Wall clock time and date at job start Tue Mar 31 2020 23:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09000 * 110.72027 * 336.75413 * 4 2 1 6 6 N 1.46905 * 110.72105 * 100.02595 * 4 2 1 7 7 C 1.46897 * 111.00297 * 205.00185 * 6 4 2 8 8 C 1.50695 * 109.47402 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99844 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00172 * 180.02562 * 8 7 6 11 11 C 1.37103 * 120.00070 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99726 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99930 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99974 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46656 * 90.00601 * 15 13 11 17 17 H 1.48496 * 109.47069 * 210.00207 * 15 13 11 18 18 H 1.48496 * 109.47141 * 330.00170 * 15 13 11 19 19 C 1.55152 * 102.94666 * 218.39170 * 4 2 1 20 20 C 1.54906 * 101.58126 * 35.49838 * 19 4 2 21 21 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 22 22 C 1.34784 * 125.64509 * 298.31398 * 21 2 1 23 23 O 1.21616 * 119.99976 * 359.97438 * 22 21 2 24 24 C 1.47169 * 119.99756 * 179.97438 * 22 21 2 25 25 C 1.38243 * 128.47609 * 179.69779 * 24 22 21 26 26 N 1.31237 * 111.88805 * 179.84858 * 25 24 22 27 27 N 1.27339 * 120.04009 * 0.49123 * 26 25 24 28 28 S 1.56631 * 109.73758 * 359.71975 * 27 26 25 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 1.00895 * 110.99758 * 328.95893 * 6 4 2 33 33 H 1.09003 * 109.47100 * 300.00265 * 7 6 4 34 34 H 1.09003 * 109.46916 * 59.99863 * 7 6 4 35 35 H 0.97003 * 120.00142 * 0.02562 * 10 8 7 36 36 H 0.97002 * 120.00026 * 179.97438 * 14 13 11 37 37 H 1.08996 * 111.00932 * 153.57596 * 19 4 2 38 38 H 1.09008 * 111.00659 * 277.39010 * 19 4 2 39 39 H 1.09004 * 110.36734 * 81.83346 * 20 19 4 40 40 H 1.09006 * 110.37118 * 204.15576 * 20 19 4 41 41 H 1.07999 * 124.05408 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3052 -1.4437 -1.6202 6 7 2.4566 0.2019 -2.2900 7 6 2.3873 -0.4192 -3.6195 8 6 2.8049 0.5830 -4.6645 9 8 3.1281 1.7045 -4.3344 10 7 2.8184 0.2335 -5.9661 11 6 3.1978 1.1454 -6.9169 12 1 3.4864 2.1438 -6.6228 13 6 3.2122 0.7849 -8.2587 14 7 2.8617 -0.4301 -8.6164 15 14 3.7299 2.0272 -9.5541 16 1 5.1963 1.9352 -9.7700 17 1 3.0230 1.7381 -10.8276 18 1 3.3821 3.3957 -9.0945 19 6 3.2876 -1.5133 -0.6944 20 6 2.8145 -1.8804 0.7342 21 7 2.0300 -0.7157 1.1829 22 6 1.8086 -0.3646 2.4652 23 8 1.1443 0.6218 2.7196 24 6 2.3708 -1.1749 3.5576 25 6 2.2602 -0.9757 4.9211 26 7 2.8901 -1.9028 5.6037 27 7 3.5115 -2.8320 4.9938 28 16 3.3623 -2.6409 3.4463 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 1.8957 1.0397 -2.2526 33 1 3.0551 -1.2800 -3.6536 34 1 1.3655 -0.7440 -3.8159 35 1 2.5589 -0.6631 -6.2302 36 1 2.8713 -0.6817 -9.5532 37 1 3.4852 -2.4092 -1.2829 38 1 4.1657 -0.8681 -0.6621 39 1 2.1886 -2.7725 0.7090 40 1 3.6716 -2.0357 1.3895 41 1 1.7179 -0.1570 5.3707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755662572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:05 Heat of formation + Delta-G solvation = -8.050302 kcal Electronic energy + Delta-G solvation = -26282.030504 eV Core-core repulsion = 22323.984159 eV Total energy + Delta-G solvation = -3958.046345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94812 -41.37398 -40.10818 -38.92757 -36.23023 -35.59985 -33.56485 -33.21971 -32.31622 -31.77169 -28.79562 -28.20539 -26.55484 -25.29803 -24.69402 -23.15716 -21.57253 -21.12116 -20.74023 -20.02645 -19.78508 -18.24959 -17.89993 -17.64910 -17.05875 -16.83633 -16.61589 -16.34506 -15.96334 -15.81793 -15.50890 -15.30506 -14.83276 -14.48700 -14.38601 -14.23710 -13.94562 -13.73153 -13.48684 -13.36294 -13.10721 -13.04038 -12.84005 -12.80034 -12.50501 -12.39328 -12.12358 -12.06070 -11.70868 -11.48393 -11.36142 -11.19792 -11.08572 -10.87525 -10.31018 -9.98462 -9.90887 -9.35127 -8.44744 -5.92635 -1.38249 -0.27855 0.40549 0.85483 1.39312 1.43602 1.53680 1.56012 1.78254 2.09466 2.30818 2.88095 2.92458 3.18562 3.23401 3.50625 3.51364 3.59355 3.64446 4.01889 4.18532 4.21903 4.32367 4.37325 4.47927 4.50390 4.54429 4.56517 4.65243 4.73336 4.96192 5.03320 5.15025 5.21754 5.27397 5.43674 5.91551 6.12202 6.16444 6.34169 6.56016 6.63256 6.76129 7.15892 7.60303 8.15997 8.72379 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.001962 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.528651 B =14268.020865 C =14684.317792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.069 0.931 4 C 0.081 3.919 5 H 0.090 0.910 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.626 6.626 10 N -0.573 5.573 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.918 5.918 15 Si 0.989 3.011 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.117 4.117 20 C 0.084 3.916 21 N -0.601 5.601 22 C 0.615 3.385 23 O -0.552 6.552 24 C -0.303 4.303 25 C 0.075 3.925 26 N -0.277 5.277 27 N -0.304 5.304 28 S 0.518 5.482 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.345 0.655 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.277 0.723 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -11.229 20.374 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.087 0.913 4 C -0.029 4.029 5 H 0.108 0.892 6 N -0.304 5.304 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.559 5.559 15 Si 0.813 3.187 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.200 1.200 19 C -0.156 4.156 20 C -0.040 4.040 21 N -0.334 5.334 22 C 0.402 3.598 23 O -0.431 6.431 24 C -0.444 4.444 25 C -0.093 4.093 26 N -0.140 5.140 27 N -0.285 5.285 28 S 0.654 5.346 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.138 -11.781 21.106 24.198 hybrid contribution -1.610 1.742 -0.932 2.548 sum -2.748 -10.039 20.174 22.701 Atomic orbital electron populations 1.22123 0.93570 1.03228 1.02813 1.21678 0.94981 0.96310 0.83701 0.91313 1.22717 0.97203 0.93626 0.89324 0.89199 1.60164 1.60906 1.07559 1.01784 1.21595 1.01844 0.95854 0.87148 1.20969 0.83109 0.89693 0.83799 1.90512 1.54740 1.24413 1.81572 1.41923 1.59527 1.14509 1.05102 1.19625 1.43561 0.95628 0.87337 0.90508 1.25976 0.96997 0.98774 0.99461 1.69657 1.48164 1.19086 1.19037 0.84979 0.78474 0.77942 0.77270 1.19741 1.19630 1.19954 1.22895 0.97608 1.01742 0.93356 1.22972 0.95666 0.88925 0.96417 1.48327 1.51874 1.29206 1.03987 1.16214 0.79915 0.83190 0.80524 1.90841 1.41210 1.27805 1.83290 1.27871 1.12173 1.05862 0.98528 1.24729 0.97171 0.98765 0.88602 1.70862 1.09481 1.00892 1.32738 1.78508 1.20689 1.20942 1.08326 1.82469 1.31114 1.12335 1.08685 0.90752 0.90870 0.92677 0.83503 0.86910 0.90943 0.76833 0.91348 0.86686 0.90515 0.86789 0.89546 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.10 71.98 0.65 -2.19 16 2 C 0.14 2.60 2.97 45.34 0.13 2.73 16 3 H 0.07 1.67 7.89 -2.38 -0.02 1.65 16 4 C 0.08 1.38 2.81 46.10 0.13 1.51 16 5 H 0.09 1.19 7.54 -2.39 -0.02 1.18 16 6 N -0.67 -17.55 5.97 -489.46 -2.92 -20.47 16 7 C 0.07 1.94 6.03 85.56 0.52 2.45 16 8 C 0.44 19.25 7.82 87.66 0.69 19.94 16 9 O -0.63 -33.15 15.78 -3.08 -0.05 -33.20 16 10 N -0.57 -27.77 5.29 -306.99 -1.62 -29.39 16 11 C -0.33 -18.25 9.68 84.04 0.81 -17.43 16 12 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 13 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 14 N -0.92 -47.88 13.05 21.66 0.28 -47.60 16 15 Si 0.99 41.96 29.55 68.60 2.03 43.99 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 C -0.12 -1.50 6.77 31.98 0.22 -1.28 16 20 C 0.08 0.81 5.75 86.86 0.50 1.31 16 21 N -0.60 -10.03 3.06 -792.20 -2.43 -12.46 16 22 C 0.61 12.45 7.63 86.59 0.66 13.11 16 23 O -0.55 -15.13 16.03 -4.08 -0.07 -15.19 16 24 C -0.30 -4.85 6.66 24.62 0.16 -4.69 16 25 C 0.08 1.24 11.55 84.78 0.98 2.22 16 26 N -0.28 -5.39 11.54 -57.87 -0.67 -6.06 16 27 N -0.30 -5.45 12.51 37.02 0.46 -4.99 16 28 S 0.52 5.70 19.60 -56.49 -1.11 4.59 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.20 6.91 -2.38 -0.02 1.19 16 32 H 0.35 10.07 8.01 -89.70 -0.72 9.35 16 33 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.40 18.05 7.90 -92.71 -0.73 17.32 16 36 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.09 0.61 5.16 -13.87 -0.07 0.54 16 41 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -73.69 359.84 -0.57 -74.27 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.41 Total: 29.01 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.92 Total: 17.51 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -6.89 Total: -120.97 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.11 Total: -48.39 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.11 Total: 4.59 kcal Total: -73.69 -0.57 -74.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755662572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.216 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds