Wall clock time and date at job start Tue Mar 31 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48495 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46914 * 299.99882 * 3 2 1 6 6 H 1.48504 * 109.47049 * 59.99405 * 3 2 1 7 7 C 1.38802 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99449 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00244 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47415 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00032 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.46964 * 120.59568 * 179.97438 * 13 11 10 15 15 C 1.53364 * 108.63631 * 235.24505 * 14 13 11 16 16 N 1.46968 * 108.63622 * 310.57458 * 15 14 13 17 17 C 1.34771 * 120.59633 * 235.20390 * 16 15 14 18 18 O 1.21280 * 120.00203 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00175 * 179.97438 * 17 16 15 20 20 N 1.46499 * 109.47571 * 179.97438 * 19 17 16 21 21 C 1.34430 * 126.82358 * 124.97698 * 20 19 17 22 22 N 1.30832 * 108.07308 * 179.79414 * 21 20 19 23 23 C 1.33234 * 109.83313 * 0.40801 * 22 21 20 24 24 N 1.30720 * 108.94479 * 359.58957 * 23 22 21 25 25 C 1.46969 * 118.80636 * 55.47821 * 16 15 14 26 26 C 1.46969 * 120.59141 * 0.02562 * 13 11 10 27 27 H 0.96996 * 120.00382 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47063 * 59.99745 * 10 9 7 29 29 H 1.08999 * 109.46931 * 300.00341 * 10 9 7 30 30 H 1.09003 * 109.60754 * 115.50163 * 14 13 11 31 31 H 1.09003 * 109.60726 * 354.99334 * 14 13 11 32 32 H 1.08994 * 109.61431 * 190.83107 * 15 14 13 33 33 H 1.08996 * 109.75421 * 70.40398 * 15 14 13 34 34 H 1.09009 * 109.47229 * 59.99856 * 19 17 16 35 35 H 1.09002 * 109.47318 * 300.00239 * 19 17 16 36 36 H 1.07997 * 125.95719 * 0.08180 * 21 20 19 37 37 H 1.08002 * 125.53021 * 179.85853 * 23 22 21 38 38 H 1.08997 * 109.61480 * 64.27183 * 25 16 15 39 39 H 1.09002 * 109.60516 * 184.77349 * 25 16 15 40 40 H 1.08996 * 109.60927 * 244.49603 * 26 13 11 41 41 H 1.08999 * 109.61279 * 5.01135 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3431 -7.7247 0.0034 15 6 2.9535 -8.4672 1.1985 16 7 4.4056 -8.2405 1.2005 17 6 5.2623 -9.2808 1.2029 18 8 4.8371 -10.4166 1.2039 19 6 6.7488 -9.0329 1.2043 20 7 7.4578 -10.3149 1.2074 21 6 8.3887 -10.7229 0.3276 22 7 8.7801 -11.9213 0.6773 23 6 8.1184 -12.3134 1.7652 24 7 7.2993 -11.3621 2.1296 25 6 4.9066 -6.8588 1.2060 26 6 4.2962 -6.1163 0.0059 27 1 -0.4850 0.8400 -0.0004 28 1 3.1238 -3.7310 0.8925 29 1 3.1252 -3.7318 -0.8874 30 1 2.6351 -8.2198 -0.9227 31 1 1.2567 -7.7198 0.0918 32 1 2.7501 -9.5343 1.1090 33 1 2.5230 -8.0894 2.1259 34 1 7.0216 -8.4650 2.0939 35 1 7.0237 -8.4674 0.3139 36 1 8.7533 -10.1579 -0.5175 37 1 8.2421 -13.2616 2.2674 38 1 4.6116 -6.3663 2.1325 39 1 5.9933 -6.8635 1.1214 40 1 4.7276 -6.4966 -0.9200 41 1 4.4997 -5.0493 0.0960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757877065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:44 Heat of formation + Delta-G solvation = 20.670787 kcal Electronic energy + Delta-G solvation = -26263.783169 eV Core-core repulsion = 22306.982264 eV Total energy + Delta-G solvation = -3956.800905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.99626 -41.57781 -40.44975 -38.10422 -35.29743 -34.99676 -34.55678 -33.00777 -32.14175 -30.78622 -29.67770 -28.02298 -27.56162 -24.91479 -24.08476 -22.95984 -22.87420 -21.34089 -20.07159 -19.39714 -18.66198 -18.31521 -17.70422 -17.15957 -16.89929 -16.85343 -16.73430 -16.72660 -16.13166 -15.84135 -15.71635 -15.12426 -15.00415 -14.80084 -14.65196 -14.49318 -14.45037 -13.65904 -13.51836 -13.44049 -13.13895 -12.90504 -12.77102 -12.67583 -12.64580 -12.55586 -12.41430 -11.67229 -11.36068 -11.14010 -10.99750 -10.92137 -10.76152 -10.54697 -10.38176 -10.20970 -9.46143 -8.64826 -8.32472 -6.10345 0.68690 1.22768 1.31078 1.39103 1.43748 1.47875 1.58109 1.58358 1.80131 2.05383 2.14191 2.29394 3.02455 3.17810 3.25795 3.56324 3.60817 3.66249 3.73578 3.93421 4.04699 4.07872 4.11323 4.17618 4.25029 4.35484 4.39781 4.44589 4.49179 4.61553 4.64867 4.75279 4.95347 5.22739 5.28248 5.43377 5.45168 5.48409 5.88295 6.14393 6.22543 6.28721 6.95852 7.09400 7.11440 7.14774 8.76785 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002071 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.945384 B =13518.863920 C =14418.690660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 0.998 3.002 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.089 0.911 9 S -0.161 6.161 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.609 5.609 14 C 0.106 3.894 15 C 0.108 3.892 16 N -0.606 5.606 17 C 0.501 3.499 18 O -0.567 6.567 19 C 0.110 3.890 20 N -0.378 5.378 21 C 0.266 3.734 22 N -0.579 5.579 23 C 0.184 3.816 24 N -0.339 5.339 25 C 0.088 3.912 26 C 0.082 3.918 27 H 0.269 0.731 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.188 0.812 36 H 0.269 0.731 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.156 -16.094 0.693 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.820 3.180 4 H -0.174 1.174 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.687 4.687 8 H 0.107 0.893 9 S 0.066 5.934 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.445 6.445 13 N -0.344 5.344 14 C -0.018 4.018 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.289 3.711 18 O -0.444 6.444 19 C -0.015 4.015 20 N -0.169 5.169 21 C -0.030 4.030 22 N -0.306 5.306 23 C -0.118 4.118 24 N -0.166 5.166 25 C -0.034 4.034 26 C -0.040 4.040 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.205 0.795 36 H 0.285 0.715 37 H 0.248 0.752 38 H 0.101 0.899 39 H 0.166 0.834 40 H 0.120 0.880 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.762 -17.074 1.159 26.142 hybrid contribution 0.730 1.181 -0.004 1.389 sum 20.493 -15.893 1.156 25.959 Atomic orbital electron populations 1.70200 1.08079 1.28445 1.48296 1.26145 0.95920 1.03425 0.93923 0.84910 0.78916 0.76367 0.77791 1.17417 1.20341 1.20329 1.23230 0.95460 0.91639 1.58358 0.89339 1.85748 1.11001 0.99622 1.97039 1.23365 1.03327 0.93609 1.06961 1.20256 0.85931 0.86775 0.74837 1.90698 1.17589 1.85748 1.50502 1.48037 1.07746 1.04894 1.73746 1.21883 1.00339 0.80821 0.98713 1.21802 0.80125 1.01482 0.98145 1.48101 1.05887 1.07090 1.72889 1.21160 0.89812 0.84336 0.75827 1.90796 1.79444 1.23778 1.50426 1.22103 0.87004 0.81773 1.10606 1.50175 1.31194 1.14395 1.21162 1.27057 0.88153 0.92065 0.95734 1.70531 1.30784 1.12991 1.16322 1.26454 0.91460 1.00308 0.93612 1.78111 1.24007 0.98488 1.15950 1.22640 1.02143 0.79434 0.99187 1.22623 0.77697 1.03503 1.00169 0.92159 0.86566 0.86810 0.89963 0.89877 0.88940 0.91210 0.83627 0.79486 0.71539 0.75185 0.89867 0.83433 0.88002 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.61 13.22 21.65 0.29 -54.32 16 2 C 0.01 0.56 5.49 84.86 0.47 1.03 16 3 Si 1.00 41.42 29.55 68.60 2.03 43.44 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.54 -28.86 9.50 67.96 0.65 -28.22 16 8 H 0.09 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.16 -8.46 20.57 -56.49 -1.16 -9.63 16 10 C -0.12 -4.20 4.50 71.23 0.32 -3.88 16 11 C 0.53 17.74 7.72 87.65 0.68 18.42 16 12 O -0.57 -24.94 15.27 -3.02 -0.05 -24.99 16 13 N -0.61 -13.14 2.95 -817.28 -2.41 -15.54 16 14 C 0.11 2.19 6.59 86.41 0.57 2.76 16 15 C 0.11 1.98 6.59 86.41 0.57 2.55 16 16 N -0.61 -7.63 2.94 -817.28 -2.40 -10.03 16 17 C 0.50 7.50 7.73 87.66 0.68 8.18 16 18 O -0.57 -15.14 15.15 -3.03 -0.05 -15.19 16 19 C 0.11 0.55 5.37 85.63 0.46 1.01 16 20 N -0.38 -5.13 3.41 -355.79 -1.21 -6.34 16 21 C 0.27 2.81 12.63 180.36 2.28 5.09 16 22 N -0.58 -10.34 11.19 -204.00 -2.28 -12.62 16 23 C 0.18 3.51 13.03 180.77 2.36 5.86 16 24 N -0.34 -7.39 11.82 -61.24 -0.72 -8.12 16 25 C 0.09 0.48 6.53 86.54 0.57 1.04 16 26 C 0.08 0.81 6.52 86.54 0.56 1.38 16 27 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.12 3.40 7.72 -2.39 -0.02 3.38 16 29 H 0.11 3.40 7.91 -2.40 -0.02 3.38 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.17 6.99 -2.39 -0.02 2.15 16 32 H 0.09 1.94 6.99 -2.39 -0.02 1.92 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.15 0.06 7.90 -2.38 -0.02 0.04 16 35 H 0.19 -1.20 7.68 -2.39 -0.02 -1.22 16 36 H 0.27 -0.44 8.06 -2.91 -0.02 -0.46 16 37 H 0.23 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.15 -0.72 5.91 -2.39 -0.01 -0.74 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.12 1.00 5.91 -2.39 -0.01 0.98 16 Total: -1.00 -96.48 361.41 3.24 -93.24 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.07 Total: 4.86 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 10.15 Total: 15.23 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -8.74 Total: -106.97 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.09 Total: -40.18 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -96.48 3.24 -93.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757877065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.909 kcal (2) G-P(sol) polarization free energy of solvation -96.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds