Wall clock time and date at job start Tue Mar 31 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48505 * 109.47043 * 269.99514 * 3 2 1 5 5 H 1.48503 * 109.47356 * 29.99954 * 3 2 1 6 6 H 1.48500 * 109.47241 * 149.99993 * 3 2 1 7 7 C 1.38954 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00050 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99835 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99984 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99849 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00175 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99849 * 176.45728 * 13 12 10 15 15 C 1.52997 * 112.85030 * 294.64619 * 14 13 12 16 16 N 1.46505 * 109.47203 * 311.61518 * 15 14 13 17 17 C 1.34775 * 120.00012 * 174.98372 * 16 15 14 18 18 O 1.21563 * 120.00126 * 359.97438 * 17 16 15 19 19 C 1.47757 * 119.99650 * 179.97438 * 17 16 15 20 20 C 1.39354 * 124.11462 * 180.02562 * 19 17 16 21 21 N 1.30084 * 112.14555 * 179.97438 * 20 19 17 22 22 S 1.55924 * 108.75586 * 359.97438 * 21 20 19 23 23 N 1.31483 * 124.11654 * 359.70238 * 19 17 16 24 24 C 1.53775 * 113.61372 * 163.45164 * 14 13 12 25 25 C 1.53961 * 87.01771 * 220.04724 * 24 14 13 26 26 C 1.53776 * 113.61354 * 65.84130 * 14 13 12 27 27 H 0.96993 * 120.00180 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00548 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47083 * 59.99839 * 12 10 9 30 30 H 1.08997 * 109.46635 * 299.99854 * 12 10 9 31 31 H 1.00896 * 110.99917 * 300.41246 * 13 12 10 32 32 H 1.09003 * 109.47189 * 71.60939 * 15 14 13 33 33 H 1.08996 * 109.47109 * 191.61110 * 15 14 13 34 34 H 0.97000 * 119.99412 * 354.97871 * 16 15 14 35 35 H 1.08002 * 123.92680 * 359.97438 * 20 19 17 36 36 H 1.09005 * 113.61386 * 334.56205 * 24 14 13 37 37 H 1.08995 * 113.62048 * 105.47007 * 24 14 13 38 38 H 1.08994 * 113.53660 * 270.80993 * 25 24 14 39 39 H 1.09002 * 113.66453 * 139.93276 * 25 24 14 40 40 H 1.09000 * 113.61794 * 254.52730 * 26 14 13 41 41 H 1.09005 * 113.61852 * 25.43655 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5608 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5164 -3.7957 -0.0831 15 6 8.0500 -3.2513 -1.4096 16 7 7.3122 -3.8599 -2.5194 17 6 7.5417 -3.4543 -3.7840 18 8 8.3607 -2.5833 -4.0038 19 6 6.7980 -4.0686 -4.9033 20 6 6.9671 -3.7161 -6.2409 21 7 6.1954 -4.4039 -7.0305 22 16 5.3485 -5.3903 -6.1697 23 7 5.9004 -5.0185 -4.7591 24 6 8.1194 -5.1539 0.3125 25 6 9.2307 -4.3622 1.0255 26 6 8.2210 -3.2092 1.1515 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3634 -0.0004 29 1 5.9241 -1.8560 0.8905 30 1 5.9240 -1.8576 -0.8894 31 1 5.7214 -4.2551 0.8142 32 1 7.9200 -2.1694 -1.4370 33 1 9.1089 -3.4925 -1.5017 34 1 6.6585 -4.5547 -2.3439 35 1 7.6585 -2.9599 -6.5822 36 1 7.4899 -5.7302 0.9907 37 1 8.4742 -5.7381 -0.5365 38 1 10.0804 -4.1303 0.3835 39 1 9.5269 -4.7899 1.9834 40 1 8.6579 -2.2256 0.9788 41 1 7.6195 -3.2528 2.0595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754978061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:12 Heat of formation + Delta-G solvation = 21.367053 kcal Electronic energy + Delta-G solvation = -27031.498810 eV Core-core repulsion = 23074.728097 eV Total energy + Delta-G solvation = -3956.770713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27654 -40.28902 -38.79429 -38.18306 -34.65965 -34.18089 -33.63856 -33.22659 -31.65422 -28.62970 -27.36386 -26.64577 -25.87427 -24.18760 -23.14545 -22.20039 -20.46272 -19.56071 -19.38543 -19.15084 -18.35243 -17.61054 -16.79187 -16.23026 -15.99776 -15.74424 -15.44682 -15.18893 -14.87657 -14.68972 -14.54591 -14.10204 -13.85861 -13.24376 -13.18657 -12.83717 -12.56624 -12.41591 -12.41263 -12.30283 -12.00460 -11.62061 -11.48775 -11.36138 -11.22613 -11.19573 -11.08764 -10.84858 -10.60266 -10.47401 -10.25074 -9.98730 -9.57965 -9.44193 -9.10690 -8.63225 -8.20558 -8.16199 -6.32296 -3.83601 0.26854 1.22085 1.37239 1.44553 2.91146 3.01597 3.02213 3.06704 3.14538 3.72898 3.96195 4.09513 4.30100 4.30525 4.39300 4.43278 4.60243 4.72775 4.82540 4.94588 5.18578 5.21611 5.26804 5.36287 5.44205 5.50653 5.55872 5.64286 5.69027 5.74440 5.80674 5.89666 5.92745 6.09729 6.18983 6.30411 7.01182 7.42397 7.48284 7.56999 8.00437 8.13187 8.58574 8.93866 9.41439 9.81645 10.80838 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007828 B = 0.003936 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.869568 B = 7111.291727 C = 9369.163664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.651 5.651 14 C 0.079 3.921 15 C 0.150 3.850 16 N -0.689 5.689 17 C 0.603 3.397 18 O -0.534 6.534 19 C 0.011 3.989 20 C 0.088 3.912 21 N -0.582 5.582 22 S 0.724 5.276 23 N -0.537 5.537 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.166 4.166 27 H 0.273 0.727 28 H 0.370 0.630 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.356 0.644 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.422 0.578 35 H 0.213 0.787 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.526 -8.762 -5.728 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.445 6.445 12 C -0.084 4.084 13 N -0.283 5.283 14 C -0.014 4.014 15 C 0.026 3.974 16 N -0.341 5.341 17 C 0.383 3.617 18 O -0.410 6.410 19 C -0.164 4.164 20 C -0.106 4.106 21 N -0.423 5.423 22 S 0.765 5.235 23 N -0.387 5.387 24 C -0.165 4.165 25 C -0.178 4.178 26 C -0.206 4.206 27 H 0.084 0.916 28 H 0.202 0.798 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.177 0.823 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.260 0.740 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.911 -10.239 -7.139 21.831 hybrid contribution 1.610 2.764 1.503 3.534 sum 19.521 -7.476 -5.636 21.650 Atomic orbital electron populations 1.69617 1.05629 1.27491 1.49396 1.25028 0.95477 0.97937 0.97643 0.86694 0.79767 0.84114 0.78956 1.19604 1.20142 1.19529 1.19419 0.79230 0.96591 1.48079 0.86300 1.42211 1.07535 1.06170 1.67123 1.19698 0.88136 0.84566 0.83994 1.90567 1.69426 1.30862 1.53654 1.21668 0.95010 0.90392 1.01337 1.59830 1.05978 1.13716 1.48810 1.22564 0.88112 0.97310 0.93404 1.21130 0.95199 0.98073 0.82988 1.45599 1.42688 1.41331 1.04471 1.16729 0.81515 0.81789 0.81628 1.90817 1.34883 1.31146 1.84193 1.22481 0.99442 0.97986 0.96513 1.23751 0.98977 1.00267 0.87572 1.72248 1.15013 1.15373 1.39625 1.79148 1.32264 1.29589 0.82472 1.72487 1.15022 1.17926 1.33234 1.23124 0.97273 0.95492 1.00649 1.22804 0.96817 0.97129 1.01015 1.23634 0.99051 0.99059 0.98868 0.91616 0.79759 0.93480 0.89717 0.82310 0.90699 0.90518 0.73953 0.77043 0.89310 0.90835 0.89962 0.91136 0.90999 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.54 27.74 -169.99 -4.71 14.83 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 10 C 0.45 10.03 7.83 -10.98 -0.09 9.94 16 11 O -0.56 -14.74 15.86 5.54 0.09 -14.66 16 12 C 0.05 0.77 5.80 -4.97 -0.03 0.74 16 13 N -0.65 -8.99 5.36 -100.40 -0.54 -9.53 16 14 C 0.08 0.81 0.77 -130.80 -0.10 0.71 16 15 C 0.15 1.65 4.49 -4.04 -0.02 1.63 16 16 N -0.69 -8.61 5.38 -61.28 -0.33 -8.94 16 17 C 0.60 8.16 7.82 -12.37 -0.10 8.06 16 18 O -0.53 -8.09 16.80 5.31 0.09 -8.00 16 19 C 0.01 0.14 6.81 -83.71 -0.57 -0.43 16 20 C 0.09 0.98 11.22 -17.88 -0.20 0.78 16 21 N -0.58 -6.52 11.41 19.42 0.22 -6.30 16 22 S 0.72 7.11 23.69 -107.50 -2.55 4.56 16 23 N -0.54 -6.71 11.00 23.17 0.26 -6.45 16 24 C -0.13 -1.10 7.36 -25.83 -0.19 -1.29 16 25 C -0.14 -1.05 7.74 -25.83 -0.20 -1.25 16 26 C -0.17 -1.47 6.61 -25.92 -0.17 -1.64 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.37 7.81 5.76 -40.82 -0.24 7.58 16 29 H 0.05 0.66 7.62 -51.93 -0.40 0.27 16 30 H 0.08 1.30 6.85 -51.93 -0.36 0.95 16 31 H 0.36 5.06 8.38 -39.29 -0.33 4.73 16 32 H 0.07 0.88 7.33 -51.93 -0.38 0.50 16 33 H 0.08 0.74 7.35 -51.93 -0.38 0.36 16 34 H 0.42 5.58 7.70 -40.82 -0.31 5.26 16 35 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.08 0.56 7.66 -51.93 -0.40 0.16 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -33.90 362.01 -8.08 -41.98 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -4.87 Total: 16.60 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -1.91 Total: 9.55 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: 0.33 Total: -70.33 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.18 Total: -22.66 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.83 kcal Atomic # 16 Polarization: 7.11 SS G_CDS: -2.55 Total: 4.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.90 -8.08 -41.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754978061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.348 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds