Wall clock time and date at job start Tue Mar 31 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48495 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46914 * 299.99882 * 3 2 1 6 6 H 1.48504 * 109.47049 * 59.99405 * 3 2 1 7 7 C 1.38802 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99449 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00244 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47415 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00032 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.46964 * 120.59568 * 179.97438 * 13 11 10 15 15 C 1.53364 * 108.63631 * 235.24505 * 14 13 11 16 16 N 1.46968 * 108.63622 * 310.57458 * 15 14 13 17 17 C 1.34771 * 120.59633 * 235.20390 * 16 15 14 18 18 O 1.21280 * 120.00203 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00175 * 179.97438 * 17 16 15 20 20 N 1.46499 * 109.47571 * 179.97438 * 19 17 16 21 21 C 1.34430 * 126.82358 * 124.97698 * 20 19 17 22 22 N 1.30832 * 108.07308 * 179.79414 * 21 20 19 23 23 C 1.33234 * 109.83313 * 0.40801 * 22 21 20 24 24 N 1.30720 * 108.94479 * 359.58957 * 23 22 21 25 25 C 1.46969 * 118.80636 * 55.47821 * 16 15 14 26 26 C 1.46969 * 120.59141 * 0.02562 * 13 11 10 27 27 H 0.96996 * 120.00382 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47063 * 59.99745 * 10 9 7 29 29 H 1.08999 * 109.46931 * 300.00341 * 10 9 7 30 30 H 1.09003 * 109.60754 * 115.50163 * 14 13 11 31 31 H 1.09003 * 109.60726 * 354.99334 * 14 13 11 32 32 H 1.08994 * 109.61431 * 190.83107 * 15 14 13 33 33 H 1.08996 * 109.75421 * 70.40398 * 15 14 13 34 34 H 1.09009 * 109.47229 * 59.99856 * 19 17 16 35 35 H 1.09002 * 109.47318 * 300.00239 * 19 17 16 36 36 H 1.07997 * 125.95719 * 0.08180 * 21 20 19 37 37 H 1.08002 * 125.53021 * 179.85853 * 23 22 21 38 38 H 1.08997 * 109.61480 * 64.27183 * 25 16 15 39 39 H 1.09002 * 109.60516 * 184.77349 * 25 16 15 40 40 H 1.08996 * 109.60927 * 244.49603 * 26 13 11 41 41 H 1.08999 * 109.61279 * 5.01135 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3431 -7.7247 0.0034 15 6 2.9535 -8.4672 1.1985 16 7 4.4056 -8.2405 1.2005 17 6 5.2623 -9.2808 1.2029 18 8 4.8371 -10.4166 1.2039 19 6 6.7488 -9.0329 1.2043 20 7 7.4578 -10.3149 1.2074 21 6 8.3887 -10.7229 0.3276 22 7 8.7801 -11.9213 0.6773 23 6 8.1184 -12.3134 1.7652 24 7 7.2993 -11.3621 2.1296 25 6 4.9066 -6.8588 1.2060 26 6 4.2962 -6.1163 0.0059 27 1 -0.4850 0.8400 -0.0004 28 1 3.1238 -3.7310 0.8925 29 1 3.1252 -3.7318 -0.8874 30 1 2.6351 -8.2198 -0.9227 31 1 1.2567 -7.7198 0.0918 32 1 2.7501 -9.5343 1.1090 33 1 2.5230 -8.0894 2.1259 34 1 7.0216 -8.4650 2.0939 35 1 7.0237 -8.4674 0.3139 36 1 8.7533 -10.1579 -0.5175 37 1 8.2421 -13.2616 2.2674 38 1 4.6116 -6.3663 2.1325 39 1 5.9933 -6.8635 1.1214 40 1 4.7276 -6.4966 -0.9200 41 1 4.4997 -5.0493 0.0960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757877065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:45 Heat of formation + Delta-G solvation = 49.209862 kcal Electronic energy + Delta-G solvation = -26262.545622 eV Core-core repulsion = 22306.982264 eV Total energy + Delta-G solvation = -3955.563358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.43737 -40.77146 -39.40480 -37.14657 -34.59643 -34.20710 -32.51252 -32.21235 -31.53825 -29.58287 -29.02537 -27.17422 -25.57195 -24.21622 -23.33541 -22.35148 -22.23882 -20.48491 -18.93053 -18.15264 -17.87204 -17.41106 -16.74336 -16.35803 -16.13885 -15.87277 -15.67023 -15.45204 -15.17417 -14.88408 -14.57584 -14.27728 -14.15009 -13.95497 -13.78863 -13.41394 -13.04864 -12.92910 -12.61483 -12.23460 -12.05755 -11.98456 -11.90530 -11.63835 -11.14146 -11.10738 -10.83213 -10.70913 -10.38036 -10.12421 -9.92662 -9.88723 -9.61233 -9.50826 -9.15575 -8.58585 -8.32614 -6.60220 -6.30037 -4.01638 1.22451 1.71909 2.01265 2.34949 2.65230 2.79582 2.87265 3.15229 3.17980 3.24346 3.44611 3.66476 3.93637 3.95563 4.11137 4.27371 4.34907 4.37155 4.49327 4.64651 4.73406 4.83220 4.89028 4.97237 5.05486 5.08213 5.24379 5.34846 5.43066 5.56805 5.64219 5.72307 5.80810 5.93555 5.95392 6.07872 6.31782 6.35669 6.77280 7.31702 7.51104 7.57477 7.71912 8.26368 8.36221 9.15352 10.77362 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002071 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.945384 B =13518.863920 C =14418.690660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.511 6.511 13 N -0.623 5.623 14 C 0.101 3.899 15 C 0.100 3.900 16 N -0.609 5.609 17 C 0.504 3.496 18 O -0.510 6.510 19 C 0.112 3.888 20 N -0.372 5.372 21 C 0.256 3.744 22 N -0.544 5.544 23 C 0.193 3.807 24 N -0.290 5.290 25 C 0.087 3.913 26 C 0.094 3.906 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.220 0.780 37 H 0.217 0.783 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.808 -17.198 1.343 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.384 6.384 13 N -0.360 5.360 14 C -0.023 4.023 15 C -0.022 4.022 16 N -0.345 5.345 17 C 0.289 3.711 18 O -0.384 6.384 19 C -0.015 4.015 20 N -0.163 5.163 21 C -0.041 4.041 22 N -0.271 5.271 23 C -0.110 4.110 24 N -0.117 5.117 25 C -0.036 4.036 26 C -0.030 4.030 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.236 0.764 37 H 0.233 0.767 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.343 -18.181 1.804 23.859 hybrid contribution 2.027 1.650 -0.180 2.620 sum 17.370 -16.532 1.625 24.035 Atomic orbital electron populations 1.70021 1.05968 1.27464 1.46675 1.25006 0.95039 0.99094 0.94473 0.86110 0.79522 0.81841 0.77968 1.19612 1.20537 1.20542 1.22876 0.94876 0.91536 1.59150 0.90853 1.85483 1.04731 0.96402 1.96699 1.23556 1.06715 0.95243 1.04698 1.20408 0.86220 0.86165 0.74815 1.90711 1.15134 1.85080 1.47478 1.48059 1.06019 1.05837 1.76071 1.21906 1.01495 0.81325 0.97532 1.22078 0.78415 1.02508 0.99245 1.48041 1.06957 1.05869 1.73598 1.20403 0.88071 0.85246 0.77381 1.90807 1.78238 1.21459 1.47864 1.21648 0.90616 0.82485 1.06743 1.50018 1.30732 1.14047 1.21547 1.26107 0.89551 0.92754 0.95697 1.70536 1.29536 1.11209 1.15793 1.26044 0.91811 0.99749 0.93361 1.78208 1.22695 0.97003 1.13769 1.22387 0.99257 0.81644 1.00354 1.22158 0.80940 1.02207 0.97731 0.92151 0.89175 0.89170 0.91293 0.87424 0.87842 0.90434 0.86160 0.85005 0.76383 0.76673 0.89640 0.88781 0.90778 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.30 13.22 55.49 0.73 -24.57 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.48 9.50 30.94 0.29 -14.19 16 8 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.74 4.50 36.00 0.16 -2.58 16 11 C 0.54 9.06 7.72 -10.99 -0.08 8.97 16 12 O -0.51 -10.81 15.27 5.56 0.08 -10.73 16 13 N -0.62 -7.34 2.95 -172.25 -0.51 -7.85 16 14 C 0.10 1.08 6.59 -3.60 -0.02 1.05 16 15 C 0.10 0.95 6.59 -3.60 -0.02 0.92 16 16 N -0.61 -4.76 2.94 -172.25 -0.51 -5.27 16 17 C 0.50 4.48 7.73 -10.99 -0.08 4.40 16 18 O -0.51 -6.97 15.15 5.56 0.08 -6.89 16 19 C 0.11 0.56 5.37 -5.19 -0.03 0.53 16 20 N -0.37 -3.09 3.41 -63.81 -0.22 -3.31 16 21 C 0.26 1.80 12.63 -90.65 -1.14 0.65 16 22 N -0.54 -5.30 11.19 -15.83 -0.18 -5.48 16 23 C 0.19 1.88 13.03 -91.81 -1.20 0.68 16 24 N -0.29 -3.29 11.82 29.29 0.35 -2.95 16 25 C 0.09 0.46 6.53 -3.39 -0.02 0.44 16 26 C 0.09 0.69 6.52 -3.39 -0.02 0.67 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.09 1.45 7.72 -51.92 -0.40 1.05 16 29 H 0.09 1.48 7.91 -51.92 -0.41 1.07 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.33 6.99 -51.93 -0.36 0.96 16 32 H 0.10 1.05 6.99 -51.93 -0.36 0.69 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.12 0.38 7.90 -51.92 -0.41 -0.04 16 35 H 0.13 0.09 7.68 -51.93 -0.40 -0.31 16 36 H 0.22 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.22 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.13 5.91 -51.93 -0.31 -0.18 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.74 5.91 -51.93 -0.31 0.44 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -40.39 361.41 -9.26 -49.65 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.04 Total: -3.26 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.27 Total: 3.46 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.33 Total: -49.43 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.39 -9.26 -49.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757877065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.864 kcal (2) G-P(sol) polarization free energy of solvation -40.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds