Wall clock time and date at job start Tue Mar 31 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.99335 * 2 1 4 4 C 1.54325 * 109.88389 * 121.09292 * 2 1 3 5 5 H 1.09001 * 110.86956 * 23.17591 * 4 2 1 6 6 N 1.46903 * 110.72226 * 259.97797 * 4 2 1 7 7 C 1.46896 * 110.99955 * 160.02417 * 6 4 2 8 8 C 1.50701 * 109.46946 * 180.02562 * 7 6 4 9 9 O 1.21293 * 120.00278 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00078 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99959 * 179.97438 * 10 8 7 12 12 H 1.07991 * 120.00408 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99816 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99922 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00126 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46986 * 270.00039 * 15 13 11 17 17 H 1.48496 * 109.47029 * 30.00056 * 15 13 11 18 18 H 1.48499 * 109.47352 * 149.99886 * 15 13 11 19 19 C 1.55154 * 102.94022 * 141.61265 * 4 2 1 20 20 C 1.54906 * 101.58209 * 324.49964 * 19 4 2 21 21 N 1.47015 * 109.88490 * 238.90473 * 2 1 3 22 22 C 1.34776 * 125.65030 * 61.59484 * 21 2 1 23 23 O 1.21625 * 119.99695 * 0.02848 * 22 21 2 24 24 C 1.47169 * 120.00508 * 180.02562 * 22 21 2 25 25 C 1.38247 * 128.47860 * 179.69946 * 24 22 21 26 26 N 1.31245 * 111.88592 * 179.84800 * 25 24 22 27 27 N 1.27335 * 120.03699 * 0.49639 * 26 25 24 28 28 S 1.56634 * 109.74403 * 359.70906 * 27 26 25 29 29 H 1.09005 * 109.47603 * 298.90181 * 1 2 3 30 30 H 1.08994 * 109.47288 * 58.90680 * 1 2 3 31 31 H 1.09003 * 109.47053 * 178.90682 * 1 2 3 32 32 H 1.00902 * 110.99560 * 36.06855 * 6 4 2 33 33 H 1.08994 * 109.47346 * 60.00149 * 7 6 4 34 34 H 1.09006 * 109.47133 * 299.99542 * 7 6 4 35 35 H 0.97000 * 119.99555 * 359.97438 * 10 8 7 36 36 H 0.96996 * 120.00340 * 359.97438 * 14 13 11 37 37 H 1.08999 * 111.00246 * 82.57727 * 19 4 2 38 38 H 1.09005 * 111.00219 * 206.38751 * 19 4 2 39 39 H 1.09000 * 110.36397 * 155.85320 * 20 19 4 40 40 H 1.09003 * 110.36605 * 278.05649 * 20 19 4 41 41 H 1.07998 * 124.05634 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3064 -1.4457 1.6211 6 7 2.4565 0.1987 2.2904 7 6 2.5019 -0.4567 3.6043 8 6 2.9161 0.5451 4.6512 9 8 3.1508 1.6920 4.3340 10 7 3.0267 0.1663 5.9400 11 6 3.4040 1.0775 6.8923 12 1 3.6130 2.0986 6.6099 13 6 3.5175 0.6870 8.2210 14 7 3.2627 -0.5555 8.5648 15 14 4.0323 1.9283 9.5185 16 1 5.5115 1.9230 9.6494 17 1 3.5758 3.2829 9.1163 18 1 3.4188 1.5659 10.8214 19 6 3.2876 -1.5141 0.6924 20 6 2.8145 -1.8793 -0.7367 21 7 2.0300 -0.7140 -1.1838 22 6 1.8073 -0.3621 -2.4656 23 8 1.1414 0.6237 -2.7187 24 6 2.3697 -1.1707 -3.5592 25 6 2.2484 -0.9768 -4.9226 26 7 2.8876 -1.8968 -5.6063 27 7 3.5101 -2.8260 -4.9976 28 16 3.3622 -2.6362 -3.4499 29 1 -0.3634 0.4967 0.8997 30 1 -0.3633 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 1.8436 1.0001 2.3070 33 1 3.2225 -1.2740 3.5779 34 1 1.5151 -0.8499 3.8485 35 1 2.8394 -0.7511 6.1936 36 1 2.9951 -1.2000 7.8911 37 1 4.1654 -0.8687 0.6605 38 1 3.4856 -2.4106 1.2801 39 1 3.6717 -2.0337 -1.3921 40 1 2.1903 -2.7726 -0.7130 41 1 1.6964 -0.1641 -5.3712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755662573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:08 Heat of formation + Delta-G solvation = -8.321558 kcal Electronic energy + Delta-G solvation = -26326.618633 eV Core-core repulsion = 22368.560526 eV Total energy + Delta-G solvation = -3958.058108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96883 -41.40784 -40.27584 -38.98153 -36.54567 -35.75997 -33.59821 -33.10240 -32.35196 -31.78905 -28.78572 -28.16382 -26.44543 -25.34188 -24.74727 -23.20509 -21.58772 -21.50780 -20.78935 -20.02725 -19.89439 -18.38466 -17.98477 -17.91686 -17.08242 -16.83185 -16.78064 -16.47521 -15.92713 -15.67629 -15.56870 -15.45025 -14.90140 -14.55139 -14.50517 -14.30890 -14.07866 -13.75389 -13.40565 -13.32929 -13.15258 -13.07815 -12.85765 -12.73946 -12.53951 -12.11418 -11.93434 -11.86919 -11.74403 -11.50326 -11.38336 -11.21637 -11.10082 -10.90221 -10.38551 -10.07938 -9.93833 -9.43019 -8.89851 -6.03915 -1.40180 -0.29850 0.38559 0.83604 1.50768 1.53895 1.56650 1.75934 1.83058 2.04390 2.41654 2.80234 2.86532 3.15715 3.19183 3.38104 3.46864 3.54299 3.61411 3.98227 4.11268 4.15767 4.19945 4.31197 4.41204 4.43484 4.46950 4.54424 4.55580 4.67206 4.92788 4.98175 5.11023 5.18508 5.22237 5.62434 5.94577 6.01155 6.13059 6.26931 6.54210 6.61035 6.73568 6.77856 7.47644 7.96714 8.58332 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.001978 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.124488 B =14154.975965 C =14602.988570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.069 0.931 4 C 0.082 3.918 5 H 0.089 0.911 6 N -0.672 5.672 7 C 0.068 3.932 8 C 0.440 3.560 9 O -0.620 6.620 10 N -0.587 5.587 11 C -0.408 4.408 12 H 0.071 0.929 13 C -0.042 4.042 14 N -0.917 5.917 15 Si 1.133 2.867 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.273 1.273 19 C -0.118 4.118 20 C 0.084 3.916 21 N -0.601 5.601 22 C 0.615 3.385 23 O -0.552 6.552 24 C -0.304 4.304 25 C 0.076 3.924 26 N -0.277 5.277 27 N -0.304 5.304 28 S 0.517 5.483 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.346 0.654 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.386 0.614 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.347 -10.776 -21.085 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.028 4.028 5 H 0.107 0.893 6 N -0.305 5.305 7 C -0.064 4.064 8 C 0.228 3.772 9 O -0.506 6.506 10 N -0.226 5.226 11 C -0.538 4.538 12 H 0.089 0.911 13 C -0.240 4.240 14 N -0.557 5.557 15 Si 0.954 3.046 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.198 1.198 19 C -0.157 4.157 20 C -0.040 4.040 21 N -0.334 5.334 22 C 0.402 3.598 23 O -0.431 6.431 24 C -0.445 4.445 25 C -0.092 4.092 26 N -0.139 5.139 27 N -0.284 5.284 28 S 0.653 5.347 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.480 -10.970 -20.418 23.225 hybrid contribution -2.125 0.912 -1.428 2.718 sum -3.605 -10.058 -21.846 24.319 Atomic orbital electron populations 1.22120 0.93521 1.03237 1.02845 1.21615 0.94961 0.96312 0.83573 0.91336 1.22706 0.97249 0.93469 0.89423 0.89349 1.60137 1.58214 1.09290 1.02890 1.21586 1.02270 0.95240 0.87288 1.20970 0.82720 0.89942 0.83543 1.90520 1.56050 1.22657 1.81374 1.41981 1.61797 1.11995 1.06818 1.20501 1.48153 0.94558 0.90557 0.91123 1.27723 0.95731 1.01274 0.99313 1.70941 1.44503 1.03350 1.36864 0.82611 0.77183 0.72003 0.72847 1.19696 1.20460 1.19827 1.22901 0.97550 1.01737 0.93508 1.22956 0.95701 0.88949 0.96348 1.48317 1.51891 1.29209 1.04005 1.16213 0.79907 0.83187 0.80509 1.90845 1.41136 1.27807 1.83317 1.27865 1.12112 1.05959 0.98520 1.24735 0.97114 0.98804 0.88570 1.70866 1.09308 1.01039 1.32731 1.78510 1.20788 1.20788 1.08321 1.82464 1.31278 1.12234 1.08701 0.90869 0.92633 0.90733 0.83456 0.86796 0.90812 0.77980 0.92792 0.90526 0.86617 0.89534 0.86736 0.75597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.10 71.98 0.65 -2.14 16 2 C 0.14 2.61 2.98 45.34 0.14 2.74 16 3 H 0.07 1.67 7.97 -2.39 -0.02 1.65 16 4 C 0.08 1.36 2.77 46.10 0.13 1.48 16 5 H 0.09 1.13 7.61 -2.39 -0.02 1.11 16 6 N -0.67 -17.35 5.93 -489.45 -2.90 -20.25 16 7 C 0.07 1.91 6.02 85.56 0.52 2.43 16 8 C 0.44 19.31 7.82 87.66 0.69 20.00 16 9 O -0.62 -33.00 15.78 -3.07 -0.05 -33.05 16 10 N -0.59 -28.07 5.28 -306.99 -1.62 -29.69 16 11 C -0.41 -22.61 9.68 84.04 0.81 -21.80 16 12 H 0.07 4.26 7.16 -2.91 -0.02 4.24 16 13 C -0.04 -2.22 5.50 84.93 0.47 -1.75 16 14 N -0.92 -49.46 13.68 21.66 0.30 -49.16 16 15 Si 1.13 47.55 29.92 68.60 2.05 49.61 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.12 -1.47 6.71 31.98 0.21 -1.25 16 20 C 0.08 0.79 5.75 86.85 0.50 1.29 16 21 N -0.60 -9.92 3.06 -792.23 -2.43 -12.35 16 22 C 0.62 12.35 7.63 86.59 0.66 13.01 16 23 O -0.55 -15.03 16.03 -4.11 -0.07 -15.09 16 24 C -0.30 -4.81 6.66 24.62 0.16 -4.64 16 25 C 0.08 1.23 11.55 84.78 0.98 2.21 16 26 N -0.28 -5.35 11.54 -57.87 -0.67 -6.01 16 27 N -0.30 -5.40 12.51 37.02 0.46 -4.94 16 28 S 0.52 5.61 19.60 -56.49 -1.11 4.50 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.05 1.20 6.90 -2.39 -0.02 1.18 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.35 9.97 8.15 -89.69 -0.73 9.24 16 33 H 0.11 2.65 8.13 -2.39 -0.02 2.63 16 34 H 0.07 1.70 8.09 -2.38 -0.02 1.68 16 35 H 0.39 16.65 6.73 -92.71 -0.62 16.02 16 36 H 0.26 13.44 6.78 -92.71 -0.63 12.81 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.09 0.60 5.16 -13.87 -0.07 0.53 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.23 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -76.96 358.27 -0.28 -77.24 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.17 Total: 27.63 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.92 Total: 11.58 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.86 Total: -122.40 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.11 Total: -48.15 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.05 Total: 49.61 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.11 Total: 4.50 kcal Total: -76.96 -0.28 -77.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755662573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.914 kcal (2) G-P(sol) polarization free energy of solvation -76.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds