Wall clock time and date at job start Tue Mar 31 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48505 * 109.47043 * 269.99514 * 3 2 1 5 5 H 1.48503 * 109.47356 * 29.99954 * 3 2 1 6 6 H 1.48500 * 109.47241 * 149.99993 * 3 2 1 7 7 C 1.38954 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00050 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99835 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99984 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99849 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00175 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99849 * 176.45728 * 13 12 10 15 15 C 1.52997 * 112.85030 * 294.64619 * 14 13 12 16 16 N 1.46505 * 109.47203 * 311.61518 * 15 14 13 17 17 C 1.34775 * 120.00012 * 174.98372 * 16 15 14 18 18 O 1.21563 * 120.00126 * 359.97438 * 17 16 15 19 19 C 1.47757 * 119.99650 * 179.97438 * 17 16 15 20 20 C 1.39354 * 124.11462 * 180.02562 * 19 17 16 21 21 N 1.30084 * 112.14555 * 179.97438 * 20 19 17 22 22 S 1.55924 * 108.75586 * 359.97438 * 21 20 19 23 23 N 1.31483 * 124.11654 * 359.70238 * 19 17 16 24 24 C 1.53775 * 113.61372 * 163.45164 * 14 13 12 25 25 C 1.53961 * 87.01771 * 220.04724 * 24 14 13 26 26 C 1.53776 * 113.61354 * 65.84130 * 14 13 12 27 27 H 0.96993 * 120.00180 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00548 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47083 * 59.99839 * 12 10 9 30 30 H 1.08997 * 109.46635 * 299.99854 * 12 10 9 31 31 H 1.00896 * 110.99917 * 300.41246 * 13 12 10 32 32 H 1.09003 * 109.47189 * 71.60939 * 15 14 13 33 33 H 1.08996 * 109.47109 * 191.61110 * 15 14 13 34 34 H 0.97000 * 119.99412 * 354.97871 * 16 15 14 35 35 H 1.08002 * 123.92680 * 359.97438 * 20 19 17 36 36 H 1.09005 * 113.61386 * 334.56205 * 24 14 13 37 37 H 1.08995 * 113.62048 * 105.47007 * 24 14 13 38 38 H 1.08994 * 113.53660 * 270.80993 * 25 24 14 39 39 H 1.09002 * 113.66453 * 139.93276 * 25 24 14 40 40 H 1.09000 * 113.61794 * 254.52730 * 26 14 13 41 41 H 1.09005 * 113.61852 * 25.43655 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5608 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5164 -3.7957 -0.0831 15 6 8.0500 -3.2513 -1.4096 16 7 7.3122 -3.8599 -2.5194 17 6 7.5417 -3.4543 -3.7840 18 8 8.3607 -2.5833 -4.0038 19 6 6.7980 -4.0686 -4.9033 20 6 6.9671 -3.7161 -6.2409 21 7 6.1954 -4.4039 -7.0305 22 16 5.3485 -5.3903 -6.1697 23 7 5.9004 -5.0185 -4.7591 24 6 8.1194 -5.1539 0.3125 25 6 9.2307 -4.3622 1.0255 26 6 8.2210 -3.2092 1.1515 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3634 -0.0004 29 1 5.9241 -1.8560 0.8905 30 1 5.9240 -1.8576 -0.8894 31 1 5.7214 -4.2551 0.8142 32 1 7.9200 -2.1694 -1.4370 33 1 9.1089 -3.4925 -1.5017 34 1 6.6585 -4.5547 -2.3439 35 1 7.6585 -2.9599 -6.5822 36 1 7.4899 -5.7302 0.9907 37 1 8.4742 -5.7381 -0.5365 38 1 10.0804 -4.1303 0.3835 39 1 9.5269 -4.7899 1.9834 40 1 8.6579 -2.2256 0.9788 41 1 7.6195 -3.2528 2.0595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754978061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:11 Heat of formation + Delta-G solvation = -7.559777 kcal Electronic energy + Delta-G solvation = -27032.753171 eV Core-core repulsion = 23074.728097 eV Total energy + Delta-G solvation = -3958.025075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18269 -41.19003 -40.09758 -39.62259 -36.08440 -35.59768 -34.66762 -34.38672 -33.72267 -29.58240 -28.68794 -27.65712 -26.70574 -25.78687 -24.09656 -23.06300 -21.43006 -21.27168 -20.41604 -20.27068 -19.98409 -18.57851 -17.97314 -17.24126 -17.10800 -17.01440 -16.56572 -16.53553 -16.07269 -15.79267 -15.64008 -15.56332 -14.91735 -14.80548 -14.43328 -14.19471 -14.02007 -13.79102 -13.31485 -13.19199 -13.15285 -12.99968 -12.52501 -12.44685 -12.38440 -12.27182 -12.08996 -12.01800 -11.92680 -11.54994 -11.52702 -11.24631 -11.18581 -10.43852 -10.33295 -10.25556 -10.02490 -9.28256 -8.42840 -6.03032 -0.63814 0.36354 0.46578 0.61863 1.27447 1.32825 1.41123 1.94741 1.96407 2.05824 2.20438 2.69983 3.13583 3.30563 3.45538 3.54019 3.62682 3.71391 3.81194 3.95000 4.06638 4.13387 4.41126 4.43559 4.47060 4.49800 4.61105 4.66611 4.84970 4.89568 5.10405 5.13156 5.16815 5.28110 5.36036 5.47117 5.52254 5.89881 6.03565 6.37830 6.42771 6.58374 6.87082 6.99997 7.38723 7.95044 8.74764 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007828 B = 0.003936 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.869568 B = 7111.291727 C = 9369.163664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.326 4.326 8 H 0.057 0.943 9 N -0.594 5.594 10 C 0.450 3.550 11 O -0.608 6.608 12 C 0.067 3.933 13 N -0.664 5.664 14 C 0.076 3.924 15 C 0.148 3.852 16 N -0.688 5.688 17 C 0.601 3.399 18 O -0.554 6.554 19 C -0.007 4.007 20 C 0.088 3.912 21 N -0.597 5.597 22 S 0.779 5.221 23 N -0.565 5.565 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.162 4.162 27 H 0.279 0.721 28 H 0.387 0.613 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.353 0.647 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.418 0.582 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.609 -7.528 -5.580 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.211 4.211 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.455 4.455 8 H 0.075 0.925 9 N -0.235 5.235 10 C 0.238 3.762 11 O -0.492 6.492 12 C -0.066 4.066 13 N -0.297 5.297 14 C -0.015 4.015 15 C 0.024 3.976 16 N -0.338 5.338 17 C 0.382 3.618 18 O -0.433 6.433 19 C -0.180 4.180 20 C -0.104 4.104 21 N -0.438 5.438 22 S 0.821 5.179 23 N -0.416 5.416 24 C -0.163 4.163 25 C -0.165 4.165 26 C -0.202 4.202 27 H 0.088 0.912 28 H 0.222 0.778 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.173 0.827 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.256 0.744 35 H 0.245 0.755 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.041 -9.015 -6.977 23.930 hybrid contribution 0.552 2.160 1.411 2.639 sum 21.593 -6.855 -5.566 23.329 Atomic orbital electron populations 1.69792 1.08027 1.29168 1.50432 1.26044 0.96412 1.02479 0.96196 0.85440 0.79604 0.77188 0.79794 1.18573 1.19800 1.15518 1.18997 0.81445 0.94901 1.50177 0.92487 1.42064 1.05860 1.07612 1.68000 1.20954 0.90887 0.83300 0.81043 1.90546 1.71311 1.32541 1.54797 1.21487 0.89550 0.92330 1.03202 1.59789 1.08493 1.12398 1.48970 1.22689 0.85826 0.99068 0.93928 1.21275 0.95961 0.97670 0.82645 1.45667 1.42445 1.41004 1.04685 1.16868 0.81333 0.81573 0.82060 1.90793 1.35863 1.32107 1.84547 1.22459 1.00063 0.98648 0.96867 1.23939 0.99033 1.00391 0.87025 1.72210 1.15522 1.15978 1.40116 1.78904 1.30413 1.27853 0.80756 1.72349 1.15602 1.18461 1.35222 1.23128 0.97580 0.94763 1.00838 1.22775 0.96405 0.95827 1.01543 1.23604 0.99055 0.99994 0.97539 0.91171 0.77761 0.90498 0.88492 0.82689 0.91230 0.88888 0.74439 0.75465 0.89507 0.90655 0.88851 0.90097 0.90131 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.96 21.66 0.30 -56.13 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.96 39.32 27.74 68.60 1.90 41.22 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 8 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 9 N -0.59 -28.11 5.09 -306.97 -1.56 -29.67 16 10 C 0.45 20.06 7.83 87.66 0.69 20.75 16 11 O -0.61 -32.92 15.86 -3.09 -0.05 -32.97 16 12 C 0.07 1.99 5.80 85.56 0.50 2.48 16 13 N -0.66 -17.47 5.36 -471.57 -2.53 -20.00 16 14 C 0.08 1.41 0.77 4.05 0.00 1.41 16 15 C 0.15 2.93 4.49 86.38 0.39 3.31 16 16 N -0.69 -16.45 5.38 -466.05 -2.51 -18.96 16 17 C 0.60 15.78 7.82 86.76 0.68 16.46 16 18 O -0.55 -16.25 16.80 -3.91 -0.07 -16.31 16 19 C -0.01 -0.17 6.81 41.98 0.29 0.12 16 20 C 0.09 1.89 11.22 85.22 0.96 2.85 16 21 N -0.60 -12.71 11.41 -92.46 -1.05 -13.76 16 22 S 0.78 14.59 23.69 -56.49 -1.34 13.25 16 23 N -0.56 -13.86 11.00 -80.59 -0.89 -14.74 16 24 C -0.13 -1.89 7.36 31.18 0.23 -1.66 16 25 C -0.13 -1.49 7.74 31.18 0.24 -1.25 16 26 C -0.16 -2.35 6.61 31.12 0.21 -2.14 16 27 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 29 H 0.08 1.89 7.62 -2.39 -0.02 1.87 16 30 H 0.10 2.73 6.85 -2.39 -0.02 2.71 16 31 H 0.35 9.75 8.38 -89.70 -0.75 8.99 16 32 H 0.07 1.47 7.33 -2.39 -0.02 1.45 16 33 H 0.09 1.56 7.35 -2.39 -0.02 1.54 16 34 H 0.42 10.82 7.70 -92.71 -0.71 10.10 16 35 H 0.23 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.09 1.36 8.01 -2.38 -0.02 1.35 16 37 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.09 0.92 7.66 -2.39 -0.02 0.91 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 41 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -77.78 362.01 -3.23 -81.02 By element: Atomic # 1 Polarization: 44.15 SS G_CDS: -0.94 Total: 43.22 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 5.49 Total: 23.84 kcal Atomic # 7 Polarization: -145.02 SS G_CDS: -8.24 Total: -153.26 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.11 Total: -49.28 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.22 kcal Atomic # 16 Polarization: 14.59 SS G_CDS: -1.34 Total: 13.25 kcal Total: -77.78 -3.23 -81.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754978061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.458 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds