Wall clock time and date at job start Tue Mar 31 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48491 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47067 * 300.00360 * 3 2 1 6 6 H 1.48502 * 109.46824 * 59.99842 * 3 2 1 7 7 C 1.38797 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00394 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00230 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47328 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99704 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00299 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00338 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47402 * 179.97438 * 14 13 11 16 16 C 1.53782 * 113.61734 * 185.00278 * 15 14 13 17 17 C 1.53781 * 87.08260 * 220.02231 * 16 15 14 18 18 N 1.46497 * 113.61305 * 270.79919 * 17 16 15 19 19 C 1.34780 * 119.99653 * 203.46742 * 18 17 16 20 20 O 1.21609 * 120.00567 * 0.02562 * 19 18 17 21 21 C 1.47240 * 119.99653 * 180.02562 * 19 18 17 22 22 C 1.37005 * 127.18859 * 179.68958 * 21 19 18 23 23 N 1.33319 * 106.37326 * 179.84202 * 22 21 19 24 24 N 1.28511 * 109.43829 * 0.43088 * 23 22 21 25 25 N 1.28712 * 110.64110 * 359.72257 * 24 23 22 26 26 H 0.97001 * 126.04495 * 179.97438 * 25 24 23 27 27 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 28 28 H 0.96996 * 119.99905 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46977 * 59.99884 * 10 9 7 30 30 H 1.09007 * 109.46985 * 300.00249 * 10 9 7 31 31 H 0.97001 * 119.99532 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.46421 * 60.00658 * 14 13 11 33 33 H 1.08998 * 109.47294 * 300.00704 * 14 13 11 34 34 H 1.09002 * 112.84929 * 316.20353 * 15 14 13 35 35 H 1.09001 * 113.61250 * 105.47049 * 16 15 14 36 36 H 1.08996 * 113.68722 * 334.58363 * 16 15 14 37 37 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 38 38 H 0.96995 * 120.00146 * 23.47603 * 18 17 16 39 39 H 1.07998 * 126.81416 * 359.97438 * 22 21 19 40 40 H 1.08993 * 113.61491 * 89.15923 * 27 17 16 41 41 H 1.09000 * 113.61138 * 220.06261 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.5023 -8.6986 -0.0033 16 6 3.0719 -10.1698 -0.1263 17 6 4.1665 -10.4944 0.9038 18 7 5.4728 -10.7756 0.3032 19 6 6.3789 -11.5128 0.9754 20 8 6.1121 -11.9450 2.0804 21 6 7.6920 -11.7950 0.3719 22 6 8.7181 -12.5174 0.9218 23 7 9.7032 -12.5144 0.0236 24 7 9.3398 -11.8391 -1.0076 25 7 8.1452 -11.3850 -0.8546 26 1 7.6528 -10.8471 -1.4943 27 6 4.0173 -9.0481 1.4049 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1245 -3.7313 -0.8906 31 1 3.8008 -6.1835 -0.0022 32 1 1.7214 -7.8749 -0.8917 33 1 1.7221 -7.8754 0.8883 34 1 4.2920 -8.4150 -0.6991 35 1 3.2581 -10.5983 -1.1111 36 1 2.0616 -10.3621 0.2348 37 1 3.8677 -11.2435 1.6371 38 1 5.6855 -10.4311 -0.5782 39 1 8.7263 -12.9962 1.8898 40 1 3.2660 -8.9320 2.1859 41 1 4.9658 -8.5725 1.6545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755939185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:03 Heat of formation + Delta-G solvation = 41.761749 kcal Electronic energy + Delta-G solvation = -25047.293855 eV Core-core repulsion = 21091.407522 eV Total energy + Delta-G solvation = -3955.886333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.99192 -40.92297 -39.42818 -38.60310 -35.05791 -34.29708 -33.38573 -32.46815 -31.92931 -29.96543 -27.48455 -26.30021 -25.54386 -25.18713 -23.71710 -22.83417 -21.89469 -20.57258 -20.07306 -19.69652 -17.91563 -17.39295 -17.03490 -16.82465 -16.36382 -16.16824 -15.65822 -15.45177 -15.20404 -14.92903 -14.84231 -14.54196 -14.21953 -14.00067 -13.43674 -13.07269 -12.99967 -12.83621 -12.64693 -12.52624 -11.92740 -11.84145 -11.49341 -11.41502 -11.23457 -11.10425 -11.06090 -10.90147 -10.81953 -10.75756 -10.21919 -9.84973 -9.80861 -9.46231 -9.11811 -8.95829 -8.27911 -6.54514 -6.25770 -3.96584 0.20757 1.66564 1.73890 2.16780 2.37393 2.96910 3.03297 3.18445 3.24888 3.29105 3.61433 3.62872 3.83683 3.99611 4.06490 4.16449 4.24280 4.29791 4.32774 4.50528 4.80238 5.00083 5.09585 5.13586 5.15533 5.20553 5.22485 5.34849 5.37159 5.51429 5.56594 5.63392 5.75934 5.83357 5.87876 5.95724 6.07992 6.53383 6.56358 7.26956 7.55831 7.61206 7.62351 8.31358 8.54376 9.19782 10.81719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.001683 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.198868 B =16633.695859 C =17707.565480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.131 3.869 15 C -0.125 4.125 16 C -0.133 4.133 17 C 0.118 3.882 18 N -0.707 5.707 19 C 0.600 3.400 20 O -0.507 6.507 21 C -0.070 4.070 22 C 0.037 3.963 23 N -0.268 5.268 24 N -0.041 5.041 25 N -0.374 5.374 26 H 0.451 0.549 27 C -0.145 4.145 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.396 0.604 39 H 0.206 0.794 40 H 0.100 0.900 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -25.555 -1.498 29.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.007 3.993 15 C -0.143 4.143 16 C -0.172 4.172 17 C 0.013 3.987 18 N -0.358 5.358 19 C 0.383 3.617 20 O -0.379 6.379 21 C -0.204 4.204 22 C -0.122 4.122 23 N -0.133 5.133 24 N -0.024 5.024 25 N -0.102 5.102 26 H 0.298 0.702 27 C -0.183 4.183 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.230 0.770 39 H 0.223 0.777 40 H 0.118 0.882 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.046 -26.272 -1.497 29.371 hybrid contribution 1.325 2.058 -0.260 2.461 sum 14.371 -24.214 -1.757 28.212 Atomic orbital electron populations 1.70024 1.05951 1.27388 1.46871 1.24997 0.95037 0.99058 0.94512 0.86113 0.79563 0.81858 0.77936 1.19633 1.20550 1.20531 1.22904 0.94927 0.91630 1.58934 0.90885 1.85407 1.04913 0.96376 1.96715 1.23531 1.06593 0.95456 1.04861 1.20318 0.86534 0.86324 0.75130 1.90707 1.15385 1.85624 1.47444 1.45985 1.09832 1.05483 1.78044 1.21258 0.95118 0.80406 1.02529 1.22920 0.98372 0.94872 0.98179 1.23309 0.99426 0.94883 0.99575 1.21973 0.81620 0.98280 0.96818 1.45553 1.15625 1.53787 1.20852 1.16715 0.81480 0.78516 0.84978 1.90903 1.77387 1.51150 1.18471 1.22362 0.99333 1.09218 0.89519 1.23988 0.88013 0.98921 1.01282 1.75058 1.25039 1.14937 0.98273 1.78279 0.95085 1.09372 1.19642 1.45626 1.12776 1.37225 1.14557 0.70245 1.23575 1.02570 0.95174 0.96991 0.92203 0.89255 0.89303 0.76960 0.91451 0.91265 0.88779 0.90440 0.87655 0.87126 0.76962 0.77707 0.88187 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.98 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.32 7.85 -10.99 -0.09 9.24 16 12 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 13 N -0.74 -8.55 5.56 -60.30 -0.33 -8.88 16 14 C 0.13 1.21 5.51 -4.05 -0.02 1.18 16 15 C -0.12 -0.62 3.64 -89.71 -0.33 -0.95 16 16 C -0.13 -0.50 7.38 -25.92 -0.19 -0.69 16 17 C 0.12 0.55 4.30 -67.12 -0.29 0.26 16 18 N -0.71 -2.56 5.26 -54.15 -0.28 -2.84 16 19 C 0.60 3.74 7.81 -12.60 -0.10 3.65 16 20 O -0.51 -5.02 16.54 5.27 0.09 -4.93 16 21 C -0.07 -0.39 7.17 -82.33 -0.59 -0.98 16 22 C 0.04 0.25 11.87 -17.35 -0.21 0.05 16 23 N -0.27 -2.33 12.35 30.47 0.38 -1.95 16 24 N -0.04 -0.31 13.35 60.35 0.81 0.50 16 25 N -0.37 -1.50 6.98 33.31 0.23 -1.26 16 26 H 0.45 -0.03 8.32 -190.33 -1.58 -1.62 16 27 C -0.14 -0.78 7.45 -25.82 -0.19 -0.97 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 31 H 0.40 3.44 8.47 -40.82 -0.35 3.09 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.71 7.85 -51.93 -0.41 0.31 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.11 0.40 8.10 -51.93 -0.42 -0.02 16 37 H 0.11 0.66 7.50 -51.93 -0.39 0.27 16 38 H 0.40 0.29 7.97 -40.82 -0.33 -0.04 16 39 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.10 0.61 7.90 -51.93 -0.41 0.20 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -38.52 373.81 -7.87 -46.39 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.39 Total: -3.84 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.58 Total: -4.75 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 1.53 Total: -39.57 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.18 Total: -16.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.52 -7.87 -46.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755939185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.153 kcal (2) G-P(sol) polarization free energy of solvation -38.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds