Wall clock time and date at job start Tue Mar 31 2020 22:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31239 * 124.05836 * 2 1 4 4 N 1.27339 * 120.04052 * 179.97438 * 3 2 1 5 5 S 1.56638 * 109.73848 * 359.69389 * 4 3 2 6 6 C 1.38251 * 124.05548 * 179.97438 * 2 1 3 7 7 C 1.47174 * 128.47618 * 0.02562 * 6 2 1 8 8 O 1.21623 * 119.99599 * 0.02562 * 7 6 2 9 9 N 1.34772 * 120.00061 * 180.02562 * 7 6 2 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 H 1.08996 * 109.47308 * 270.02804 * 1 2 3 29 29 H 1.08998 * 109.47267 * 30.02796 * 1 2 3 30 30 H 1.09000 * 109.47353 * 150.02592 * 1 2 3 31 31 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 33 33 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 34 34 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 35 35 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 36 36 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 37 37 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 38 38 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 39 39 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 40 40 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 41 41 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 0.0005 5 16 3.9366 -0.5097 0.0089 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5493 0.0006 8 8 0.6521 -2.8131 -0.0002 9 7 2.7504 -3.5424 0.0017 10 6 2.3106 -4.9398 0.0012 11 6 3.5335 -5.8594 0.0033 12 1 4.0175 -5.9160 0.9784 13 6 3.2667 -7.2331 -0.6277 14 6 4.6768 -7.0493 -1.2061 15 7 4.4710 -5.5925 -1.1033 16 6 5.6841 -4.9226 -0.6157 17 6 6.5318 -4.5021 -1.7886 18 8 6.1616 -4.7370 -2.9196 19 7 7.7012 -3.8652 -1.5809 20 6 8.4721 -3.4822 -2.6480 21 1 8.1426 -3.6913 -3.6550 22 6 9.6776 -2.8251 -2.4338 23 7 10.0784 -2.5702 -1.2085 24 14 10.7283 -2.3039 -3.8877 25 1 10.0586 -2.7043 -5.1512 26 1 10.9051 -0.8295 -3.8674 27 1 12.0562 -2.9629 -3.8003 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 3.6973 -3.3320 0.0027 32 1 1.7124 -5.1322 -0.8894 33 1 1.7104 -5.1321 0.8905 34 1 2.4741 -7.2342 -1.3760 35 1 3.1817 -8.0486 0.0905 36 1 4.7746 -7.4026 -2.2326 37 1 5.4666 -7.4233 -0.5547 38 1 5.4052 -4.0432 -0.0353 39 1 6.2501 -5.6091 0.0141 40 1 7.9971 -3.6771 -0.6765 41 1 10.9200 -2.1118 -1.0591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754472097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:35 Heat of formation + Delta-G solvation = 16.689416 kcal Electronic energy + Delta-G solvation = -26931.934712 eV Core-core repulsion = 22974.961162 eV Total energy + Delta-G solvation = -3956.973551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13440 -41.59383 -40.40813 -39.53881 -35.95631 -35.75049 -34.40530 -33.30218 -32.09641 -30.54366 -28.58967 -28.03833 -27.52179 -25.34931 -24.60740 -23.14388 -21.64621 -21.06990 -20.62654 -19.89502 -19.63634 -18.76901 -17.71782 -17.33814 -17.15125 -17.03202 -16.49119 -16.36642 -16.06164 -15.80208 -15.55411 -15.26821 -15.05312 -14.78840 -14.20824 -14.11703 -13.99039 -13.91290 -13.55091 -13.52423 -13.08649 -12.92896 -12.61853 -12.57257 -12.41328 -12.32046 -12.14269 -11.93618 -11.68816 -11.50915 -11.46753 -11.16788 -11.02310 -10.86244 -10.35612 -10.20627 -9.98065 -9.70833 -8.45593 -5.92797 -1.43854 -0.30346 0.31449 0.76604 1.35498 1.41949 1.54320 1.74068 1.85527 2.07829 2.28444 2.74878 2.81914 3.20863 3.33415 3.43100 3.53803 3.59966 3.80479 4.05381 4.15172 4.21619 4.29248 4.36502 4.43300 4.51491 4.66930 4.67247 4.75523 4.87054 4.90003 5.04612 5.11320 5.21092 5.28370 5.42288 5.44572 5.94615 6.12445 6.16308 6.48548 6.63312 6.84976 7.16242 7.59820 8.16664 8.71615 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.004029 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.992983 B = 6947.126608 C = 9613.081902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.098 3.902 3 N -0.271 5.271 4 N -0.280 5.280 5 S 0.464 5.536 6 C -0.310 4.310 7 C 0.606 3.394 8 O -0.537 6.537 9 N -0.708 5.708 10 C 0.140 3.860 11 C 0.011 3.989 12 H 0.112 0.888 13 C -0.111 4.111 14 C -0.004 4.004 15 N -0.471 5.471 16 C 0.018 3.982 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.573 5.573 20 C -0.328 4.328 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.917 5.917 24 Si 0.983 3.017 25 H -0.276 1.276 26 H -0.273 1.273 27 H -0.271 1.271 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.401 0.599 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.397 0.603 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -4.212 10.461 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 N -0.136 5.136 4 N -0.260 5.260 5 S 0.600 5.400 6 C -0.451 4.451 7 C 0.390 3.610 8 O -0.416 6.416 9 N -0.359 5.359 10 C 0.017 3.983 11 C -0.098 4.098 12 H 0.130 0.870 13 C -0.149 4.149 14 C -0.133 4.133 15 N -0.194 5.194 16 C -0.114 4.114 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.211 5.211 20 C -0.458 4.458 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.558 5.558 24 Si 0.808 3.192 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.196 1.196 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.237 0.763 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.231 0.769 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.665 -2.930 9.198 17.557 hybrid contribution 0.810 -0.115 0.118 0.827 sum -13.855 -3.045 9.315 16.971 Atomic orbital electron populations 1.20612 0.81956 1.05341 1.05370 1.23395 1.01324 0.84635 0.95671 1.70664 0.96966 1.28796 1.17162 1.78747 1.09782 1.17325 1.20157 1.82864 1.08508 1.00156 1.48471 1.27875 0.98783 1.00168 1.18267 1.16387 0.85753 0.82125 0.76757 1.90778 1.16262 1.83394 1.51140 1.45877 1.09470 1.06914 1.73652 1.21589 0.96131 0.77217 1.03376 1.23906 0.93937 0.95908 0.96066 0.86987 1.23091 0.96001 0.95478 1.00308 1.23832 0.98884 0.88571 1.02012 1.68837 1.08696 1.10961 1.30885 1.22482 0.93012 1.01452 0.94440 1.20747 0.82781 0.82469 0.91082 1.90518 1.73194 1.60283 1.26277 1.41922 1.18265 1.51730 1.09227 1.19606 1.01590 1.35768 0.88831 0.90703 1.25874 0.98081 0.96818 1.00004 1.69648 1.23456 1.42051 1.20634 0.85012 0.78040 0.78161 0.78027 1.20074 1.19853 1.19630 0.87753 0.88526 0.88635 0.76332 0.91313 0.88414 0.88702 0.86940 0.91856 0.89956 0.88031 0.89309 0.76919 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 9.90 71.23 0.71 -0.64 16 2 C 0.10 2.43 7.00 42.65 0.30 2.73 16 3 N -0.27 -7.68 11.54 -48.18 -0.56 -8.23 16 4 N -0.28 -8.21 12.51 37.02 0.46 -7.75 16 5 S 0.46 11.66 23.05 -56.49 -1.30 10.36 16 6 C -0.31 -7.74 6.81 24.62 0.17 -7.58 16 7 C 0.61 15.13 7.80 86.59 0.68 15.81 16 8 O -0.54 -14.96 14.89 -4.10 -0.06 -15.02 16 9 N -0.71 -15.52 5.46 -466.63 -2.55 -18.07 16 10 C 0.14 2.54 5.81 86.38 0.50 3.04 16 11 C 0.01 0.19 3.25 42.18 0.14 0.33 16 12 H 0.11 1.34 7.91 -2.38 -0.02 1.33 16 13 C -0.11 -1.63 8.00 30.94 0.25 -1.38 16 14 C 0.00 -0.10 7.69 83.57 0.64 0.55 16 15 N -0.47 -12.59 5.39 -906.76 -4.89 -17.48 16 16 C 0.02 0.52 5.04 85.56 0.43 0.95 16 17 C 0.44 19.51 7.83 87.66 0.69 20.20 16 18 O -0.62 -33.05 16.01 -3.08 -0.05 -33.09 16 19 N -0.57 -27.51 5.29 -306.98 -1.62 -29.13 16 20 C -0.33 -17.97 9.68 84.04 0.81 -17.16 16 21 H 0.07 4.46 7.16 -2.91 -0.02 4.43 16 22 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 23 N -0.92 -47.55 13.05 21.66 0.28 -47.27 16 24 Si 0.98 42.25 29.55 68.60 2.03 44.28 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.90 6.47 -2.39 -0.02 1.89 16 31 H 0.40 8.72 5.63 -92.71 -0.52 8.20 16 32 H 0.07 1.44 7.88 -2.38 -0.02 1.42 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.47 7.94 -2.39 -0.02 1.45 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.64 7.44 -2.39 -0.02 1.63 16 38 H 0.10 2.43 6.25 -2.39 -0.01 2.41 16 39 H 0.09 2.15 7.35 -2.38 -0.02 2.13 16 40 H 0.40 17.79 7.90 -92.71 -0.73 17.06 16 41 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -72.56 363.30 -2.62 -75.18 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.14 Total: 29.31 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.77 Total: 16.92 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -8.87 Total: -127.93 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.11 Total: -48.11 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 11.66 SS G_CDS: -1.30 Total: 10.36 kcal Total: -72.56 -2.62 -75.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.868 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds