Wall clock time and date at job start Tue Mar 31 2020 23:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87399 * 2 1 4 4 C 1.54323 * 109.88299 * 238.97927 * 2 1 3 5 5 H 1.08999 * 110.71616 * 144.41479 * 4 2 1 6 6 N 1.46896 * 110.71753 * 21.13804 * 4 2 1 7 7 C 1.46905 * 110.99535 * 161.32261 * 6 4 2 8 8 C 1.50704 * 109.46785 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00046 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99624 * 180.02562 * 8 7 6 11 11 C 1.37105 * 119.99744 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99667 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99844 * 179.97438 * 11 10 8 14 14 N 1.31415 * 120.00142 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47025 * 59.99907 * 15 13 11 17 17 H 1.48499 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47208 * 300.00566 * 15 13 11 19 19 C 1.55551 * 102.76085 * 262.74165 * 4 2 1 20 20 C 1.54906 * 101.59803 * 324.47116 * 19 4 2 21 21 N 1.47030 * 109.88327 * 121.01099 * 2 1 3 22 22 C 1.34777 * 125.64805 * 300.44378 * 21 2 1 23 23 O 1.21623 * 119.99792 * 359.97438 * 22 21 2 24 24 C 1.47168 * 120.00216 * 180.02562 * 22 21 2 25 25 C 1.38242 * 128.48019 * 179.70374 * 24 22 21 26 26 N 1.31235 * 111.89222 * 179.81147 * 25 24 22 27 27 N 1.27342 * 120.03666 * 0.52726 * 26 25 24 28 28 S 1.56636 * 109.73815 * 359.69728 * 27 26 25 29 29 H 1.09000 * 109.46874 * 292.74249 * 1 2 3 30 30 H 1.09004 * 109.47223 * 172.74904 * 1 2 3 31 31 H 1.08994 * 109.47484 * 52.74435 * 1 2 3 32 32 H 1.00897 * 110.99941 * 37.37389 * 6 4 2 33 33 H 1.08994 * 109.47280 * 300.00095 * 7 6 4 34 34 H 1.08999 * 109.46838 * 60.00292 * 7 6 4 35 35 H 0.96994 * 120.00117 * 359.97438 * 10 8 7 36 36 H 0.97003 * 119.99745 * 179.97438 * 14 13 11 37 37 H 1.08992 * 110.97001 * 206.40176 * 19 4 2 38 38 H 1.09002 * 111.05386 * 82.57336 * 19 4 2 39 39 H 1.09008 * 110.36531 * 278.20244 * 20 19 4 40 40 H 1.08998 * 110.37077 * 155.88332 * 20 19 4 41 41 H 1.08003 * 124.05061 * 359.97026 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 2.9657 -0.2810 -1.6185 6 7 1.0265 -0.7997 -2.2913 7 6 1.6234 -1.0953 -3.6007 8 6 0.5404 -1.1410 -4.6476 9 8 -0.6150 -0.9460 -4.3340 10 7 0.8556 -1.3986 -5.9325 11 6 -0.1296 -1.4396 -6.8851 12 1 -1.1581 -1.2651 -6.6059 13 6 0.1955 -1.7046 -8.2097 14 7 1.4473 -1.9154 -8.5496 15 14 -1.1469 -1.7612 -9.5075 16 1 -1.8372 -0.4475 -9.5633 17 1 -0.5435 -2.0594 -10.8312 18 1 -2.1273 -2.8210 -9.1597 19 6 2.3520 -2.1705 -0.6891 20 6 2.8568 -1.8487 0.7395 21 7 2.0301 -0.7123 1.1850 22 6 1.7754 -0.3809 2.4663 23 8 1.0772 0.5827 2.7179 24 6 2.3429 -1.1842 3.5610 25 6 2.2020 -1.0021 4.9241 26 7 2.8474 -1.9166 5.6093 27 7 3.5081 -2.8201 5.0019 28 16 3.3809 -2.6181 3.4539 29 1 -0.3633 0.3973 0.9478 30 1 -0.3634 -1.0195 -0.1297 31 1 -0.3634 0.6221 -0.8179 32 1 0.4968 0.0585 -2.3209 33 1 2.3433 -0.3177 -3.8557 34 1 2.1296 -2.0598 -3.5598 35 1 1.7796 -1.5541 -6.1833 36 1 1.6741 -2.1007 -9.4743 37 1 3.1271 -2.6637 -1.2756 38 1 1.4456 -2.7751 -0.6563 39 1 3.9092 -1.5656 0.7152 40 1 2.7089 -2.7059 1.3963 41 1 1.6275 -0.2045 5.3715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755662574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:11 Heat of formation + Delta-G solvation = -2.204241 kcal Electronic energy + Delta-G solvation = -26398.378837 eV Core-core repulsion = 22440.585996 eV Total energy + Delta-G solvation = -3957.792841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94623 -41.39640 -40.09656 -38.94427 -36.22429 -35.60701 -33.51287 -33.20389 -32.19892 -31.72572 -28.77096 -28.01813 -26.62117 -25.58939 -24.65733 -23.36897 -21.16492 -20.95592 -20.73117 -19.97444 -19.87320 -18.40937 -17.74838 -17.36652 -17.24777 -16.88067 -16.73439 -16.31762 -16.09825 -15.79842 -15.55758 -15.30808 -14.90629 -14.44614 -14.41090 -14.04984 -13.82777 -13.55128 -13.40144 -13.35820 -13.19130 -13.03561 -12.87203 -12.67866 -12.57379 -12.40373 -12.11840 -11.92462 -11.65772 -11.47006 -11.33031 -11.19445 -11.05872 -10.87691 -10.29411 -9.97713 -9.90022 -9.31079 -8.44019 -5.91895 -1.37615 -0.27220 0.41095 0.86115 1.41354 1.43660 1.53370 1.56209 1.79342 2.10804 2.31170 2.89117 2.93729 3.19547 3.24199 3.51336 3.53426 3.60062 3.65434 4.03239 4.19973 4.25503 4.32736 4.41602 4.51621 4.52941 4.55815 4.60936 4.65646 4.71471 5.01696 5.04134 5.18874 5.26819 5.39944 5.43951 5.92157 6.12847 6.18488 6.37976 6.56551 6.64164 6.77407 7.16547 7.61409 8.17079 8.72889 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.001988 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.268785 B =14080.200056 C =14607.806290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 H 0.084 0.916 4 C 0.080 3.920 5 H 0.087 0.913 6 N -0.668 5.668 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.574 5.574 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.989 3.011 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.273 1.273 19 C -0.116 4.116 20 C 0.083 3.917 21 N -0.601 5.601 22 C 0.615 3.385 23 O -0.551 6.551 24 C -0.303 4.303 25 C 0.075 3.925 26 N -0.277 5.277 27 N -0.305 5.305 28 S 0.517 5.483 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.347 0.653 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -0.971 20.322 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.102 0.898 4 C -0.031 4.031 5 H 0.105 0.895 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.813 3.187 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.155 4.155 20 C -0.040 4.040 21 N -0.334 5.334 22 C 0.402 3.598 23 O -0.431 6.431 24 C -0.444 4.444 25 C -0.093 4.093 26 N -0.140 5.140 27 N -0.285 5.285 28 S 0.653 5.347 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 10.780 -2.587 21.094 23.830 hybrid contribution -0.976 2.012 -1.027 2.461 sum 9.804 -0.575 20.066 22.341 Atomic orbital electron populations 1.21902 0.94702 1.02671 1.01599 1.21629 0.94938 0.95967 0.83619 0.89810 1.22722 0.93877 0.96885 0.89584 0.89522 1.60284 1.24377 1.42678 1.02952 1.21586 0.93694 1.03763 0.87565 1.20975 0.90667 0.82095 0.83778 1.90508 1.23065 1.56046 1.81482 1.41921 1.10174 1.62755 1.06292 1.19589 0.90722 1.47425 0.88431 0.90480 1.25972 0.99335 0.96389 0.99526 1.69654 1.17949 1.48270 1.20117 0.85046 0.77798 0.78793 0.77058 1.19865 1.19604 1.19854 1.22950 1.03109 0.96076 0.93345 1.22962 0.96738 0.87867 0.96454 1.48355 1.50068 1.30960 1.04019 1.16199 0.79962 0.83136 0.80497 1.90841 1.39603 1.29240 1.83372 1.27885 1.11504 1.06461 0.98551 1.24729 0.97559 0.98437 0.88574 1.70862 1.08845 1.01511 1.32775 1.78509 1.20217 1.21396 1.08394 1.82472 1.29929 1.13645 1.08623 0.92891 0.92342 0.91512 0.83128 0.91087 0.87012 0.76870 0.91368 0.86726 0.90503 0.86745 0.89616 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.30 71.98 0.60 -2.96 16 2 C 0.14 2.64 3.40 45.34 0.15 2.79 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.08 1.32 3.11 46.24 0.14 1.47 16 5 H 0.09 1.12 7.92 -2.39 -0.02 1.10 16 6 N -0.67 -17.08 5.13 -488.73 -2.51 -19.59 16 7 C 0.07 1.87 6.03 85.56 0.52 2.39 16 8 C 0.44 19.15 7.82 87.66 0.69 19.83 16 9 O -0.62 -32.76 15.78 -3.07 -0.05 -32.80 16 10 N -0.57 -27.73 5.29 -306.98 -1.62 -29.36 16 11 C -0.33 -18.22 9.68 84.04 0.81 -17.40 16 12 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 13 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 14 N -0.92 -47.93 13.05 21.66 0.28 -47.65 16 15 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 C -0.12 -1.44 6.68 32.12 0.21 -1.23 16 20 C 0.08 0.78 5.75 86.85 0.50 1.28 16 21 N -0.60 -9.87 3.08 -792.18 -2.44 -12.31 16 22 C 0.62 12.32 7.61 86.59 0.66 12.98 16 23 O -0.55 -14.94 15.79 -4.10 -0.06 -15.00 16 24 C -0.30 -4.82 6.66 24.62 0.16 -4.66 16 25 C 0.07 1.23 11.55 84.78 0.98 2.21 16 26 N -0.28 -5.40 11.54 -57.87 -0.67 -6.07 16 27 N -0.30 -5.47 12.51 37.02 0.46 -5.01 16 28 S 0.52 5.69 19.60 -56.49 -1.11 4.58 16 29 H 0.05 1.39 6.53 -2.39 -0.02 1.37 16 30 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 31 H 0.07 1.63 6.71 -2.39 -0.02 1.62 16 32 H 0.35 9.88 6.40 -89.70 -0.57 9.30 16 33 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 34 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 35 H 0.40 18.02 7.90 -92.71 -0.73 17.29 16 36 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.09 0.60 5.16 -13.87 -0.07 0.53 16 41 H 0.23 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -73.05 355.70 -0.05 -73.10 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.26 Total: 29.61 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.89 Total: 16.53 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -6.49 Total: -119.98 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.11 Total: -47.80 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.11 Total: 4.58 kcal Total: -73.05 -0.05 -73.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755662574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.895 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds