Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99618 * 2 1 4 4 H 1.48500 * 109.46772 * 269.99503 * 3 2 1 5 5 H 1.48495 * 109.47183 * 29.99723 * 3 2 1 6 6 H 1.48498 * 109.46732 * 149.99744 * 3 2 1 7 7 C 1.38946 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99946 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00317 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99530 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46953 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00313 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47386 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46844 * 65.00219 * 15 14 13 17 17 N 1.46502 * 109.47447 * 305.00235 * 15 14 13 18 18 C 1.34769 * 119.99917 * 154.99772 * 17 15 14 19 19 O 1.21610 * 120.00461 * 359.97438 * 18 17 15 20 20 C 1.47454 * 119.99699 * 180.02562 * 18 17 15 21 21 C 1.37988 * 124.15044 * 179.97438 * 20 18 17 22 22 S 1.72108 * 104.02744 * 179.97438 * 21 20 18 23 23 N 1.56405 * 96.15666 * 0.02562 * 22 21 20 24 24 N 1.27414 * 109.87334 * 359.97438 * 23 22 21 25 25 C 1.53002 * 109.47171 * 184.99920 * 15 14 13 26 26 C 1.52998 * 117.49649 * 248.74732 * 25 15 14 27 27 C 1.53002 * 117.49523 * 180.09059 * 25 15 14 28 28 H 0.96993 * 120.00057 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99754 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47377 * 60.00836 * 12 10 9 31 31 H 1.09002 * 109.47579 * 300.00260 * 12 10 9 32 32 H 1.00909 * 111.00072 * 303.96072 * 13 12 10 33 33 H 1.09002 * 109.47026 * 59.99933 * 14 13 12 34 34 H 1.09001 * 109.46989 * 300.00035 * 14 13 12 35 35 H 0.97001 * 119.99404 * 335.00369 * 17 15 14 36 36 H 1.07993 * 127.98559 * 0.26686 * 21 20 18 37 37 H 1.08995 * 115.54904 * 34.41923 * 25 15 14 38 38 H 1.08999 * 117.50273 * 0.02562 * 26 25 15 39 39 H 1.09006 * 117.49701 * 145.02308 * 26 25 15 40 40 H 1.09006 * 117.49467 * 214.97847 * 27 25 15 41 41 H 1.09000 * 117.50066 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4475 -3.4209 0.0001 12 6 5.5608 -2.3703 0.0011 13 7 6.0506 -3.7553 0.0004 14 6 7.5191 -3.7944 0.0010 15 6 7.9905 -5.2500 0.0010 16 1 7.6896 -5.7293 -0.9306 17 7 7.3868 -5.9589 1.1321 18 6 7.2246 -7.2958 1.0803 19 8 7.5790 -7.9137 0.0947 20 6 6.6165 -8.0093 2.2185 21 6 6.4098 -9.3730 2.2568 22 16 5.6855 -9.6422 3.7947 23 7 5.6908 -8.1450 4.2470 24 7 6.2005 -7.4182 3.3329 25 6 9.5147 -5.2925 0.1273 26 6 10.3112 -5.7695 -1.0887 27 6 10.1840 -6.6682 0.1439 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0014 30 1 5.9241 -1.8566 0.8911 31 1 5.9242 -1.8564 -0.8889 32 1 5.6750 -4.2720 0.7816 33 1 7.8956 -3.2910 0.8915 34 1 7.8963 -3.2899 -0.8885 35 1 7.1037 -5.4660 1.9181 36 1 6.6515 -10.1034 1.4990 37 1 9.9573 -4.5099 0.7436 38 1 9.7495 -6.0527 -1.9789 39 1 11.2782 -5.3010 -1.2723 40 1 11.0674 -6.7905 0.7708 41 1 9.5385 -7.5430 0.0652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754446304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = 10.105204 kcal Electronic energy + Delta-G solvation = -26378.269770 eV Core-core repulsion = 22421.010706 eV Total energy + Delta-G solvation = -3957.259064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19839 -40.85046 -40.25489 -38.49621 -36.83222 -35.94925 -34.86604 -33.75113 -33.20142 -30.82825 -28.37445 -27.84031 -25.78700 -24.90868 -23.21731 -23.04924 -21.99660 -21.43498 -21.25137 -20.57151 -20.16173 -18.06864 -17.69126 -17.53699 -17.22443 -16.95205 -16.65714 -16.50032 -16.32520 -15.85493 -15.63237 -15.29137 -15.12052 -14.94382 -14.46996 -14.39372 -13.98443 -13.69490 -13.32042 -13.14899 -12.97947 -12.89381 -12.83650 -12.52193 -12.41379 -12.31175 -11.97892 -11.56706 -11.51741 -11.32908 -11.18246 -11.13526 -11.02928 -10.91235 -10.46619 -10.25502 -10.11439 -9.35439 -8.41857 -6.03170 -0.95128 -0.05581 0.31039 0.52205 1.30184 1.36272 1.45060 1.94020 1.95629 2.01065 2.23205 2.63827 2.74157 3.02965 3.14496 3.31860 3.63285 3.75297 3.83563 3.98522 4.10396 4.16213 4.21909 4.29405 4.34748 4.42600 4.49847 4.60757 4.73168 4.85578 4.88660 5.06542 5.26961 5.30441 5.44483 5.51817 5.87365 6.00639 6.19535 6.29438 6.51480 6.59207 6.87534 6.97583 7.39130 7.96489 8.76059 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.002764 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.116739 B =10128.255151 C =12230.706050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.330 4.330 8 H 0.052 0.948 9 N -0.589 5.589 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.062 3.938 13 N -0.691 5.691 14 C 0.060 3.940 15 C 0.180 3.820 16 H 0.077 0.923 17 N -0.695 5.695 18 C 0.608 3.392 19 O -0.546 6.546 20 C -0.047 4.047 21 C -0.237 4.237 22 S 0.558 5.442 23 N -0.334 5.334 24 N -0.235 5.235 25 C -0.165 4.165 26 C -0.159 4.159 27 C -0.192 4.192 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.341 0.659 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.410 0.590 36 H 0.230 0.770 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.981 -13.929 5.882 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.460 4.460 8 H 0.070 0.930 9 N -0.231 5.231 10 C 0.234 3.766 11 O -0.502 6.502 12 C -0.070 4.070 13 N -0.324 5.324 14 C -0.069 4.069 15 C 0.076 3.924 16 H 0.095 0.905 17 N -0.344 5.344 18 C 0.391 3.609 19 O -0.424 6.424 20 C -0.195 4.195 21 C -0.394 4.394 22 S 0.693 5.307 23 N -0.315 5.315 24 N -0.104 5.104 25 C -0.185 4.185 26 C -0.196 4.196 27 C -0.229 4.229 28 H 0.089 0.911 29 H 0.227 0.773 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 23.822 -14.804 6.245 28.734 hybrid contribution 0.095 1.424 -0.228 1.445 sum 23.917 -13.380 6.018 28.058 Atomic orbital electron populations 1.69811 1.08243 1.29299 1.50296 1.26159 0.96490 1.02845 0.95967 0.85331 0.79516 0.76451 0.79989 1.18087 1.20074 1.15200 1.19000 0.81628 0.94859 1.50472 0.92993 1.42008 1.05729 1.07623 1.67768 1.21074 0.91207 0.83264 0.81079 1.90554 1.71507 1.32948 1.55154 1.21663 0.89298 0.91514 1.04511 1.60006 1.08222 1.12356 1.51773 1.22323 0.86221 0.94552 1.03812 1.20663 0.90572 0.92099 0.89051 0.90506 1.45833 1.61108 1.06442 1.21056 1.16729 0.77519 0.82504 0.84176 1.90751 1.51567 1.67652 1.32421 1.22671 1.07637 0.92999 0.96223 1.29287 1.03355 0.99181 1.07593 1.81147 1.38043 1.11534 0.99986 1.78326 1.22641 1.05690 1.24859 1.71542 1.10046 1.30369 0.98464 1.22621 0.92399 0.99369 1.04063 1.22990 1.01838 1.02920 0.91895 1.23211 1.02953 0.94585 1.02188 0.91128 0.77347 0.90017 0.86175 0.84059 0.92079 0.87315 0.75340 0.75304 0.85693 0.89391 0.86842 0.88367 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.66 0.30 -56.80 16 2 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 3 Si 0.97 38.81 27.74 68.60 1.90 40.72 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 7 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 8 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 9 N -0.59 -27.94 5.09 -306.98 -1.56 -29.50 16 10 C 0.45 20.31 7.82 87.66 0.69 21.00 16 11 O -0.62 -35.11 15.78 -3.06 -0.05 -35.16 16 12 C 0.06 1.84 6.17 85.56 0.53 2.36 16 13 N -0.69 -19.98 6.12 -517.93 -3.17 -23.15 16 14 C 0.06 1.14 5.28 86.30 0.46 1.59 16 15 C 0.18 3.73 2.58 44.99 0.12 3.85 16 16 H 0.08 2.01 7.33 -2.38 -0.02 2.00 16 17 N -0.69 -15.78 4.33 -445.77 -1.93 -17.72 16 18 C 0.61 15.57 7.14 86.67 0.62 16.19 16 19 O -0.55 -15.84 13.82 -4.06 -0.06 -15.90 16 20 C -0.05 -1.09 6.87 41.36 0.28 -0.81 16 21 C -0.24 -3.76 11.21 67.76 0.76 -3.00 16 22 S 0.56 7.09 23.38 -56.49 -1.32 5.77 16 23 N -0.33 -7.57 12.49 37.02 0.46 -7.10 16 24 N -0.23 -5.95 11.24 -50.34 -0.57 -6.51 16 25 C -0.16 -2.70 5.36 -10.79 -0.06 -2.75 16 26 C -0.16 -2.49 10.18 30.62 0.31 -2.18 16 27 C -0.19 -3.52 9.74 30.62 0.30 -3.22 16 28 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.34 10.99 7.28 -89.69 -0.65 10.34 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 8.88 7.74 -92.71 -0.72 8.17 16 36 H 0.23 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.13 1.59 8.11 -2.39 -0.02 1.57 16 38 H 0.09 1.56 8.05 -2.39 -0.02 1.54 16 39 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.09 2.22 5.02 -2.39 -0.01 2.20 16 Total: -1.00 -84.97 364.57 -1.51 -86.48 By element: Atomic # 1 Polarization: 45.93 SS G_CDS: -0.84 Total: 45.09 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.32 Total: 13.79 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -6.46 Total: -140.79 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.10 Total: -51.06 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.72 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.32 Total: 5.77 kcal Total: -84.97 -1.51 -86.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754446304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.581 kcal (2) G-P(sol) polarization free energy of solvation -84.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds