Wall clock time and date at job start Tue Mar 31 2020 23:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09000 * 110.72027 * 336.75413 * 4 2 1 6 6 N 1.46905 * 110.72105 * 100.02595 * 4 2 1 7 7 C 1.46897 * 111.00297 * 205.00185 * 6 4 2 8 8 C 1.50695 * 109.47402 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99844 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00172 * 180.02562 * 8 7 6 11 11 C 1.37103 * 120.00070 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99726 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99930 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99974 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46656 * 90.00601 * 15 13 11 17 17 H 1.48496 * 109.47069 * 210.00207 * 15 13 11 18 18 H 1.48496 * 109.47141 * 330.00170 * 15 13 11 19 19 C 1.55152 * 102.94666 * 218.39170 * 4 2 1 20 20 C 1.54906 * 101.58126 * 35.49838 * 19 4 2 21 21 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 22 22 C 1.34784 * 125.64509 * 298.31398 * 21 2 1 23 23 O 1.21616 * 119.99976 * 359.97438 * 22 21 2 24 24 C 1.47169 * 119.99756 * 179.97438 * 22 21 2 25 25 C 1.38243 * 128.47609 * 179.69779 * 24 22 21 26 26 N 1.31237 * 111.88805 * 179.84858 * 25 24 22 27 27 N 1.27339 * 120.04009 * 0.49123 * 26 25 24 28 28 S 1.56631 * 109.73758 * 359.71975 * 27 26 25 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 1.00895 * 110.99758 * 328.95893 * 6 4 2 33 33 H 1.09003 * 109.47100 * 300.00265 * 7 6 4 34 34 H 1.09003 * 109.46916 * 59.99863 * 7 6 4 35 35 H 0.97003 * 120.00142 * 0.02562 * 10 8 7 36 36 H 0.97002 * 120.00026 * 179.97438 * 14 13 11 37 37 H 1.08996 * 111.00932 * 153.57596 * 19 4 2 38 38 H 1.09008 * 111.00659 * 277.39010 * 19 4 2 39 39 H 1.09004 * 110.36734 * 81.83346 * 20 19 4 40 40 H 1.09006 * 110.37118 * 204.15576 * 20 19 4 41 41 H 1.07999 * 124.05408 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3052 -1.4437 -1.6202 6 7 2.4566 0.2019 -2.2900 7 6 2.3873 -0.4192 -3.6195 8 6 2.8049 0.5830 -4.6645 9 8 3.1281 1.7045 -4.3344 10 7 2.8184 0.2335 -5.9661 11 6 3.1978 1.1454 -6.9169 12 1 3.4864 2.1438 -6.6228 13 6 3.2122 0.7849 -8.2587 14 7 2.8617 -0.4301 -8.6164 15 14 3.7299 2.0272 -9.5541 16 1 5.1963 1.9352 -9.7700 17 1 3.0230 1.7381 -10.8276 18 1 3.3821 3.3957 -9.0945 19 6 3.2876 -1.5133 -0.6944 20 6 2.8145 -1.8804 0.7342 21 7 2.0300 -0.7157 1.1829 22 6 1.8086 -0.3646 2.4652 23 8 1.1443 0.6218 2.7196 24 6 2.3708 -1.1749 3.5576 25 6 2.2602 -0.9757 4.9211 26 7 2.8901 -1.9028 5.6037 27 7 3.5115 -2.8320 4.9938 28 16 3.3623 -2.6409 3.4463 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 1.8957 1.0397 -2.2526 33 1 3.0551 -1.2800 -3.6536 34 1 1.3655 -0.7440 -3.8159 35 1 2.5589 -0.6631 -6.2302 36 1 2.8713 -0.6817 -9.5532 37 1 3.4852 -2.4092 -1.2829 38 1 4.1657 -0.8681 -0.6621 39 1 2.1886 -2.7725 0.7090 40 1 3.6716 -2.0357 1.3895 41 1 1.7179 -0.1570 5.3707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755662572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:06 Heat of formation + Delta-G solvation = 18.108369 kcal Electronic energy + Delta-G solvation = -26280.896179 eV Core-core repulsion = 22323.984159 eV Total energy + Delta-G solvation = -3956.912020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25852 -40.61475 -38.56441 -37.85987 -34.97216 -33.88736 -32.80119 -31.62224 -31.32521 -30.85861 -27.94045 -27.04689 -25.27729 -24.19053 -23.77359 -22.40667 -20.78958 -20.14220 -19.50135 -19.09358 -17.94789 -17.46789 -17.11654 -16.34262 -16.22876 -15.85470 -15.41943 -15.16819 -14.88297 -14.54849 -14.20135 -13.99790 -13.90840 -13.63081 -13.39810 -13.15394 -13.02343 -12.63256 -12.56896 -12.29018 -12.02477 -11.89066 -11.70561 -11.54602 -11.30448 -11.07234 -10.94427 -10.57754 -10.49930 -10.43234 -10.42135 -10.26627 -10.24572 -9.56138 -9.16944 -8.56869 -8.24158 -8.02044 -6.46942 -3.87874 -0.71719 0.33881 1.03497 1.54273 2.27910 2.53755 3.14476 3.23727 3.29329 3.53982 3.83222 3.84851 3.95550 4.16151 4.21308 4.24759 4.32632 4.71125 4.78264 4.94386 4.98457 5.07875 5.12759 5.16023 5.20417 5.24534 5.39073 5.62073 5.68104 5.75612 5.85054 5.86431 5.95834 5.99111 6.19630 6.88973 7.04106 7.20681 7.45029 7.50554 7.53683 8.00565 8.55029 9.12599 9.48091 9.99057 10.70604 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.001962 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.528651 B =14268.020865 C =14684.317792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 H 0.095 0.905 4 C 0.078 3.922 5 H 0.067 0.933 6 N -0.655 5.655 7 C 0.051 3.949 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.120 4.120 20 C 0.086 3.914 21 N -0.602 5.602 22 C 0.616 3.384 23 O -0.513 6.513 24 C -0.284 4.284 25 C 0.073 3.927 26 N -0.252 5.252 27 N -0.271 5.271 28 S 0.433 5.567 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.354 0.646 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -8.975 20.615 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.113 0.887 4 C -0.033 4.033 5 H 0.085 0.915 6 N -0.289 5.289 7 C -0.081 4.081 8 C 0.224 3.776 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.159 4.159 20 C -0.039 4.039 21 N -0.336 5.336 22 C 0.401 3.599 23 O -0.389 6.389 24 C -0.425 4.425 25 C -0.094 4.094 26 N -0.116 5.116 27 N -0.252 5.252 28 S 0.569 5.431 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.237 -9.463 21.334 23.371 hybrid contribution -1.618 1.057 -1.010 2.181 sum -2.855 -8.406 20.324 22.179 Atomic orbital electron populations 1.22196 0.94056 1.02545 1.03625 1.21797 0.94641 0.97279 0.82983 0.88731 1.22645 0.95665 0.94196 0.90812 0.91488 1.60164 1.60147 1.06885 1.01695 1.21735 1.00107 0.97657 0.88649 1.19755 0.85328 0.89110 0.83368 1.90539 1.53387 1.21948 1.80817 1.41859 1.58792 1.14680 1.04551 1.19703 1.41611 0.95760 0.85854 0.87888 1.25268 0.97393 0.97026 0.98237 1.69607 1.48090 1.18176 1.18363 0.85853 0.78595 0.80401 0.79427 1.20361 1.20929 1.19404 1.22882 0.99239 1.01393 0.92359 1.22722 0.94979 0.88998 0.97183 1.48279 1.52087 1.28668 1.04575 1.16027 0.80354 0.83533 0.79953 1.90863 1.39369 1.26063 1.82644 1.27995 1.10960 1.04551 0.99005 1.24494 0.97625 0.98808 0.88443 1.70807 1.08523 1.00314 1.31938 1.78745 1.19866 1.20343 1.06222 1.82902 1.33945 1.15057 1.11212 0.92331 0.91027 0.90824 0.82517 0.89405 0.93569 0.77455 0.91835 0.89166 0.88712 0.89959 0.90739 0.76760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.10 37.16 0.34 -1.23 16 2 C 0.14 1.36 2.97 -66.96 -0.20 1.16 16 3 H 0.09 1.11 7.89 -51.93 -0.41 0.70 16 4 C 0.08 0.76 2.81 -65.88 -0.18 0.58 16 5 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 6 N -0.66 -9.03 5.97 -106.06 -0.63 -9.66 16 7 C 0.05 0.79 6.03 -4.98 -0.03 0.76 16 8 C 0.44 9.70 7.82 -10.99 -0.09 9.62 16 9 O -0.58 -15.10 15.78 5.54 0.09 -15.01 16 10 N -0.56 -13.57 5.29 -10.96 -0.06 -13.63 16 11 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 12 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -23.79 13.05 55.50 0.72 -23.06 16 15 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 C -0.12 -0.96 6.77 -24.59 -0.17 -1.13 16 20 C 0.09 0.56 5.75 -2.53 -0.01 0.55 16 21 N -0.60 -5.54 3.06 -164.37 -0.50 -6.04 16 22 C 0.62 6.47 7.63 -12.63 -0.10 6.38 16 23 O -0.51 -6.90 16.03 5.26 0.08 -6.82 16 24 C -0.28 -2.46 6.66 -35.96 -0.24 -2.70 16 25 C 0.07 0.63 11.55 -17.80 -0.21 0.42 16 26 N -0.25 -2.55 11.54 30.36 0.35 -2.20 16 27 N -0.27 -2.64 12.51 60.35 0.75 -1.89 16 28 S 0.43 2.95 19.60 -107.50 -2.11 0.84 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 32 H 0.35 5.18 8.01 -39.29 -0.31 4.87 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.40 5.16 -33.86 -0.17 0.23 16 41 H 0.22 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -32.95 359.84 -6.89 -39.84 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.86 Total: 10.03 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.12 Total: 6.65 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.63 Total: -56.48 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.11 Total: 0.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.95 -6.89 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755662572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.948 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds