Wall clock time and date at job start Tue Mar 31 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87399 * 2 1 4 4 C 1.54323 * 109.88299 * 238.97927 * 2 1 3 5 5 H 1.08999 * 110.71616 * 144.41479 * 4 2 1 6 6 N 1.46896 * 110.71753 * 21.13804 * 4 2 1 7 7 C 1.46905 * 110.99535 * 161.32261 * 6 4 2 8 8 C 1.50704 * 109.46785 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00046 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99624 * 180.02562 * 8 7 6 11 11 C 1.37105 * 119.99744 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99667 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99844 * 179.97438 * 11 10 8 14 14 N 1.31415 * 120.00142 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47025 * 59.99907 * 15 13 11 17 17 H 1.48499 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47208 * 300.00566 * 15 13 11 19 19 C 1.55551 * 102.76085 * 262.74165 * 4 2 1 20 20 C 1.54906 * 101.59803 * 324.47116 * 19 4 2 21 21 N 1.47030 * 109.88327 * 121.01099 * 2 1 3 22 22 C 1.34777 * 125.64805 * 300.44378 * 21 2 1 23 23 O 1.21623 * 119.99792 * 359.97438 * 22 21 2 24 24 C 1.47168 * 120.00216 * 180.02562 * 22 21 2 25 25 C 1.38242 * 128.48019 * 179.70374 * 24 22 21 26 26 N 1.31235 * 111.89222 * 179.81147 * 25 24 22 27 27 N 1.27342 * 120.03666 * 0.52726 * 26 25 24 28 28 S 1.56636 * 109.73815 * 359.69728 * 27 26 25 29 29 H 1.09000 * 109.46874 * 292.74249 * 1 2 3 30 30 H 1.09004 * 109.47223 * 172.74904 * 1 2 3 31 31 H 1.08994 * 109.47484 * 52.74435 * 1 2 3 32 32 H 1.00897 * 110.99941 * 37.37389 * 6 4 2 33 33 H 1.08994 * 109.47280 * 300.00095 * 7 6 4 34 34 H 1.08999 * 109.46838 * 60.00292 * 7 6 4 35 35 H 0.96994 * 120.00117 * 359.97438 * 10 8 7 36 36 H 0.97003 * 119.99745 * 179.97438 * 14 13 11 37 37 H 1.08992 * 110.97001 * 206.40176 * 19 4 2 38 38 H 1.09002 * 111.05386 * 82.57336 * 19 4 2 39 39 H 1.09008 * 110.36531 * 278.20244 * 20 19 4 40 40 H 1.08998 * 110.37077 * 155.88332 * 20 19 4 41 41 H 1.08003 * 124.05061 * 359.97026 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 2.9657 -0.2810 -1.6185 6 7 1.0265 -0.7997 -2.2913 7 6 1.6234 -1.0953 -3.6007 8 6 0.5404 -1.1410 -4.6476 9 8 -0.6150 -0.9460 -4.3340 10 7 0.8556 -1.3986 -5.9325 11 6 -0.1296 -1.4396 -6.8851 12 1 -1.1581 -1.2651 -6.6059 13 6 0.1955 -1.7046 -8.2097 14 7 1.4473 -1.9154 -8.5496 15 14 -1.1469 -1.7612 -9.5075 16 1 -1.8372 -0.4475 -9.5633 17 1 -0.5435 -2.0594 -10.8312 18 1 -2.1273 -2.8210 -9.1597 19 6 2.3520 -2.1705 -0.6891 20 6 2.8568 -1.8487 0.7395 21 7 2.0301 -0.7123 1.1850 22 6 1.7754 -0.3809 2.4663 23 8 1.0772 0.5827 2.7179 24 6 2.3429 -1.1842 3.5610 25 6 2.2020 -1.0021 4.9241 26 7 2.8474 -1.9166 5.6093 27 7 3.5081 -2.8201 5.0019 28 16 3.3809 -2.6181 3.4539 29 1 -0.3633 0.3973 0.9478 30 1 -0.3634 -1.0195 -0.1297 31 1 -0.3634 0.6221 -0.8179 32 1 0.4968 0.0585 -2.3209 33 1 2.3433 -0.3177 -3.8557 34 1 2.1296 -2.0598 -3.5598 35 1 1.7796 -1.5541 -6.1833 36 1 1.6741 -2.1007 -9.4743 37 1 3.1271 -2.6637 -1.2756 38 1 1.4456 -2.7751 -0.6563 39 1 3.9092 -1.5656 0.7152 40 1 2.7089 -2.7059 1.3963 41 1 1.6275 -0.2045 5.3715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755662574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:12 Heat of formation + Delta-G solvation = 23.265222 kcal Electronic energy + Delta-G solvation = -26397.274398 eV Core-core repulsion = 22440.585996 eV Total energy + Delta-G solvation = -3956.688402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25488 -40.63135 -38.58228 -37.85282 -35.00070 -33.89014 -32.73057 -31.46274 -31.30658 -30.78952 -27.94189 -26.75528 -25.51975 -24.25614 -23.78084 -22.64540 -20.33060 -20.01962 -19.38171 -19.22853 -17.98324 -17.63020 -16.69093 -16.51436 -16.23182 -15.92909 -15.49829 -15.22787 -14.97305 -14.55137 -14.23078 -14.00258 -13.84298 -13.58107 -13.33666 -13.10695 -12.65338 -12.58609 -12.41579 -12.32726 -12.08432 -11.79230 -11.63038 -11.54452 -11.18510 -11.02872 -10.84998 -10.53846 -10.52017 -10.47936 -10.36103 -10.25910 -10.24879 -9.54876 -9.15521 -8.55870 -8.22056 -8.01697 -6.46594 -3.87600 -0.71142 0.34429 1.04003 1.54828 2.29793 2.54709 3.16784 3.23069 3.27257 3.54629 3.84009 3.85433 3.96762 4.16853 4.22308 4.25354 4.33116 4.72730 4.80900 4.96185 4.98808 5.11040 5.13919 5.20862 5.28167 5.37308 5.42177 5.63154 5.70823 5.86757 5.89177 5.96730 6.06146 6.19503 6.37489 6.90265 7.05577 7.21188 7.47310 7.50561 7.55024 8.00694 8.55437 9.12779 9.48485 9.99510 10.70878 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.001988 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.268785 B =14080.200056 C =14607.806290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.081 0.919 4 C 0.077 3.923 5 H 0.063 0.937 6 N -0.654 5.654 7 C 0.049 3.951 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.119 4.119 20 C 0.086 3.914 21 N -0.602 5.602 22 C 0.616 3.384 23 O -0.513 6.513 24 C -0.284 4.284 25 C 0.073 3.927 26 N -0.252 5.252 27 N -0.272 5.272 28 S 0.432 5.568 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.355 0.645 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.819 -0.157 20.467 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.034 4.034 5 H 0.081 0.919 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.158 4.158 20 C -0.039 4.039 21 N -0.336 5.336 22 C 0.402 3.598 23 O -0.389 6.389 24 C -0.425 4.425 25 C -0.094 4.094 26 N -0.116 5.116 27 N -0.252 5.252 28 S 0.568 5.432 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.686 -1.738 21.224 22.999 hybrid contribution -0.340 1.787 -1.080 2.116 sum 8.346 0.049 20.144 21.804 Atomic orbital electron populations 1.22025 0.92992 1.03941 1.02690 1.21707 0.96353 0.95389 0.82847 0.90128 1.22634 0.94301 0.95391 0.91112 0.91941 1.60293 1.22869 1.42738 1.02965 1.21733 0.96050 1.01516 0.89018 1.19757 0.89621 0.84769 0.83377 1.90535 1.20511 1.54917 1.80733 1.41852 1.10507 1.61792 1.05734 1.19650 0.90917 1.45490 0.86922 0.87948 1.25265 0.97217 0.97140 0.98278 1.69602 1.16911 1.48247 1.19505 0.85915 0.80217 0.79020 0.79063 1.19902 1.20976 1.19857 1.22935 1.02982 0.97460 0.92397 1.22708 0.95629 0.88390 0.97194 1.48321 1.50194 1.30495 1.04631 1.16019 0.80450 0.83447 0.79933 1.90863 1.37835 1.27477 1.82736 1.28008 1.10265 1.05193 0.99025 1.24492 0.97977 0.98515 0.88413 1.70807 1.07903 1.00911 1.31961 1.78747 1.19424 1.20749 1.06274 1.82902 1.32738 1.16364 1.11157 0.91511 0.90965 0.90859 0.82212 0.93656 0.89463 0.77463 0.91787 0.89213 0.88722 0.89923 0.90761 0.76764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.30 37.16 0.31 -1.53 16 2 C 0.14 1.40 3.40 -66.95 -0.23 1.17 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.08 0.75 3.11 -65.66 -0.20 0.54 16 5 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 6 N -0.65 -8.86 5.13 -105.83 -0.54 -9.40 16 7 C 0.05 0.76 6.03 -4.97 -0.03 0.73 16 8 C 0.44 9.66 7.82 -10.98 -0.09 9.58 16 9 O -0.58 -14.98 15.78 5.55 0.09 -14.89 16 10 N -0.56 -13.55 5.29 -10.96 -0.06 -13.60 16 11 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 12 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -23.79 13.05 55.50 0.72 -23.06 16 15 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.12 -0.95 6.68 -24.37 -0.16 -1.11 16 20 C 0.09 0.56 5.75 -2.53 -0.01 0.54 16 21 N -0.60 -5.54 3.08 -164.37 -0.51 -6.04 16 22 C 0.62 6.48 7.61 -12.63 -0.10 6.39 16 23 O -0.51 -6.90 15.79 5.26 0.08 -6.82 16 24 C -0.28 -2.47 6.66 -35.96 -0.24 -2.71 16 25 C 0.07 0.63 11.55 -17.80 -0.21 0.42 16 26 N -0.25 -2.56 11.54 30.36 0.35 -2.21 16 27 N -0.27 -2.65 12.51 60.35 0.75 -1.90 16 28 S 0.43 2.96 19.60 -107.50 -2.11 0.85 16 29 H 0.07 0.84 6.53 -51.93 -0.34 0.50 16 30 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 31 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 32 H 0.36 5.13 6.40 -39.29 -0.25 4.88 16 33 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.07 0.40 5.16 -33.88 -0.17 0.23 16 41 H 0.22 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -32.72 355.70 -6.81 -39.52 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.73 Total: 10.40 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.20 Total: 6.27 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.72 Total: -56.22 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.11 Total: 0.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.72 -6.81 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755662574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.790 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds