Wall clock time and date at job start Tue Mar 31 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.99335 * 2 1 4 4 C 1.54325 * 109.88389 * 121.09292 * 2 1 3 5 5 H 1.09001 * 110.86956 * 23.17591 * 4 2 1 6 6 N 1.46903 * 110.72226 * 259.97797 * 4 2 1 7 7 C 1.46896 * 110.99955 * 160.02417 * 6 4 2 8 8 C 1.50701 * 109.46946 * 180.02562 * 7 6 4 9 9 O 1.21293 * 120.00278 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00078 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99959 * 179.97438 * 10 8 7 12 12 H 1.07991 * 120.00408 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99816 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99922 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00126 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46986 * 270.00039 * 15 13 11 17 17 H 1.48496 * 109.47029 * 30.00056 * 15 13 11 18 18 H 1.48499 * 109.47352 * 149.99886 * 15 13 11 19 19 C 1.55154 * 102.94022 * 141.61265 * 4 2 1 20 20 C 1.54906 * 101.58209 * 324.49964 * 19 4 2 21 21 N 1.47015 * 109.88490 * 238.90473 * 2 1 3 22 22 C 1.34776 * 125.65030 * 61.59484 * 21 2 1 23 23 O 1.21625 * 119.99695 * 0.02848 * 22 21 2 24 24 C 1.47169 * 120.00508 * 180.02562 * 22 21 2 25 25 C 1.38247 * 128.47860 * 179.69946 * 24 22 21 26 26 N 1.31245 * 111.88592 * 179.84800 * 25 24 22 27 27 N 1.27335 * 120.03699 * 0.49639 * 26 25 24 28 28 S 1.56634 * 109.74403 * 359.70906 * 27 26 25 29 29 H 1.09005 * 109.47603 * 298.90181 * 1 2 3 30 30 H 1.08994 * 109.47288 * 58.90680 * 1 2 3 31 31 H 1.09003 * 109.47053 * 178.90682 * 1 2 3 32 32 H 1.00902 * 110.99560 * 36.06855 * 6 4 2 33 33 H 1.08994 * 109.47346 * 60.00149 * 7 6 4 34 34 H 1.09006 * 109.47133 * 299.99542 * 7 6 4 35 35 H 0.97000 * 119.99555 * 359.97438 * 10 8 7 36 36 H 0.96996 * 120.00340 * 359.97438 * 14 13 11 37 37 H 1.08999 * 111.00246 * 82.57727 * 19 4 2 38 38 H 1.09005 * 111.00219 * 206.38751 * 19 4 2 39 39 H 1.09000 * 110.36397 * 155.85320 * 20 19 4 40 40 H 1.09003 * 110.36605 * 278.05649 * 20 19 4 41 41 H 1.07998 * 124.05634 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3064 -1.4457 1.6211 6 7 2.4565 0.1987 2.2904 7 6 2.5019 -0.4567 3.6043 8 6 2.9161 0.5451 4.6512 9 8 3.1508 1.6920 4.3340 10 7 3.0267 0.1663 5.9400 11 6 3.4040 1.0775 6.8923 12 1 3.6130 2.0986 6.6099 13 6 3.5175 0.6870 8.2210 14 7 3.2627 -0.5555 8.5648 15 14 4.0323 1.9283 9.5185 16 1 5.5115 1.9230 9.6494 17 1 3.5758 3.2829 9.1163 18 1 3.4188 1.5659 10.8214 19 6 3.2876 -1.5141 0.6924 20 6 2.8145 -1.8793 -0.7367 21 7 2.0300 -0.7140 -1.1838 22 6 1.8073 -0.3621 -2.4656 23 8 1.1414 0.6237 -2.7187 24 6 2.3697 -1.1707 -3.5592 25 6 2.2484 -0.9768 -4.9226 26 7 2.8876 -1.8968 -5.6063 27 7 3.5101 -2.8260 -4.9976 28 16 3.3622 -2.6362 -3.4499 29 1 -0.3634 0.4967 0.8997 30 1 -0.3633 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 1.8436 1.0001 2.3070 33 1 3.2225 -1.2740 3.5779 34 1 1.5151 -0.8499 3.8485 35 1 2.8394 -0.7511 6.1936 36 1 2.9951 -1.2000 7.8911 37 1 4.1654 -0.8687 0.6605 38 1 3.4856 -2.4106 1.2801 39 1 3.6717 -2.0337 -1.3921 40 1 2.1903 -2.7726 -0.7130 41 1 1.6964 -0.1641 -5.3712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755662573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:09 Heat of formation + Delta-G solvation = 19.007515 kcal Electronic energy + Delta-G solvation = -26325.433556 eV Core-core repulsion = 22368.560526 eV Total energy + Delta-G solvation = -3956.873030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28359 -40.65334 -38.67446 -37.95682 -35.11687 -34.19641 -32.84146 -31.66636 -31.25332 -30.83213 -27.96073 -27.03238 -25.19562 -24.16684 -23.77960 -22.44803 -20.81581 -20.19055 -19.78823 -19.22744 -17.97246 -17.51946 -17.16973 -16.58024 -16.37034 -15.92024 -15.49915 -15.22727 -15.00309 -14.58506 -14.18488 -14.12340 -13.84819 -13.72307 -13.45912 -13.26759 -13.05335 -12.81714 -12.61655 -12.34935 -12.07408 -11.98413 -11.76457 -11.36719 -11.25520 -10.99658 -10.96130 -10.59736 -10.52719 -10.44500 -10.27912 -10.25236 -9.92183 -9.60336 -9.20445 -8.64217 -8.32028 -8.09064 -6.80618 -3.94238 -0.74146 0.31388 1.01006 1.51906 2.24209 2.50863 3.27095 3.32306 3.51248 3.51360 3.76847 3.80185 3.89920 4.11620 4.22054 4.26146 4.28583 4.66773 4.71626 4.83843 4.94228 4.99146 5.10046 5.10865 5.18229 5.20274 5.33407 5.51504 5.60052 5.69908 5.74612 5.80221 5.87433 5.94442 5.97990 6.85233 6.93879 7.18358 7.36808 7.50506 7.75188 8.02829 8.53715 8.73580 9.41337 9.80533 10.62756 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.001978 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.124488 B =14154.975965 C =14602.988570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 H 0.096 0.904 4 C 0.078 3.922 5 H 0.065 0.935 6 N -0.655 5.655 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.576 6.576 10 N -0.574 5.574 11 C -0.382 4.382 12 H 0.100 0.900 13 C -0.009 4.009 14 N -0.901 5.901 15 Si 1.093 2.907 16 H -0.284 1.284 17 H -0.283 1.283 18 H -0.281 1.281 19 C -0.121 4.121 20 C 0.087 3.913 21 N -0.602 5.602 22 C 0.616 3.384 23 O -0.513 6.513 24 C -0.284 4.284 25 C 0.074 3.926 26 N -0.251 5.251 27 N -0.271 5.271 28 S 0.432 5.568 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.354 0.646 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.375 0.625 36 H 0.261 0.739 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 -8.476 -21.106 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.114 0.886 4 C -0.033 4.033 5 H 0.083 0.917 6 N -0.289 5.289 7 C -0.081 4.081 8 C 0.227 3.773 9 O -0.459 6.459 10 N -0.212 5.212 11 C -0.511 4.511 12 H 0.118 0.882 13 C -0.212 4.212 14 N -0.540 5.540 15 Si 0.919 3.081 16 H -0.211 1.211 17 H -0.209 1.209 18 H -0.206 1.206 19 C -0.159 4.159 20 C -0.038 4.038 21 N -0.336 5.336 22 C 0.402 3.598 23 O -0.389 6.389 24 C -0.425 4.425 25 C -0.093 4.093 26 N -0.115 5.115 27 N -0.251 5.251 28 S 0.568 5.432 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.175 0.825 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.208 0.792 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.594 -8.602 -20.413 22.209 hybrid contribution -2.116 0.212 -1.384 2.537 sum -3.710 -8.390 -21.797 23.648 Atomic orbital electron populations 1.22193 0.94036 1.02535 1.03648 1.21734 0.94596 0.97325 0.82821 0.88639 1.22634 0.95702 0.94035 0.90959 0.91723 1.60139 1.57468 1.08516 1.02782 1.21717 1.00358 0.97127 0.88922 1.19678 0.85235 0.89300 0.83072 1.90545 1.54781 1.20050 1.80547 1.41935 1.60988 1.11934 1.06391 1.20568 1.46548 0.94873 0.89151 0.88241 1.26521 0.96455 1.00352 0.97845 1.70881 1.43532 1.02925 1.36636 0.83093 0.76713 0.73627 0.74639 1.21058 1.20909 1.20642 1.22881 0.99200 1.01354 0.92514 1.22701 0.95019 0.89017 0.97095 1.48269 1.52102 1.28660 1.04600 1.16024 0.80346 0.83533 0.79932 1.90867 1.39291 1.26061 1.82669 1.27988 1.10900 1.04652 0.98999 1.24500 0.97559 0.98854 0.88411 1.70810 1.08356 1.00453 1.31927 1.78748 1.19959 1.20189 1.06210 1.82899 1.34109 1.14954 1.11232 0.91053 0.90763 0.92344 0.82464 0.89449 0.93645 0.79153 0.92746 0.88678 0.89201 0.90699 0.89943 0.76742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.10 37.16 0.34 -1.21 16 2 C 0.14 1.38 2.98 -66.96 -0.20 1.18 16 3 H 0.10 1.13 7.97 -51.93 -0.41 0.72 16 4 C 0.08 0.76 2.77 -65.88 -0.18 0.57 16 5 H 0.06 0.56 7.61 -51.93 -0.40 0.17 16 6 N -0.66 -8.98 5.93 -106.06 -0.63 -9.61 16 7 C 0.05 0.78 6.02 -4.98 -0.03 0.75 16 8 C 0.44 9.77 7.82 -10.98 -0.09 9.69 16 9 O -0.58 -15.05 15.78 5.55 0.09 -14.96 16 10 N -0.57 -13.77 5.28 -10.97 -0.06 -13.83 16 11 C -0.38 -10.43 9.68 -14.93 -0.14 -10.57 16 12 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 13 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 14 N -0.90 -24.53 13.68 55.50 0.76 -23.77 16 15 Si 1.09 23.76 29.92 -169.99 -5.09 18.67 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 19 C -0.12 -0.96 6.71 -24.59 -0.17 -1.12 16 20 C 0.09 0.56 5.75 -2.53 -0.01 0.55 16 21 N -0.60 -5.51 3.06 -164.38 -0.50 -6.01 16 22 C 0.62 6.44 7.63 -12.63 -0.10 6.34 16 23 O -0.51 -6.86 16.03 5.26 0.08 -6.78 16 24 C -0.28 -2.45 6.66 -35.95 -0.24 -2.69 16 25 C 0.07 0.63 11.55 -17.80 -0.21 0.42 16 26 N -0.25 -2.53 11.54 30.36 0.35 -2.18 16 27 N -0.27 -2.62 12.51 60.35 0.75 -1.87 16 28 S 0.43 2.92 19.60 -107.50 -2.11 0.81 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.35 5.17 8.15 -39.29 -0.32 4.85 16 33 H 0.09 1.19 8.13 -51.93 -0.42 0.76 16 34 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.38 8.23 6.73 -40.82 -0.27 7.96 16 36 H 0.26 6.79 6.78 -40.82 -0.28 6.51 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.40 5.16 -33.87 -0.17 0.22 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.22 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -34.33 358.27 -6.83 -41.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.76 Total: 9.40 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.12 Total: 3.56 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.67 Total: -57.27 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.17 Total: -21.74 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.09 Total: 18.67 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.11 Total: 0.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.33 -6.83 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755662573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.166 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds