Wall clock time and date at job start Tue Mar 31 2020 22:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31237 * 124.05281 * 2 1 4 4 N 1.27343 * 120.03602 * 180.02562 * 3 2 1 5 5 S 1.56642 * 109.73912 * 359.70011 * 4 3 2 6 6 C 1.38242 * 124.05618 * 180.02562 * 2 1 3 7 7 C 1.47174 * 128.47733 * 359.97399 * 6 2 1 8 8 O 1.21620 * 119.99870 * 0.02562 * 7 6 2 9 9 N 1.34770 * 120.00236 * 180.02562 * 7 6 2 10 10 C 1.46504 * 120.00356 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47441 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78756 * 284.19096 * 11 10 9 13 13 C 1.53516 * 113.47725 * 153.38408 * 11 10 9 14 14 C 1.53513 * 83.57411 * 219.20752 * 13 11 10 15 15 N 1.47473 * 113.47971 * 55.00071 * 11 10 9 16 16 C 1.46900 * 111.00093 * 253.47466 * 15 11 10 17 17 C 1.50703 * 109.47111 * 198.37096 * 16 15 11 18 18 O 1.21292 * 119.99715 * 353.84417 * 17 16 15 19 19 N 1.34779 * 120.00299 * 173.83875 * 17 16 15 20 20 C 1.37097 * 119.99916 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00233 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99335 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99633 * 179.72582 * 22 20 19 24 24 Si 1.86792 * 120.00383 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47251 * 89.99967 * 24 22 20 26 26 H 1.48502 * 109.47363 * 210.00212 * 24 22 20 27 27 H 1.48501 * 109.47077 * 330.00219 * 24 22 20 28 28 H 1.08991 * 109.47106 * 269.97297 * 1 2 3 29 29 H 1.09002 * 109.47237 * 29.97786 * 1 2 3 30 30 H 1.09001 * 109.46753 * 149.97434 * 1 2 3 31 31 H 0.97001 * 120.00183 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.46572 * 60.00043 * 10 9 7 33 33 H 1.09003 * 109.47271 * 300.00319 * 10 9 7 34 34 H 1.08999 * 114.16708 * 105.55980 * 13 11 10 35 35 H 1.08997 * 114.16871 * 332.85743 * 13 11 10 36 36 H 1.08996 * 113.47586 * 271.25878 * 14 13 11 37 37 H 1.08994 * 113.52997 * 140.79831 * 14 13 11 38 38 H 1.08995 * 109.47581 * 78.37363 * 16 15 11 39 39 H 1.09002 * 109.47110 * 318.36770 * 16 15 11 40 40 H 0.96996 * 119.99291 * 0.02562 * 19 17 16 41 41 H 0.97001 * 120.00308 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0005 5 16 3.9367 -0.5097 0.0067 6 6 2.2812 -1.1453 -0.0005 7 6 1.8394 -2.5492 -0.0006 8 8 0.6522 -2.8131 -0.0007 9 7 2.7505 -3.5423 -0.0006 10 6 2.3108 -4.9398 -0.0002 11 6 3.5336 -5.8593 0.0004 12 1 4.0193 -5.9165 -0.9739 13 6 3.2658 -7.2328 0.6317 14 6 4.6749 -7.0486 1.2124 15 7 4.4693 -5.5919 1.1084 16 6 5.6831 -4.9222 0.6225 17 6 6.7800 -5.0658 1.6459 18 8 6.5416 -5.5679 2.7240 19 7 8.0259 -4.6363 1.3633 20 6 9.0238 -4.7675 2.2941 21 1 8.8117 -5.2152 3.2538 22 6 10.3081 -4.3242 2.0028 23 7 11.2635 -4.4449 2.8971 24 14 10.6751 -3.5504 0.3428 25 1 10.4545 -2.0840 0.4205 26 1 12.0879 -3.8195 -0.0274 27 1 9.7748 -4.1326 -0.6846 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 3.6974 -3.3319 -0.0002 32 1 1.7114 -5.1323 -0.8900 33 1 1.7118 -5.1320 0.8900 34 1 3.1828 -8.0465 -0.0888 35 1 2.4719 -7.2335 1.3785 36 1 5.4650 -7.4231 0.5616 37 1 4.7719 -7.4013 2.2391 38 1 5.4744 -3.8649 0.4596 39 1 5.9993 -5.3789 -0.3154 40 1 8.2164 -4.2346 0.5012 41 1 12.1601 -4.1359 2.6937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754472098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:37 Heat of formation + Delta-G solvation = 20.188277 kcal Electronic energy + Delta-G solvation = -26782.837132 eV Core-core repulsion = 22826.015304 eV Total energy + Delta-G solvation = -3956.821829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12297 -41.67738 -40.45400 -39.62031 -36.03814 -35.72831 -34.38864 -33.77820 -32.21437 -30.54542 -28.58013 -28.02485 -27.62863 -25.17865 -24.59410 -23.13383 -21.63052 -21.28649 -20.65034 -20.26409 -19.61023 -18.76850 -17.79320 -17.35209 -17.19569 -16.96200 -16.69097 -16.33994 -16.05212 -15.79089 -15.30941 -15.25221 -15.05025 -14.78381 -14.38722 -14.19154 -14.10129 -13.94759 -13.79666 -13.53915 -13.16785 -12.93812 -12.81118 -12.58414 -12.42020 -12.35084 -11.99300 -11.89841 -11.70675 -11.51670 -11.45971 -11.14950 -11.00276 -10.84279 -10.40191 -10.24683 -10.19088 -9.79250 -8.40911 -6.02042 -1.42116 -0.29493 0.33323 0.78351 1.29662 1.36315 1.44955 1.77082 1.86003 1.95408 2.23494 2.66339 2.77729 3.11287 3.15703 3.44234 3.52705 3.61203 3.77463 4.02222 4.11263 4.22509 4.26759 4.35901 4.40916 4.45145 4.66364 4.67373 4.76729 4.89646 4.92533 5.04586 5.12346 5.20180 5.28740 5.40114 5.53754 5.92627 6.05141 6.20091 6.51083 6.59312 6.88441 6.88773 7.39654 7.96786 8.76725 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.003614 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.721331 B = 7745.631831 C =10007.586845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.097 3.903 3 N -0.273 5.273 4 N -0.281 5.281 5 S 0.474 5.526 6 C -0.309 4.309 7 C 0.606 3.394 8 O -0.539 6.539 9 N -0.706 5.706 10 C 0.142 3.858 11 C 0.015 3.985 12 H 0.115 0.885 13 C -0.115 4.115 14 C 0.003 3.997 15 N -0.469 5.469 16 C 0.012 3.988 17 C 0.450 3.550 18 O -0.608 6.608 19 N -0.590 5.590 20 C -0.326 4.326 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.936 5.936 24 Si 0.961 3.039 25 H -0.256 1.256 26 H -0.278 1.278 27 H -0.225 1.225 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.403 0.597 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.390 0.610 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 2.662 -16.363 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 N -0.138 5.138 4 N -0.261 5.261 5 S 0.610 5.390 6 C -0.450 4.450 7 C 0.389 3.611 8 O -0.417 6.417 9 N -0.358 5.358 10 C 0.019 3.981 11 C -0.095 4.095 12 H 0.133 0.867 13 C -0.153 4.153 14 C -0.126 4.126 15 N -0.192 5.192 16 C -0.120 4.120 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.232 5.232 20 C -0.455 4.455 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.781 3.219 25 H -0.181 1.181 26 H -0.204 1.204 27 H -0.148 1.148 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.239 0.761 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.226 0.774 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.014 3.700 -14.984 24.489 hybrid contribution 0.756 -0.278 -0.573 0.989 sum -18.257 3.422 -15.557 24.230 Atomic orbital electron populations 1.20605 0.82298 1.05503 1.05042 1.23342 1.01230 0.84782 0.95713 1.70674 0.97047 1.28815 1.17233 1.78726 1.09714 1.17498 1.20205 1.82512 1.08210 0.99866 1.48382 1.27831 0.99068 0.99957 1.18163 1.16402 0.85729 0.82162 0.76757 1.90794 1.16508 1.83406 1.51029 1.45824 1.09518 1.06672 1.73750 1.21542 0.95845 0.77273 1.03454 1.23937 0.94055 0.95626 0.95843 0.86747 1.23149 0.95905 0.95896 1.00312 1.23572 0.98374 0.89040 1.01584 1.68920 1.08581 1.10971 1.30760 1.22616 0.90324 1.03071 0.95962 1.20791 0.83708 0.82242 0.89535 1.90576 1.82633 1.48528 1.27406 1.42027 1.08353 1.56630 1.16151 1.18962 0.89278 1.39830 0.97466 0.92836 1.26121 0.94324 0.97657 1.03282 1.69809 1.02956 1.47595 1.37288 0.85425 0.79284 0.79601 0.77624 1.18087 1.20371 1.14805 0.88565 0.88401 0.88310 0.76090 0.88464 0.91256 0.87280 0.88541 0.91197 0.92469 0.86775 0.88498 0.77433 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 9.90 71.24 0.71 -0.47 16 2 C 0.10 2.04 7.00 42.65 0.30 2.34 16 3 N -0.27 -6.60 11.54 -48.18 -0.56 -7.16 16 4 N -0.28 -6.75 12.51 37.02 0.46 -6.29 16 5 S 0.47 8.73 23.05 -56.49 -1.30 7.43 16 6 C -0.31 -6.22 6.81 24.62 0.17 -6.05 16 7 C 0.61 12.51 7.80 86.59 0.68 13.19 16 8 O -0.54 -13.28 14.89 -4.09 -0.06 -13.34 16 9 N -0.71 -12.11 5.46 -466.63 -2.55 -14.66 16 10 C 0.14 2.14 5.81 86.38 0.50 2.64 16 11 C 0.01 0.22 3.25 42.19 0.14 0.35 16 12 H 0.11 1.11 7.63 -2.38 -0.02 1.09 16 13 C -0.11 -1.70 8.00 30.94 0.25 -1.46 16 14 C 0.00 0.08 6.34 83.58 0.53 0.61 16 15 N -0.47 -11.57 5.74 -906.74 -5.21 -16.77 16 16 C 0.01 0.30 5.10 85.56 0.44 0.74 16 17 C 0.45 18.56 7.46 87.66 0.65 19.22 16 18 O -0.61 -31.85 14.98 -3.07 -0.05 -31.89 16 19 N -0.59 -25.76 5.09 -306.98 -1.56 -27.32 16 20 C -0.33 -18.34 10.16 84.04 0.85 -17.49 16 21 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.94 -55.34 13.96 21.66 0.30 -55.04 16 24 Si 0.96 36.71 27.74 68.60 1.90 38.62 16 25 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 26 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.23 -6.91 6.52 99.48 0.65 -6.26 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.63 6.47 -2.39 -0.02 1.61 16 31 H 0.40 6.20 5.76 -92.71 -0.53 5.67 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.25 7.87 -2.39 -0.02 1.23 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.47 7.94 -2.39 -0.02 1.46 16 36 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 37 H 0.06 1.84 7.97 -2.39 -0.02 1.82 16 38 H 0.11 2.22 6.56 -2.39 -0.02 2.20 16 39 H 0.10 1.78 7.56 -2.39 -0.02 1.76 16 40 H 0.39 13.69 5.76 -92.71 -0.53 13.16 16 41 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -80.83 358.43 -2.96 -83.79 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.02 Total: 29.38 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.68 Total: 13.26 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -9.11 Total: -127.24 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.11 Total: -45.23 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.90 Total: 38.62 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -1.30 Total: 7.43 kcal Total: -80.83 -2.96 -83.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.975 kcal (2) G-P(sol) polarization free energy of solvation -80.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds