5.52486 5.59502 5.70112 5.78330 5.81165 5.92866 6.00086 6.07524 6.26246 6.99948 7.04559 7.32581 7.49047 7.58728 7.86924 8.15098 8.60408 8.95705 9.42984 9.83280 10.82828 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.002764 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.116739 B =10128.255151 C =12230.706050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.668 5.668 14 C 0.054 3.946 15 C 0.178 3.822 16 H 0.103 0.897 17 N -0.698 5.698 18 C 0.613 3.387 19 O -0.522 6.522 20 C -0.021 4.021 21 C -0.237 4.237 22 S 0.460 5.540 23 N -0.286 5.286 24 N -0.208 5.208 25 C -0.172 4.172 26 C -0.166 4.166 27 C -0.183 4.183 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.350 0.650 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.209 0.791 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.594 -15.483 5.431 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.445 6.445 12 C -0.085 4.085 13 N -0.301 5.301 14 C -0.076 4.076 15 C 0.074 3.926 16 H 0.121 0.879 17 N -0.348 5.348 18 C 0.395 3.605 19 O -0.398 6.398 20 C -0.169 4.169 21 C -0.394 4.394 22 S 0.596 5.404 23 N -0.266 5.266 24 N -0.079 5.079 25 C -0.191 4.191 26 C -0.204 4.204 27 C -0.220 4.220 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.171 0.829 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.226 0.774 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.394 -16.373 5.788 26.786 hybrid contribution 1.247 2.192 -0.101 2.524 sum 21.642 -14.181 5.687 26.491 Atomic orbital electron populations 1.69623 1.05653 1.27491 1.49405 1.25040 0.95494 0.97980 0.97657 0.86660 0.79738 0.84018 0.78892 1.19593 1.20205 1.19524 1.19433 0.79249 0.96636 1.48037 0.86318 1.42196 1.07527 1.06129 1.67130 1.19693 0.88175 0.84592 0.84057 1.90575 1.69405 1.30932 1.53592 1.21722 0.95178 0.90152 1.01451 1.60022 1.05461 1.12914 1.51723 1.22244 0.89055 0.94427 1.01873 1.20697 0.89304 0.92284 0.90295 0.87868 1.45807 1.61435 1.06626 1.20929 1.16521 0.77751 0.82179 0.84087 1.90772 1.50389 1.67163 1.31488 1.22672 1.06168 0.91801 0.96221 1.28882 1.04513 0.99749 1.06240 1.81563 1.41165 1.15277 1.02393 1.78679 1.21180 1.02914 1.23842 1.71519 1.09097 1.29207 0.98057 1.22655 0.93785 0.99232 1.03478 1.22937 1.01198 1.03632 0.92637 1.23266 1.02723 0.95022 1.00974 0.91617 0.79689 0.93611 0.89246 0.82944 0.94666 0.88991 0.75616 0.77425 0.87670 0.88397 0.88895 0.89541 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.44 27.74 -169.99 -4.72 14.73 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 7 C -0.30 -8.71 10.16 -14.93 -0.15 -8.87 16 8 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 9 N -0.59 -14.14 5.09 -10.96 -0.06 -14.19 16 10 C 0.45 10.27 7.82 -10.99 -0.09 10.18 16 11 O -0.56 -15.37 15.78 5.55 0.09 -15.28 16 12 C 0.05 0.78 6.17 -4.98 -0.03 0.74 16 13 N -0.67 -10.16 6.12 -115.06 -0.70 -10.86 16 14 C 0.05 0.59 5.28 -3.83 -0.02 0.57 16 15 C 0.18 1.93 2.58 -67.93 -0.18 1.75 16 16 H 0.10 1.33 7.33 -51.93 -0.38 0.95 16 17 N -0.70 -7.90 4.33 -54.87 -0.24 -8.13 16 18 C 0.61 7.61 7.14 -12.51 -0.09 7.52 16 19 O -0.52 -7.30 13.82 5.27 0.07 -7.23 16 20 C -0.02 -0.24 6.87 -83.78 -0.58 -0.82 16 21 C -0.24 -1.96 11.21 30.64 0.34 -1.61 16 22 S 0.46 3.23 23.38 -107.50 -2.51 0.72 16 23 N -0.29 -3.24 12.49 60.35 0.75 -2.49 16 24 N -0.21 -2.58 11.24 32.74 0.37 -2.21 16 25 C -0.17 -1.57 5.36 -90.62 -0.49 -2.06 16 26 C -0.17 -1.45 10.18 -26.70 -0.27 -1.72 16 27 C -0.18 -1.76 9.74 -26.69 -0.26 -2.02 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.35 5.68 7.28 -39.29 -0.29 5.39 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.41 4.40 7.74 -40.82 -0.32 4.09 16 36 H 0.21 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.11 0.86 8.11 -51.93 -0.42 0.43 16 38 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.12 1.35 5.02 -51.93 -0.26 1.09 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -35.37 364.57 -7.41 -42.78 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -4.83 Total: 17.16 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.90 Total: 4.72 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.90 Total: -63.09 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.16 Total: -22.51 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.72 Total: 14.73 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.51 Total: 0.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.37 -7.41 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754446304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.935 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds