Wall clock time and date at job start Tue Mar 31 2020 22:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31232 * 124.05941 * 2 1 4 4 N 1.27330 * 120.04191 * 179.97438 * 3 2 1 5 5 S 1.56636 * 109.74056 * 0.02562 * 4 3 2 6 6 C 1.38245 * 124.05220 * 179.97438 * 2 1 3 7 7 C 1.47175 * 128.47706 * 0.02562 * 6 2 1 8 8 O 1.21618 * 119.99865 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99928 * 180.02562 * 7 6 2 10 10 C 1.46498 * 119.99999 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47451 * 175.58872 * 10 9 7 12 12 N 1.46897 * 115.54911 * 279.61567 * 11 10 9 13 13 C 1.46890 * 111.00376 * 294.62625 * 12 11 10 14 14 C 1.50698 * 109.47555 * 179.59558 * 13 12 11 15 15 O 1.21297 * 120.00014 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00067 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99700 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00111 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99474 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00550 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99702 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47140 * 89.99804 * 21 19 17 23 23 H 1.48498 * 109.46895 * 210.00064 * 21 19 17 24 24 H 1.48500 * 109.46892 * 329.99790 * 21 19 17 25 25 C 1.52997 * 117.50114 * 133.94123 * 11 10 9 26 26 C 1.53003 * 117.49855 * 65.28257 * 11 10 9 27 27 H 1.08996 * 109.47197 * 90.02339 * 1 2 3 28 28 H 1.09002 * 109.47099 * 210.02727 * 1 2 3 29 29 H 1.09005 * 109.46607 * 330.02249 * 1 2 3 30 30 H 0.97001 * 120.00543 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47448 * 295.58833 * 10 9 7 32 32 H 1.09003 * 109.47283 * 55.58947 * 10 9 7 33 33 H 1.00908 * 110.99832 * 170.66948 * 12 11 10 34 34 H 1.09005 * 109.47070 * 299.59459 * 13 12 11 35 35 H 1.09001 * 109.47618 * 59.59308 * 13 12 11 36 36 H 0.97001 * 120.00228 * 0.02562 * 16 14 13 37 37 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 38 38 H 1.09002 * 117.49830 * 0.02562 * 25 11 10 39 39 H 1.09002 * 117.49980 * 145.02045 * 25 11 10 40 40 H 1.08996 * 117.50024 * 214.98340 * 26 11 10 41 41 H 1.09003 * 117.49694 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0872 0.0000 4 7 3.5122 0.9980 0.0005 5 16 3.9367 -0.5098 0.0004 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0006 8 8 0.6521 -2.8131 -0.0002 9 7 2.7503 -3.5424 0.0017 10 6 2.3105 -4.9398 0.0024 11 6 3.5293 -5.8582 -0.1074 12 7 4.0716 -6.0322 -1.4615 13 6 3.1095 -6.7247 -2.3290 14 6 3.6956 -6.8757 -3.7091 15 8 4.8059 -6.4489 -3.9466 16 7 2.9864 -7.4860 -4.6793 17 6 3.5199 -7.6239 -5.9348 18 1 4.5085 -7.2439 -6.1462 19 6 2.7886 -8.2526 -6.9350 20 7 1.5856 -8.7146 -6.6780 21 14 3.5157 -8.4412 -8.6454 22 1 4.2607 -9.7231 -8.7281 23 1 2.4229 -8.4379 -9.6509 24 1 4.4415 -7.3122 -8.9169 25 6 3.5982 -7.0571 0.8405 26 6 4.5225 -5.8563 1.0564 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 3.6973 -3.3321 0.0020 31 1 1.7776 -5.1526 0.9291 32 1 1.6479 -5.1126 -0.8457 33 1 4.9540 -6.5210 -1.4376 34 1 2.8923 -7.7101 -1.9167 35 1 2.1889 -6.1440 -2.3869 36 1 2.0987 -7.8277 -4.4893 37 1 1.0752 -9.1538 -7.3762 38 1 2.7750 -7.1919 1.5422 39 1 4.0462 -7.9749 0.4596 40 1 5.5782 -5.9844 0.8174 41 1 4.3078 -5.2004 1.9001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754507347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:22 Heat of formation + Delta-G solvation = 3.607404 kcal Electronic energy + Delta-G solvation = -26170.357866 eV Core-core repulsion = 22212.817037 eV Total energy + Delta-G solvation = -3957.540829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08702 -40.91304 -40.19428 -39.16323 -36.02833 -35.40624 -34.36285 -33.91492 -33.19608 -30.23538 -28.26740 -28.09677 -27.61511 -25.87236 -23.74873 -23.17609 -21.54082 -21.10988 -20.69751 -19.91397 -19.56091 -18.62902 -17.88597 -17.26680 -17.09510 -16.94155 -16.56522 -16.40574 -15.90585 -15.77585 -15.51334 -15.30570 -15.00674 -14.63964 -14.14767 -14.12013 -13.98090 -13.79244 -13.56200 -13.51412 -13.47776 -12.95929 -12.86067 -12.56811 -12.42577 -12.37447 -12.13507 -11.88330 -11.51920 -11.49766 -11.25639 -11.09358 -10.97086 -10.80757 -10.32645 -10.19764 -10.02258 -9.26283 -8.47370 -5.96205 -1.39276 -0.26709 0.37308 0.80053 1.37249 1.41386 1.53879 1.75204 1.86682 2.04113 2.27276 2.64125 2.79435 3.03296 3.20186 3.42530 3.45950 3.61117 3.61478 3.80951 4.02891 4.23261 4.28163 4.46839 4.52096 4.59810 4.66222 4.67747 4.76676 4.79800 4.81806 5.03802 5.11705 5.23693 5.27150 5.40264 5.85687 6.06451 6.25372 6.36271 6.54226 6.58583 6.92030 7.11674 7.55346 8.09890 8.69984 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002577 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.308718 B =10864.769240 C =11876.392032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.096 3.904 3 N -0.274 5.274 4 N -0.284 5.284 5 S 0.498 5.502 6 C -0.312 4.312 7 C 0.603 3.397 8 O -0.545 6.545 9 N -0.698 5.698 10 C 0.169 3.831 11 C 0.017 3.983 12 N -0.638 5.638 13 C 0.067 3.933 14 C 0.438 3.562 15 O -0.621 6.621 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.080 0.920 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.194 4.194 26 C -0.147 4.147 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.412 0.588 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.352 0.648 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 9.677 20.387 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.139 5.139 4 N -0.264 5.264 5 S 0.634 5.366 6 C -0.453 4.453 7 C 0.387 3.613 8 O -0.424 6.424 9 N -0.349 5.349 10 C 0.046 3.954 11 C -0.076 4.076 12 N -0.269 5.269 13 C -0.065 4.065 14 C 0.226 3.774 15 O -0.508 6.508 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.234 4.234 26 C -0.184 4.184 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.248 0.752 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.780 11.423 19.863 22.983 hybrid contribution -0.940 -1.717 -0.850 2.134 sum 0.841 9.706 19.013 21.364 Atomic orbital electron populations 1.20583 0.82735 1.05396 1.04859 1.23276 1.01112 0.84962 0.95865 1.70672 0.97149 1.28681 1.17440 1.78639 1.09606 1.17925 1.20275 1.82304 1.07423 0.99093 1.47806 1.27754 0.99679 0.99573 1.18254 1.16482 0.85670 0.82393 0.76749 1.90807 1.16881 1.83532 1.51154 1.45700 1.09872 1.05819 1.73548 1.20825 0.93885 0.77789 1.02920 1.21811 0.99011 1.01132 0.85643 1.59816 1.05228 1.54551 1.07316 1.21475 0.96447 0.98932 0.89674 1.20833 0.86662 0.82121 0.87790 1.90493 1.22417 1.54243 1.83621 1.41944 1.17892 1.51728 1.09495 1.19658 1.02155 1.36981 0.87476 0.90234 1.26030 0.95834 0.95948 1.03438 1.69670 1.11307 1.39007 1.36135 0.84949 0.77876 0.78777 0.76885 1.19492 1.19695 1.19773 1.23683 1.03630 0.93033 1.03058 1.23308 0.96833 1.00859 0.97430 0.88896 0.88557 0.88343 0.75185 0.88629 0.91825 0.82783 0.91300 0.88588 0.77054 0.91304 0.86637 0.88766 0.87681 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.90 71.24 0.70 -0.62 16 2 C 0.10 2.06 7.00 42.65 0.30 2.36 16 3 N -0.27 -6.52 11.54 -48.18 -0.56 -7.07 16 4 N -0.28 -6.31 12.51 37.02 0.46 -5.85 16 5 S 0.50 8.04 23.05 -56.49 -1.30 6.74 16 6 C -0.31 -6.33 6.81 24.62 0.17 -6.16 16 7 C 0.60 13.41 7.80 86.59 0.68 14.09 16 8 O -0.54 -15.02 14.89 -4.09 -0.06 -15.08 16 9 N -0.70 -12.90 5.51 -466.63 -2.57 -15.48 16 10 C 0.17 3.20 5.68 86.38 0.49 3.69 16 11 C 0.02 0.30 1.81 3.53 0.01 0.31 16 12 N -0.64 -17.19 6.29 -474.17 -2.98 -20.17 16 13 C 0.07 2.14 6.01 85.56 0.51 2.65 16 14 C 0.44 20.12 7.82 87.66 0.69 20.80 16 15 O -0.62 -33.07 15.79 -3.08 -0.05 -33.11 16 16 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 17 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 20 N -0.92 -49.49 13.05 21.66 0.28 -49.20 16 21 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C -0.19 -2.75 10.07 30.62 0.31 -2.44 16 26 C -0.15 -1.82 9.89 30.62 0.30 -1.52 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.10 1.80 6.47 -2.39 -0.02 1.78 16 29 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.41 6.21 7.84 -92.71 -0.73 5.49 16 31 H 0.10 1.49 7.94 -2.39 -0.02 1.47 16 32 H 0.06 1.51 6.52 -2.39 -0.02 1.49 16 33 H 0.35 9.89 8.32 -89.69 -0.75 9.15 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.10 2.95 6.62 -2.39 -0.02 2.94 16 36 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 37 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.12 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -71.63 370.76 -2.01 -73.64 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -1.08 Total: 36.45 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.43 Total: 15.05 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.99 Total: -128.36 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -0.11 Total: -48.20 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -1.30 Total: 6.74 kcal Total: -71.63 -2.01 -73.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754507347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.248 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds