Wall clock time and date at job start Tue Mar 31 2020 22:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31239 * 124.05836 * 2 1 4 4 N 1.27339 * 120.04052 * 179.97438 * 3 2 1 5 5 S 1.56638 * 109.73848 * 359.69389 * 4 3 2 6 6 C 1.38251 * 124.05548 * 179.97438 * 2 1 3 7 7 C 1.47174 * 128.47618 * 0.02562 * 6 2 1 8 8 O 1.21623 * 119.99599 * 0.02562 * 7 6 2 9 9 N 1.34772 * 120.00061 * 180.02562 * 7 6 2 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 H 1.08996 * 109.47308 * 270.02804 * 1 2 3 29 29 H 1.08998 * 109.47267 * 30.02796 * 1 2 3 30 30 H 1.09000 * 109.47353 * 150.02592 * 1 2 3 31 31 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 33 33 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 34 34 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 35 35 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 36 36 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 37 37 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 38 38 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 39 39 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 40 40 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 41 41 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 0.0005 5 16 3.9366 -0.5097 0.0089 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5493 0.0006 8 8 0.6521 -2.8131 -0.0002 9 7 2.7504 -3.5424 0.0017 10 6 2.3106 -4.9398 0.0012 11 6 3.5335 -5.8594 0.0033 12 1 4.0175 -5.9160 0.9784 13 6 3.2667 -7.2331 -0.6277 14 6 4.6768 -7.0493 -1.2061 15 7 4.4710 -5.5925 -1.1033 16 6 5.6841 -4.9226 -0.6157 17 6 6.5318 -4.5021 -1.7886 18 8 6.1616 -4.7370 -2.9196 19 7 7.7012 -3.8652 -1.5809 20 6 8.4721 -3.4822 -2.6480 21 1 8.1426 -3.6913 -3.6550 22 6 9.6776 -2.8251 -2.4338 23 7 10.0784 -2.5702 -1.2085 24 14 10.7283 -2.3039 -3.8877 25 1 10.0586 -2.7043 -5.1512 26 1 10.9051 -0.8295 -3.8674 27 1 12.0562 -2.9629 -3.8003 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 3.6973 -3.3320 0.0027 32 1 1.7124 -5.1322 -0.8894 33 1 1.7104 -5.1321 0.8905 34 1 2.4741 -7.2342 -1.3760 35 1 3.1817 -8.0486 0.0905 36 1 4.7746 -7.4026 -2.2326 37 1 5.4666 -7.4233 -0.5547 38 1 5.4052 -4.0432 -0.0353 39 1 6.2501 -5.6091 0.0141 40 1 7.9971 -3.6771 -0.6765 41 1 10.9200 -2.1118 -1.0591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754472097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:35 Heat of formation + Delta-G solvation = 43.539465 kcal Electronic energy + Delta-G solvation = -26930.770407 eV Core-core repulsion = 22974.961162 eV Total energy + Delta-G solvation = -3955.809245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10641 -40.59541 -39.33717 -37.83894 -34.82510 -33.97577 -33.42667 -31.48049 -30.83459 -29.59544 -27.69266 -27.03209 -25.92502 -23.85139 -23.68297 -22.18582 -20.64427 -19.76634 -19.37909 -18.65207 -17.98552 -17.77306 -16.36182 -16.26492 -16.08715 -15.80370 -15.21953 -15.07725 -14.74744 -14.51753 -14.22299 -13.98105 -13.84658 -13.61804 -13.21230 -13.16840 -12.87243 -12.56285 -12.52262 -12.12731 -11.69391 -11.66212 -11.62341 -11.42968 -11.14813 -10.98177 -10.70072 -10.47069 -10.38694 -10.27866 -10.15667 -9.98221 -9.86637 -9.57361 -9.27395 -8.94404 -8.31657 -8.03002 -6.48036 -3.88837 -0.39680 0.70505 1.35704 1.79035 2.73100 2.83244 3.12154 3.23897 3.30430 3.72988 3.77990 3.82844 4.15404 4.30299 4.39708 4.53055 4.59959 4.85820 4.88989 5.09619 5.12543 5.19672 5.27052 5.31390 5.39081 5.50897 5.52310 5.54737 5.64703 5.71914 5.85989 5.92528 6.05956 6.11006 6.18762 6.40223 7.03457 7.14051 7.49888 7.51755 7.84274 7.99243 8.54402 9.12294 9.46601 9.98336 10.69561 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.004029 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.992983 B = 6947.126608 C = 9613.081902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.101 3.899 3 N -0.256 5.256 4 N -0.252 5.252 5 S 0.443 5.557 6 C -0.305 4.305 7 C 0.606 3.394 8 O -0.521 6.521 9 N -0.711 5.711 10 C 0.142 3.858 11 C 0.001 3.999 12 H 0.085 0.915 13 C -0.132 4.132 14 C 0.006 3.994 15 N -0.434 5.434 16 C 0.006 3.994 17 C 0.443 3.557 18 O -0.571 6.571 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.901 5.901 24 Si 0.927 3.073 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.401 0.599 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.391 0.609 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 -3.399 8.839 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.121 5.121 4 N -0.233 5.233 5 S 0.580 5.420 6 C -0.446 4.446 7 C 0.390 3.610 8 O -0.398 6.398 9 N -0.363 5.363 10 C 0.019 3.981 11 C -0.110 4.110 12 H 0.103 0.897 13 C -0.170 4.170 14 C -0.123 4.123 15 N -0.157 5.157 16 C -0.127 4.127 17 C 0.228 3.772 18 O -0.454 6.454 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.754 3.246 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.237 0.763 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.224 0.776 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.038 -2.111 7.545 16.077 hybrid contribution 0.662 -0.299 0.650 0.975 sum -13.376 -2.410 8.194 15.871 Atomic orbital electron populations 1.20508 0.83872 1.04976 1.04189 1.22945 1.00161 0.85074 0.96500 1.70644 0.96969 1.27945 1.16584 1.78852 1.09336 1.16054 1.19026 1.83029 1.08686 1.01080 1.49223 1.27772 0.98717 0.99964 1.18131 1.16374 0.85824 0.81986 0.76842 1.90787 1.15693 1.83195 1.50146 1.45826 1.09674 1.06426 1.74419 1.21435 0.95742 0.78083 1.02875 1.23818 0.95286 0.95807 0.96052 0.89727 1.23152 0.98519 0.95082 1.00241 1.23737 0.96090 0.89492 1.02980 1.68877 1.08680 1.09865 1.28253 1.22592 0.93049 0.99696 0.97324 1.19571 0.83316 0.84644 0.89704 1.90549 1.72272 1.59055 1.23561 1.41876 1.17604 1.50959 1.09721 1.19732 1.00163 1.33955 0.88957 0.87882 1.25236 0.97614 0.97254 0.97659 1.69605 1.23015 1.41965 1.19622 0.85838 0.79398 0.78239 0.81135 1.19206 1.20692 1.20731 0.89445 0.89925 0.88085 0.76328 0.90121 0.90616 0.88460 0.90295 0.89032 0.91273 0.90470 0.91862 0.77590 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.90 36.00 0.36 -0.39 16 2 C 0.10 1.29 7.00 -82.84 -0.58 0.72 16 3 N -0.26 -3.68 11.54 33.42 0.39 -3.29 16 4 N -0.25 -3.71 12.51 60.35 0.75 -2.96 16 5 S 0.44 5.67 23.05 -107.50 -2.48 3.20 16 6 C -0.31 -3.94 6.81 -35.95 -0.24 -4.19 16 7 C 0.61 7.98 7.80 -12.63 -0.10 7.88 16 8 O -0.52 -7.62 14.89 5.26 0.08 -7.54 16 9 N -0.71 -8.48 5.46 -61.47 -0.34 -8.82 16 10 C 0.14 1.48 5.81 -4.04 -0.02 1.46 16 11 C 0.00 0.01 3.25 -71.44 -0.23 -0.23 16 12 H 0.08 0.72 7.91 -51.92 -0.41 0.31 16 13 C -0.13 -1.18 8.00 -26.20 -0.21 -1.39 16 14 C 0.01 0.07 7.69 -7.55 -0.06 0.01 16 15 N -0.43 -6.18 5.39 -237.96 -1.28 -7.46 16 16 C 0.01 0.09 5.04 -4.97 -0.03 0.06 16 17 C 0.44 9.72 7.83 -10.98 -0.09 9.64 16 18 O -0.57 -14.88 16.01 5.54 0.09 -14.79 16 19 N -0.56 -13.39 5.29 -10.96 -0.06 -13.45 16 20 C -0.30 -7.99 9.68 -14.93 -0.14 -8.13 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 23 N -0.90 -23.55 13.05 55.50 0.72 -22.82 16 24 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.06 6.47 -51.93 -0.34 0.73 16 31 H 0.40 4.74 5.63 -40.82 -0.23 4.51 16 32 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.87 7.94 -51.93 -0.41 0.46 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.78 7.44 -51.93 -0.39 0.39 16 38 H 0.08 1.02 6.25 -51.93 -0.32 0.69 16 39 H 0.06 0.86 7.35 -51.93 -0.38 0.48 16 40 H 0.39 8.78 7.90 -40.82 -0.32 8.46 16 41 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -32.79 363.30 -7.95 -40.74 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.84 Total: 10.20 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.44 Total: 5.97 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.19 Total: -58.80 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.17 Total: -22.34 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -2.48 Total: 3.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.79 -7.95 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.280 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds