Wall clock time and date at job start Tue Mar 31 2020 22:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47127 * 270.00431 * 3 2 1 5 5 H 1.48510 * 109.47088 * 30.00234 * 3 2 1 6 6 H 1.48495 * 109.47073 * 150.00329 * 3 2 1 7 7 C 1.38948 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00584 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00677 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99275 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00415 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47004 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99790 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47056 * 179.97438 * 14 13 12 16 16 H 1.08993 * 112.90825 * 316.24939 * 15 14 13 17 17 C 1.53962 * 113.66529 * 87.55186 * 15 14 13 18 18 C 1.53782 * 87.11063 * 139.88900 * 17 15 14 19 19 H 1.09001 * 113.61250 * 220.08565 * 18 17 15 20 20 N 1.46501 * 113.61142 * 89.18830 * 18 17 15 21 21 C 1.34769 * 120.00014 * 107.50467 * 20 18 17 22 22 O 1.21607 * 120.00191 * 359.97438 * 21 20 18 23 23 C 1.47451 * 119.99956 * 179.97438 * 21 20 18 24 24 C 1.37986 * 124.15120 * 179.72555 * 23 21 20 25 25 S 1.72107 * 104.02953 * 179.90230 * 24 23 21 26 26 N 1.56408 * 96.15242 * 0.32144 * 25 24 23 27 27 N 1.27412 * 109.87740 * 359.80589 * 26 25 24 28 28 C 1.53781 * 87.08260 * 334.63747 * 18 17 15 29 29 H 0.97001 * 119.99861 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99710 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46889 * 60.00182 * 12 10 9 32 32 H 1.09000 * 109.46678 * 300.00037 * 12 10 9 33 33 H 1.00904 * 110.99814 * 56.04537 * 13 12 10 34 34 H 1.09002 * 109.47616 * 59.99626 * 14 13 12 35 35 H 1.09004 * 109.47026 * 299.99702 * 14 13 12 36 36 H 1.08997 * 113.53543 * 25.33574 * 17 15 14 37 37 H 1.08998 * 113.73879 * 254.47172 * 17 15 14 38 38 H 0.97001 * 119.99973 * 287.49325 * 20 18 17 39 39 H 1.07992 * 127.98602 * 359.97438 * 24 23 21 40 40 H 1.09002 * 113.61445 * 139.98212 * 28 18 17 41 41 H 1.09002 * 113.61408 * 270.79943 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0039 15 6 2.5231 -8.4068 -0.0050 16 1 3.3457 -8.2353 -0.6991 17 6 2.9819 -8.8266 1.4034 18 6 2.9305 -10.2796 0.9023 19 1 2.5288 -10.9800 1.6346 20 7 4.1863 -10.7385 0.3034 21 6 4.9648 -11.6194 0.9624 22 8 4.6251 -12.0330 2.0543 23 6 6.2284 -12.0817 0.3593 24 6 7.0916 -12.9756 0.9592 25 16 8.3718 -13.1468 -0.1783 26 7 7.7870 -12.1572 -1.2390 27 7 6.6784 -11.6845 -0.8256 28 6 1.8936 -9.8044 -0.1290 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3907 0.0002 31 1 0.6169 -4.9201 -0.8919 32 1 0.6175 -4.9213 0.8880 33 1 2.8334 -5.9128 0.7788 34 1 0.8735 -7.3447 -0.8941 35 1 0.8730 -7.3459 0.8859 36 1 2.2518 -8.6073 2.1824 37 1 3.9862 -8.4874 1.6571 38 1 4.4573 -10.4084 -0.5675 39 1 6.9874 -13.4574 1.9200 40 1 2.0195 -10.2541 -1.1139 41 1 0.8657 -9.8538 0.2305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755476378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:12 Heat of formation + Delta-G solvation = -4.919427 kcal Electronic energy + Delta-G solvation = -25225.835783 eV Core-core repulsion = 21267.925203 eV Total energy + Delta-G solvation = -3957.910580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22066 -41.04015 -40.14885 -39.39131 -36.55987 -35.78965 -34.35970 -33.27323 -33.10141 -29.86471 -28.24123 -27.31170 -26.64524 -25.70074 -24.67286 -22.87673 -22.00480 -21.13829 -20.50244 -20.18335 -19.86800 -17.97117 -17.74210 -17.27043 -17.11812 -17.00215 -16.56185 -16.42796 -16.11903 -15.78860 -15.70338 -15.39296 -15.11296 -14.94223 -14.36735 -14.16757 -13.71250 -13.69459 -13.50563 -13.34475 -13.11459 -13.04423 -12.84543 -12.59677 -12.42755 -12.12840 -11.89150 -11.52837 -11.51658 -11.45947 -11.28577 -11.20404 -11.08103 -10.93538 -10.34932 -10.16042 -10.02166 -9.28628 -8.47269 -5.96101 -0.96497 -0.06969 0.26930 0.51034 1.37577 1.41199 1.54069 1.92280 1.97401 2.04785 2.28923 2.70522 2.94017 3.19928 3.49352 3.53520 3.60976 3.75213 3.80153 3.89797 3.98073 4.32919 4.33520 4.45500 4.49980 4.56030 4.67787 4.77335 4.82524 4.86060 4.91170 5.07516 5.18092 5.22295 5.40225 5.58269 5.91075 6.14318 6.17985 6.43867 6.50067 6.59837 6.92003 7.12045 7.55696 8.11349 8.70073 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.001652 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.349420 B =16948.437513 C =17977.634322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.686 5.686 14 C 0.071 3.929 15 C -0.106 4.106 16 H 0.086 0.914 17 C -0.150 4.150 18 C 0.117 3.883 19 H 0.104 0.896 20 N -0.686 5.686 21 C 0.607 3.393 22 O -0.554 6.554 23 C -0.048 4.048 24 C -0.236 4.236 25 S 0.562 5.438 26 N -0.334 5.334 27 N -0.235 5.235 28 C -0.119 4.119 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -31.167 1.689 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.068 4.068 13 N -0.318 5.318 14 C -0.058 4.058 15 C -0.125 4.125 16 H 0.105 0.895 17 C -0.188 4.188 18 C 0.012 3.988 19 H 0.122 0.878 20 N -0.336 5.336 21 C 0.389 3.611 22 O -0.432 6.432 23 C -0.196 4.196 24 C -0.393 4.393 25 S 0.697 5.303 26 N -0.314 5.314 27 N -0.104 5.104 28 C -0.158 4.158 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.247 0.753 40 H 0.103 0.897 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.717 -31.144 0.245 32.626 hybrid contribution -1.373 1.430 1.571 2.529 sum 8.345 -29.714 1.817 30.917 Atomic orbital electron populations 1.69673 1.06781 1.29307 1.50259 1.26047 0.96583 1.02405 0.96253 0.84922 0.77856 0.76857 0.78654 1.19650 1.19400 1.19860 1.19665 0.92686 0.84110 1.50025 0.90450 1.41936 1.09342 1.04704 1.65043 1.20961 0.88275 0.86293 0.82134 1.90488 1.15995 1.88010 1.56701 1.21539 0.94051 0.88098 1.03063 1.60090 1.19194 1.01256 1.51230 1.22054 0.95432 0.86835 1.01443 1.22601 0.98574 0.93953 0.97354 0.89544 1.23581 1.02004 0.95604 0.97636 1.21954 0.83959 0.95613 0.97268 0.87840 1.45546 1.21734 1.43485 1.22786 1.16820 0.81541 0.78769 0.83944 1.90820 1.72853 1.58762 1.20756 1.22579 1.00708 1.02870 0.93437 1.29304 0.98949 1.01525 1.09478 1.81239 1.19143 1.31026 0.98852 1.78337 1.09402 1.16104 1.27594 1.71566 1.05670 1.20849 1.12292 1.23284 0.99186 0.93678 0.99604 0.91271 0.76920 0.87746 0.91595 0.84061 0.90083 0.93737 0.88132 0.92647 0.74701 0.75315 0.89670 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.95 13.05 21.66 0.28 -49.67 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.34 -19.38 9.68 84.04 0.81 -18.56 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.90 5.29 -306.99 -1.62 -31.52 16 10 C 0.44 21.19 7.82 87.66 0.69 21.88 16 11 O -0.63 -35.62 15.78 -3.06 -0.05 -35.67 16 12 C 0.06 2.24 6.17 85.56 0.53 2.77 16 13 N -0.69 -21.72 6.12 -517.94 -3.17 -24.90 16 14 C 0.07 1.53 5.52 86.30 0.48 2.01 16 15 C -0.11 -1.98 3.79 -10.20 -0.04 -2.02 16 16 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 17 C -0.15 -2.80 7.44 31.18 0.23 -2.57 16 18 C 0.12 1.96 4.32 45.52 0.20 2.16 16 19 H 0.10 1.83 7.47 -2.39 -0.02 1.81 16 20 N -0.69 -12.58 5.26 -443.28 -2.33 -14.91 16 21 C 0.61 12.75 7.81 86.67 0.68 13.43 16 22 O -0.55 -14.18 16.40 -4.05 -0.07 -14.25 16 23 C -0.05 -0.86 6.87 41.36 0.28 -0.57 16 24 C -0.24 -2.54 11.21 67.76 0.76 -1.78 16 25 S 0.56 4.35 23.38 -56.49 -1.32 3.03 16 26 N -0.33 -5.79 12.49 37.02 0.46 -5.33 16 27 N -0.23 -4.67 11.24 -50.34 -0.57 -5.24 16 28 C -0.12 -1.58 7.38 31.12 0.23 -1.35 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.40 19.54 7.90 -92.70 -0.73 18.81 16 31 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.34 11.62 8.43 -89.69 -0.76 10.86 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 0.85 7.85 -2.38 -0.02 0.83 16 36 H 0.10 1.70 7.90 -2.39 -0.02 1.68 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.42 7.15 8.29 -92.71 -0.77 6.38 16 39 H 0.23 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -76.38 371.70 -2.19 -78.56 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -1.14 Total: 39.27 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.31 Total: 15.15 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -6.95 Total: -131.57 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.92 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.32 Total: 3.03 kcal Total: -76.38 -2.19 -78.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755476378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.643 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds