Wall clock time and date at job start Tue Mar 31 2020 22:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31232 * 124.05941 * 2 1 4 4 N 1.27330 * 120.04191 * 179.97438 * 3 2 1 5 5 S 1.56636 * 109.74056 * 0.02562 * 4 3 2 6 6 C 1.38245 * 124.05220 * 179.97438 * 2 1 3 7 7 C 1.47175 * 128.47706 * 0.02562 * 6 2 1 8 8 O 1.21618 * 119.99865 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99928 * 180.02562 * 7 6 2 10 10 C 1.46498 * 119.99999 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47451 * 175.58872 * 10 9 7 12 12 N 1.46897 * 115.54911 * 279.61567 * 11 10 9 13 13 C 1.46890 * 111.00376 * 294.62625 * 12 11 10 14 14 C 1.50698 * 109.47555 * 179.59558 * 13 12 11 15 15 O 1.21297 * 120.00014 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00067 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99700 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00111 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99474 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00550 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99702 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47140 * 89.99804 * 21 19 17 23 23 H 1.48498 * 109.46895 * 210.00064 * 21 19 17 24 24 H 1.48500 * 109.46892 * 329.99790 * 21 19 17 25 25 C 1.52997 * 117.50114 * 133.94123 * 11 10 9 26 26 C 1.53003 * 117.49855 * 65.28257 * 11 10 9 27 27 H 1.08996 * 109.47197 * 90.02339 * 1 2 3 28 28 H 1.09002 * 109.47099 * 210.02727 * 1 2 3 29 29 H 1.09005 * 109.46607 * 330.02249 * 1 2 3 30 30 H 0.97001 * 120.00543 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47448 * 295.58833 * 10 9 7 32 32 H 1.09003 * 109.47283 * 55.58947 * 10 9 7 33 33 H 1.00908 * 110.99832 * 170.66948 * 12 11 10 34 34 H 1.09005 * 109.47070 * 299.59459 * 13 12 11 35 35 H 1.09001 * 109.47618 * 59.59308 * 13 12 11 36 36 H 0.97001 * 120.00228 * 0.02562 * 16 14 13 37 37 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 38 38 H 1.09002 * 117.49830 * 0.02562 * 25 11 10 39 39 H 1.09002 * 117.49980 * 145.02045 * 25 11 10 40 40 H 1.08996 * 117.50024 * 214.98340 * 26 11 10 41 41 H 1.09003 * 117.49694 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0872 0.0000 4 7 3.5122 0.9980 0.0005 5 16 3.9367 -0.5098 0.0004 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0006 8 8 0.6521 -2.8131 -0.0002 9 7 2.7503 -3.5424 0.0017 10 6 2.3105 -4.9398 0.0024 11 6 3.5293 -5.8582 -0.1074 12 7 4.0716 -6.0322 -1.4615 13 6 3.1095 -6.7247 -2.3290 14 6 3.6956 -6.8757 -3.7091 15 8 4.8059 -6.4489 -3.9466 16 7 2.9864 -7.4860 -4.6793 17 6 3.5199 -7.6239 -5.9348 18 1 4.5085 -7.2439 -6.1462 19 6 2.7886 -8.2526 -6.9350 20 7 1.5856 -8.7146 -6.6780 21 14 3.5157 -8.4412 -8.6454 22 1 4.2607 -9.7231 -8.7281 23 1 2.4229 -8.4379 -9.6509 24 1 4.4415 -7.3122 -8.9169 25 6 3.5982 -7.0571 0.8405 26 6 4.5225 -5.8563 1.0564 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 3.6973 -3.3321 0.0020 31 1 1.7776 -5.1526 0.9291 32 1 1.6479 -5.1126 -0.8457 33 1 4.9540 -6.5210 -1.4376 34 1 2.8923 -7.7101 -1.9167 35 1 2.1889 -6.1440 -2.3869 36 1 2.0987 -7.8277 -4.4893 37 1 1.0752 -9.1538 -7.3762 38 1 2.7750 -7.1919 1.5422 39 1 4.0462 -7.9749 0.4596 40 1 5.5782 -5.9844 0.8174 41 1 4.3078 -5.2004 1.9001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754507347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:22 Heat of formation + Delta-G solvation = 30.128615 kcal Electronic energy + Delta-G solvation = -26169.207820 eV Core-core repulsion = 22212.817037 eV Total energy + Delta-G solvation = -3956.390783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25803 -40.00285 -38.84075 -37.82834 -34.55606 -34.04140 -33.56225 -32.69763 -31.23031 -29.43468 -27.32431 -26.88280 -26.55995 -24.13539 -22.97045 -22.43742 -20.67843 -19.86829 -19.30404 -18.78572 -17.94729 -17.72959 -16.63803 -16.35078 -16.17903 -15.64795 -15.47167 -14.90754 -14.59843 -14.51815 -14.25977 -14.11188 -13.98674 -13.38150 -13.30708 -13.27512 -12.90582 -12.71371 -12.57484 -12.29100 -11.84738 -11.79463 -11.71901 -11.52928 -11.14529 -10.95396 -10.65690 -10.48057 -10.42172 -10.26587 -10.22078 -10.14848 -10.01627 -9.55173 -9.35129 -8.51160 -8.17616 -8.00793 -6.45467 -3.86666 -0.57008 0.51050 1.16596 1.64280 2.59151 2.72241 3.15064 3.24314 3.29837 3.48891 3.59841 3.83858 3.96983 4.19602 4.25442 4.33276 4.40459 4.54937 4.72617 4.99940 5.04737 5.20965 5.32122 5.33018 5.39804 5.43756 5.45085 5.56854 5.66216 5.76444 5.83999 5.86407 5.90703 6.05777 6.19878 7.01891 7.08235 7.35462 7.45043 7.51526 7.76664 8.01418 8.56026 9.13453 9.49253 9.99927 10.72061 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002577 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.308718 B =10864.769240 C =11876.392032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.102 3.898 3 N -0.252 5.252 4 N -0.254 5.254 5 S 0.424 5.576 6 C -0.293 4.293 7 C 0.603 3.397 8 O -0.516 6.516 9 N -0.706 5.706 10 C 0.168 3.832 11 C 0.034 3.966 12 N -0.627 5.627 13 C 0.050 3.950 14 C 0.439 3.561 15 O -0.585 6.585 16 N -0.561 5.561 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.900 5.900 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.202 4.202 26 C -0.167 4.167 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.404 0.596 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.356 0.644 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.393 0.607 37 H 0.272 0.728 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 9.963 19.181 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.118 5.118 4 N -0.234 5.234 5 S 0.560 5.440 6 C -0.434 4.434 7 C 0.386 3.614 8 O -0.393 6.393 9 N -0.358 5.358 10 C 0.044 3.956 11 C -0.060 4.060 12 N -0.258 5.258 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.469 6.469 16 N -0.197 5.197 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.541 5.541 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.243 4.243 26 C -0.205 4.205 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.239 0.761 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.176 0.824 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.366 11.707 18.627 22.043 hybrid contribution -0.904 -1.789 -0.549 2.078 sum 0.462 9.918 18.078 20.625 Atomic orbital electron populations 1.20548 0.83697 1.04932 1.04589 1.22977 1.00273 0.85007 0.96234 1.70624 0.96920 1.27981 1.16280 1.78864 1.09468 1.15784 1.19325 1.82641 1.09613 1.01356 1.50377 1.27734 0.98230 0.99968 1.17479 1.16384 0.85908 0.81938 0.77171 1.90824 1.15730 1.83045 1.49711 1.45726 1.09663 1.06015 1.74354 1.20824 0.94008 0.77789 1.02956 1.21856 0.97751 0.99400 0.86981 1.59867 1.05789 1.54982 1.05176 1.21693 0.96232 0.97269 0.93060 1.19739 0.87403 0.84365 0.86012 1.90527 1.20685 1.53282 1.82435 1.41857 1.17543 1.50770 1.09574 1.19696 1.02415 1.35324 0.85590 0.87907 1.25268 0.95548 0.96778 1.00261 1.69608 1.10640 1.38932 1.34935 0.85860 0.78409 0.78868 0.81178 1.20394 1.20874 1.19378 1.23644 1.03026 0.93600 1.04022 1.23188 0.97159 1.01442 0.98702 0.89132 0.88015 0.89888 0.76064 0.90414 0.89662 0.82365 0.93350 0.89452 0.77418 0.91796 0.88285 0.88249 0.87969 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.90 36.01 0.36 -0.33 16 2 C 0.10 1.13 7.00 -82.84 -0.58 0.55 16 3 N -0.25 -3.05 11.54 33.42 0.39 -2.67 16 4 N -0.25 -2.93 12.51 60.35 0.75 -2.18 16 5 S 0.42 3.76 23.05 -107.50 -2.48 1.28 16 6 C -0.29 -3.11 6.81 -35.95 -0.24 -3.36 16 7 C 0.60 6.99 7.80 -12.63 -0.10 6.89 16 8 O -0.52 -7.23 14.89 5.26 0.08 -7.15 16 9 N -0.71 -7.12 5.51 -61.46 -0.34 -7.46 16 10 C 0.17 1.74 5.68 -4.04 -0.02 1.72 16 11 C 0.03 0.34 1.81 -131.60 -0.24 0.10 16 12 N -0.63 -8.83 6.29 -101.22 -0.64 -9.47 16 13 C 0.05 0.81 6.01 -4.98 -0.03 0.78 16 14 C 0.44 9.97 7.82 -10.98 -0.09 9.89 16 15 O -0.58 -15.28 15.79 5.54 0.09 -15.19 16 16 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 21 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 C -0.20 -1.74 10.07 -26.70 -0.27 -2.01 16 26 C -0.17 -1.31 9.89 -26.69 -0.26 -1.58 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.95 6.47 -51.93 -0.34 0.62 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.40 3.49 7.84 -40.82 -0.32 3.17 16 31 H 0.08 0.71 7.94 -51.93 -0.41 0.29 16 32 H 0.09 1.05 6.52 -51.93 -0.34 0.71 16 33 H 0.36 5.18 8.32 -39.29 -0.33 4.85 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.37 6.62 -51.93 -0.34 1.03 16 36 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -32.77 370.76 -7.50 -40.27 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -4.87 Total: 13.88 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.72 Total: 4.76 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.83 Total: -59.26 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.17 Total: -22.34 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.48 Total: 1.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.77 -7.50 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754507347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.402 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds