Wall clock time and date at job start Tue Mar 31 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31237 * 124.05281 * 2 1 4 4 N 1.27343 * 120.03602 * 180.02562 * 3 2 1 5 5 S 1.56642 * 109.73912 * 359.70011 * 4 3 2 6 6 C 1.38242 * 124.05618 * 180.02562 * 2 1 3 7 7 C 1.47174 * 128.47733 * 359.97399 * 6 2 1 8 8 O 1.21620 * 119.99870 * 0.02562 * 7 6 2 9 9 N 1.34770 * 120.00236 * 180.02562 * 7 6 2 10 10 C 1.46504 * 120.00356 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47441 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78756 * 284.19096 * 11 10 9 13 13 C 1.53516 * 113.47725 * 153.38408 * 11 10 9 14 14 C 1.53513 * 83.57411 * 219.20752 * 13 11 10 15 15 N 1.47473 * 113.47971 * 55.00071 * 11 10 9 16 16 C 1.46900 * 111.00093 * 253.47466 * 15 11 10 17 17 C 1.50703 * 109.47111 * 198.37096 * 16 15 11 18 18 O 1.21292 * 119.99715 * 353.84417 * 17 16 15 19 19 N 1.34779 * 120.00299 * 173.83875 * 17 16 15 20 20 C 1.37097 * 119.99916 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00233 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99335 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99633 * 179.72582 * 22 20 19 24 24 Si 1.86792 * 120.00383 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47251 * 89.99967 * 24 22 20 26 26 H 1.48502 * 109.47363 * 210.00212 * 24 22 20 27 27 H 1.48501 * 109.47077 * 330.00219 * 24 22 20 28 28 H 1.08991 * 109.47106 * 269.97297 * 1 2 3 29 29 H 1.09002 * 109.47237 * 29.97786 * 1 2 3 30 30 H 1.09001 * 109.46753 * 149.97434 * 1 2 3 31 31 H 0.97001 * 120.00183 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.46572 * 60.00043 * 10 9 7 33 33 H 1.09003 * 109.47271 * 300.00319 * 10 9 7 34 34 H 1.08999 * 114.16708 * 105.55980 * 13 11 10 35 35 H 1.08997 * 114.16871 * 332.85743 * 13 11 10 36 36 H 1.08996 * 113.47586 * 271.25878 * 14 13 11 37 37 H 1.08994 * 113.52997 * 140.79831 * 14 13 11 38 38 H 1.08995 * 109.47581 * 78.37363 * 16 15 11 39 39 H 1.09002 * 109.47110 * 318.36770 * 16 15 11 40 40 H 0.96996 * 119.99291 * 0.02562 * 19 17 16 41 41 H 0.97001 * 120.00308 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0005 5 16 3.9367 -0.5097 0.0067 6 6 2.2812 -1.1453 -0.0005 7 6 1.8394 -2.5492 -0.0006 8 8 0.6522 -2.8131 -0.0007 9 7 2.7505 -3.5423 -0.0006 10 6 2.3108 -4.9398 -0.0002 11 6 3.5336 -5.8593 0.0004 12 1 4.0193 -5.9165 -0.9739 13 6 3.2658 -7.2328 0.6317 14 6 4.6749 -7.0486 1.2124 15 7 4.4693 -5.5919 1.1084 16 6 5.6831 -4.9222 0.6225 17 6 6.7800 -5.0658 1.6459 18 8 6.5416 -5.5679 2.7240 19 7 8.0259 -4.6363 1.3633 20 6 9.0238 -4.7675 2.2941 21 1 8.8117 -5.2152 3.2538 22 6 10.3081 -4.3242 2.0028 23 7 11.2635 -4.4449 2.8971 24 14 10.6751 -3.5504 0.3428 25 1 10.4545 -2.0840 0.4205 26 1 12.0879 -3.8195 -0.0274 27 1 9.7748 -4.1326 -0.6846 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 3.6974 -3.3319 -0.0002 32 1 1.7114 -5.1323 -0.8900 33 1 1.7118 -5.1320 0.8900 34 1 3.1828 -8.0465 -0.0888 35 1 2.4719 -7.2335 1.3785 36 1 5.4650 -7.4231 0.5616 37 1 4.7719 -7.4013 2.2391 38 1 5.4744 -3.8649 0.4596 39 1 5.9993 -5.3789 -0.3154 40 1 8.2164 -4.2346 0.5012 41 1 12.1601 -4.1359 2.6937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754472098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:38 Heat of formation + Delta-G solvation = 49.609241 kcal Electronic energy + Delta-G solvation = -26781.561344 eV Core-core repulsion = 22826.015304 eV Total energy + Delta-G solvation = -3955.546040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26611 -40.70151 -39.48522 -38.02355 -34.94001 -34.06622 -33.57621 -31.84598 -31.07166 -29.70884 -27.78925 -27.18217 -26.06584 -23.74595 -23.68131 -22.29586 -20.76786 -19.81914 -19.51363 -18.81330 -18.46319 -17.92148 -16.52694 -16.37354 -16.23476 -15.80171 -15.28154 -15.22999 -14.89724 -14.67966 -14.34705 -14.12240 -13.85658 -13.39244 -13.35168 -13.28291 -12.96159 -12.72023 -12.60110 -12.35934 -12.09951 -11.84456 -11.83467 -11.57371 -11.28013 -11.00079 -10.77937 -10.68442 -10.61129 -10.28211 -10.15072 -10.06273 -10.02585 -9.66352 -9.39297 -8.96321 -8.53691 -8.27894 -6.39802 -3.91899 -0.56691 0.52061 1.17622 1.63859 2.61235 2.69194 2.93379 2.98913 3.08359 3.57565 3.58901 3.77659 4.01586 4.20181 4.24729 4.42031 4.51560 4.62719 4.79865 4.98502 5.08174 5.15128 5.22492 5.24839 5.29112 5.37082 5.40870 5.54168 5.62427 5.65059 5.75708 5.80877 5.95714 5.98133 6.12374 6.37149 6.94801 7.01420 7.35509 7.47500 7.71480 8.03635 8.49088 8.85306 9.31817 9.70439 10.73075 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.003614 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.721331 B = 7745.631831 C =10007.586845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.103 3.897 3 N -0.253 5.253 4 N -0.249 5.249 5 S 0.427 5.573 6 C -0.300 4.300 7 C 0.605 3.395 8 O -0.518 6.518 9 N -0.712 5.712 10 C 0.142 3.858 11 C 0.001 3.999 12 H 0.085 0.915 13 C -0.135 4.135 14 C 0.015 3.985 15 N -0.439 5.439 16 C 0.002 3.998 17 C 0.449 3.551 18 O -0.557 6.557 19 N -0.588 5.588 20 C -0.307 4.307 21 H 0.120 0.880 22 C 0.043 3.957 23 N -0.878 5.878 24 Si 0.878 3.122 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.270 1.270 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.399 0.601 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.370 0.630 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.339 2.244 -12.342 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.119 5.119 4 N -0.230 5.230 5 S 0.563 5.437 6 C -0.440 4.440 7 C 0.388 3.612 8 O -0.395 6.395 9 N -0.363 5.363 10 C 0.018 3.982 11 C -0.110 4.110 12 H 0.103 0.897 13 C -0.173 4.173 14 C -0.113 4.113 15 N -0.162 5.162 16 C -0.130 4.130 17 C 0.234 3.766 18 O -0.439 6.439 19 N -0.227 5.227 20 C -0.435 4.435 21 H 0.138 0.862 22 C -0.160 4.160 23 N -0.518 5.518 24 Si 0.704 3.296 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.196 1.196 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.235 0.765 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.202 0.798 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.644 3.284 -10.944 21.021 hybrid contribution 0.385 -0.033 -1.987 2.025 sum -17.260 3.251 -12.932 21.811 Atomic orbital electron populations 1.20532 0.83732 1.04930 1.04465 1.22969 1.00232 0.85011 0.96266 1.70641 0.96922 1.27938 1.16356 1.78895 1.09403 1.15697 1.19020 1.82816 1.09349 1.01484 1.50046 1.27758 0.98382 1.00011 1.17886 1.16379 0.85882 0.81939 0.76992 1.90802 1.15677 1.83112 1.49911 1.45835 1.09543 1.06505 1.74467 1.21459 0.95810 0.77897 1.02985 1.23892 0.95236 0.95946 0.95891 0.89701 1.23209 0.98909 0.94939 1.00226 1.23566 0.95454 0.88869 1.03456 1.68917 1.08345 1.10889 1.28005 1.22618 0.92478 1.00543 0.97348 1.19462 0.82999 0.85127 0.89029 1.90587 1.81636 1.47092 1.24541 1.42214 1.08752 1.55598 1.16154 1.19418 0.87077 1.38747 0.98279 0.86230 1.25044 0.95449 0.97668 0.97876 1.69616 1.02185 1.45955 1.34009 0.86701 0.79006 0.80328 0.83529 1.19453 1.20085 1.19551 0.89229 0.89873 0.88060 0.76489 0.90544 0.90035 0.90300 0.88461 0.91390 0.88500 0.89804 0.92296 0.79753 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.90 36.01 0.36 -0.30 16 2 C 0.10 1.15 7.00 -82.84 -0.58 0.57 16 3 N -0.25 -3.20 11.54 33.42 0.39 -2.81 16 4 N -0.25 -3.16 12.51 60.35 0.75 -2.41 16 5 S 0.43 4.41 23.05 -107.50 -2.48 1.93 16 6 C -0.30 -3.31 6.81 -35.95 -0.24 -3.55 16 7 C 0.60 6.96 7.80 -12.64 -0.10 6.86 16 8 O -0.52 -6.89 14.89 5.26 0.08 -6.82 16 9 N -0.71 -7.28 5.46 -61.47 -0.34 -7.61 16 10 C 0.14 1.33 5.81 -4.04 -0.02 1.30 16 11 C 0.00 0.01 3.25 -71.44 -0.23 -0.23 16 12 H 0.09 0.68 7.63 -51.92 -0.40 0.29 16 13 C -0.13 -1.21 8.00 -26.20 -0.21 -1.42 16 14 C 0.02 0.20 6.34 -7.55 -0.05 0.15 16 15 N -0.44 -5.93 5.74 -237.95 -1.37 -7.30 16 16 C 0.00 0.04 5.10 -4.97 -0.03 0.01 16 17 C 0.45 9.37 7.46 -10.98 -0.08 9.29 16 18 O -0.56 -14.03 14.98 5.55 0.08 -13.94 16 19 N -0.59 -13.07 5.09 -10.96 -0.06 -13.12 16 20 C -0.31 -8.30 10.16 -14.93 -0.15 -8.45 16 21 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -24.94 13.96 55.50 0.77 -24.16 16 24 Si 0.88 18.47 27.74 -169.99 -4.71 13.75 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 27 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.90 6.47 -51.93 -0.34 0.57 16 31 H 0.40 3.85 5.76 -40.82 -0.23 3.62 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 37 H 0.10 1.49 7.97 -51.93 -0.41 1.08 16 38 H 0.08 1.01 6.56 -51.93 -0.34 0.67 16 39 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 40 H 0.37 7.12 5.76 -40.82 -0.24 6.88 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -33.68 358.43 -7.73 -41.41 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.82 Total: 10.40 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.43 Total: 5.28 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.16 Total: -57.41 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.16 Total: -20.76 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.71 Total: 13.75 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -2.48 Total: 1.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.68 -7.73 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.017 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds