Wall clock time and date at job start Tue Mar 31 2020 22:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48491 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47067 * 300.00360 * 3 2 1 6 6 H 1.48502 * 109.46824 * 59.99842 * 3 2 1 7 7 C 1.38797 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00394 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00230 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47328 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99704 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00299 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00338 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47402 * 179.97438 * 14 13 11 16 16 C 1.53782 * 113.61734 * 185.00278 * 15 14 13 17 17 C 1.53781 * 87.08260 * 220.02231 * 16 15 14 18 18 N 1.46497 * 113.61305 * 270.79919 * 17 16 15 19 19 C 1.34780 * 119.99653 * 203.46742 * 18 17 16 20 20 O 1.21609 * 120.00567 * 0.02562 * 19 18 17 21 21 C 1.47240 * 119.99653 * 180.02562 * 19 18 17 22 22 C 1.37005 * 127.18859 * 179.68958 * 21 19 18 23 23 N 1.33319 * 106.37326 * 179.84202 * 22 21 19 24 24 N 1.28511 * 109.43829 * 0.43088 * 23 22 21 25 25 N 1.28712 * 110.64110 * 359.72257 * 24 23 22 26 26 H 0.97001 * 126.04495 * 179.97438 * 25 24 23 27 27 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 28 28 H 0.96996 * 119.99905 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46977 * 59.99884 * 10 9 7 30 30 H 1.09007 * 109.46985 * 300.00249 * 10 9 7 31 31 H 0.97001 * 119.99532 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.46421 * 60.00658 * 14 13 11 33 33 H 1.08998 * 109.47294 * 300.00704 * 14 13 11 34 34 H 1.09002 * 112.84929 * 316.20353 * 15 14 13 35 35 H 1.09001 * 113.61250 * 105.47049 * 16 15 14 36 36 H 1.08996 * 113.68722 * 334.58363 * 16 15 14 37 37 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 38 38 H 0.96995 * 120.00146 * 23.47603 * 18 17 16 39 39 H 1.07998 * 126.81416 * 359.97438 * 22 21 19 40 40 H 1.08993 * 113.61491 * 89.15923 * 27 17 16 41 41 H 1.09000 * 113.61138 * 220.06261 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.5023 -8.6986 -0.0033 16 6 3.0719 -10.1698 -0.1263 17 6 4.1665 -10.4944 0.9038 18 7 5.4728 -10.7756 0.3032 19 6 6.3789 -11.5128 0.9754 20 8 6.1121 -11.9450 2.0804 21 6 7.6920 -11.7950 0.3719 22 6 8.7181 -12.5174 0.9218 23 7 9.7032 -12.5144 0.0236 24 7 9.3398 -11.8391 -1.0076 25 7 8.1452 -11.3850 -0.8546 26 1 7.6528 -10.8471 -1.4943 27 6 4.0173 -9.0481 1.4049 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1245 -3.7313 -0.8906 31 1 3.8008 -6.1835 -0.0022 32 1 1.7214 -7.8749 -0.8917 33 1 1.7221 -7.8754 0.8883 34 1 4.2920 -8.4150 -0.6991 35 1 3.2581 -10.5983 -1.1111 36 1 2.0616 -10.3621 0.2348 37 1 3.8677 -11.2435 1.6371 38 1 5.6855 -10.4311 -0.5782 39 1 8.7263 -12.9962 1.8898 40 1 3.2660 -8.9320 2.1859 41 1 4.9658 -8.5725 1.6545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755939185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:02 Heat of formation + Delta-G solvation = 9.990362 kcal Electronic energy + Delta-G solvation = -25048.671566 eV Core-core repulsion = 21091.407522 eV Total energy + Delta-G solvation = -3957.264043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.46770 -41.43201 -40.52765 -39.36223 -35.87804 -35.00307 -34.58873 -33.99496 -32.44401 -31.28555 -28.42359 -27.60830 -26.68630 -25.75124 -24.24337 -23.40684 -22.36623 -21.79222 -20.56747 -20.25564 -19.74932 -17.95739 -17.74736 -17.49962 -17.37582 -17.07092 -16.88474 -16.67769 -16.03781 -15.97025 -15.75459 -15.40334 -15.12909 -15.03075 -14.59073 -14.49021 -13.93871 -13.53616 -13.39191 -13.35223 -13.16328 -12.94665 -12.87329 -12.61511 -12.43273 -12.02339 -11.88505 -11.76967 -11.65234 -11.44504 -11.27707 -11.16437 -10.89109 -10.72784 -10.27078 -10.23313 -10.05114 -8.66821 -8.35419 -6.13198 -0.25401 1.14259 1.27645 1.37307 1.40865 1.47682 1.58326 1.63569 1.79074 1.89155 2.25914 2.33018 2.98945 3.22835 3.31594 3.44522 3.56071 3.58040 3.79392 3.83770 3.88628 4.04272 4.04713 4.29918 4.32715 4.51541 4.58227 4.65845 4.79499 4.83544 4.87225 4.89588 5.05988 5.08982 5.13917 5.41683 5.44809 5.57029 5.63590 6.19503 6.21802 6.53668 6.86354 7.06269 7.12104 7.27858 8.73988 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.001683 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.198868 B =16633.695859 C =17707.565480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.128 3.872 15 C -0.112 4.112 16 C -0.122 4.122 17 C 0.120 3.880 18 N -0.689 5.689 19 C 0.605 3.395 20 O -0.547 6.547 21 C -0.063 4.063 22 C 0.026 3.974 23 N -0.299 5.299 24 N -0.059 5.059 25 N -0.347 5.347 26 H 0.469 0.531 27 C -0.147 4.147 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.414 0.586 39 H 0.217 0.783 40 H 0.090 0.910 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.293 -25.713 -2.461 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.282 4.282 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.004 3.996 15 C -0.130 4.130 16 C -0.160 4.160 17 C 0.015 3.985 18 N -0.341 5.341 19 C 0.389 3.611 20 O -0.422 6.422 21 C -0.198 4.198 22 C -0.134 4.134 23 N -0.163 5.163 24 N -0.041 5.041 25 N -0.078 5.078 26 H 0.320 0.680 27 C -0.185 4.185 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.251 0.749 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.233 -26.442 -2.520 30.620 hybrid contribution 0.662 1.992 0.042 2.100 sum 15.896 -24.449 -2.478 29.268 Atomic orbital electron populations 1.70186 1.07959 1.28535 1.48076 1.26123 0.95964 1.03318 0.93788 0.84912 0.78635 0.76391 0.78052 1.17997 1.19946 1.20024 1.23239 0.95344 0.92024 1.58717 0.89894 1.85587 1.10736 0.99308 1.97044 1.23381 1.03452 0.94601 1.06723 1.20048 0.86277 0.86758 0.75208 1.90696 1.17547 1.86149 1.50300 1.45737 1.10145 1.05214 1.75304 1.21452 0.96867 0.79540 1.01707 1.22915 0.97281 0.94330 0.98522 1.23270 0.99003 0.93479 1.00285 1.21877 0.82127 0.97435 0.97075 1.45386 1.14754 1.52653 1.21279 1.16708 0.81674 0.78265 0.84454 1.90896 1.78092 1.52912 1.20279 1.22191 0.98827 1.08964 0.89796 1.24295 0.88081 0.99280 1.01727 1.75037 1.26206 1.16086 0.99020 1.78211 0.96246 1.10004 1.19645 1.45570 1.11876 1.36123 1.14251 0.68015 1.23570 1.02281 0.95672 0.97019 0.92006 0.87388 0.87166 0.74743 0.92063 0.92497 0.86217 0.88381 0.87741 0.88443 0.74871 0.76679 0.89159 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -30.61 9.50 67.95 0.65 -29.97 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -4.89 6.16 71.23 0.44 -4.45 16 11 C 0.53 18.15 7.85 87.66 0.69 18.84 16 12 O -0.57 -25.18 15.86 -3.03 -0.05 -25.23 16 13 N -0.71 -14.72 5.56 -463.08 -2.57 -17.29 16 14 C 0.13 2.09 5.51 86.38 0.48 2.57 16 15 C -0.11 -0.74 3.64 -10.21 -0.04 -0.78 16 16 C -0.12 -0.53 7.38 31.12 0.23 -0.30 16 17 C 0.12 0.82 4.30 45.52 0.20 1.01 16 18 N -0.69 -2.93 5.26 -443.49 -2.33 -5.26 16 19 C 0.61 6.41 7.81 86.61 0.68 7.09 16 20 O -0.55 -10.34 16.54 -4.06 -0.07 -10.41 16 21 C -0.06 -0.59 7.17 40.41 0.29 -0.30 16 22 C 0.03 0.34 11.87 84.18 1.00 1.34 16 23 N -0.30 -5.00 12.35 -57.50 -0.71 -5.71 16 24 N -0.06 -0.80 13.35 37.02 0.49 -0.30 16 25 N -0.35 -1.98 6.98 -48.51 -0.34 -2.32 16 26 H 0.47 -1.59 8.32 -219.90 -1.83 -3.42 16 27 C -0.15 -1.24 7.45 31.18 0.23 -1.01 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 30 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.42 5.64 8.47 -92.71 -0.79 4.85 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.06 1.12 7.85 -2.39 -0.02 1.10 16 34 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.10 0.55 8.10 -2.39 -0.02 0.53 16 37 H 0.10 1.03 7.50 -2.39 -0.02 1.01 16 38 H 0.41 -1.13 7.97 -92.71 -0.74 -1.87 16 39 H 0.22 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.09 0.98 7.90 -2.39 -0.02 0.96 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -87.41 373.81 -1.37 -88.78 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.24 Total: 2.18 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.30 Total: -4.78 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -5.17 Total: -85.98 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.12 Total: -35.64 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -87.41 -1.37 -88.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755939185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.770 kcal (2) G-P(sol) polarization free energy of solvation -87.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds