Wall clock time and date at job start Tue Mar 31 2020 22:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00567 * 2 1 4 4 H 1.48500 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46960 * 300.00079 * 3 2 1 6 6 H 1.48508 * 109.46810 * 59.99769 * 3 2 1 7 7 C 1.38806 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00463 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99499 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99807 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47080 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00011 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99993 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.63015 * 180.02562 * 13 11 10 15 15 C 1.53193 * 108.77464 * 233.62675 * 14 13 11 16 16 C 1.53048 * 109.31279 * 305.36464 * 15 14 13 17 17 N 1.46499 * 109.45751 * 181.38655 * 16 15 14 18 18 C 1.34775 * 119.99889 * 155.00386 * 17 16 15 19 19 O 1.21622 * 119.99689 * 359.97438 * 18 17 16 20 20 C 1.47230 * 120.00375 * 179.97438 * 18 17 16 21 21 C 1.37004 * 127.19394 * 179.97438 * 20 18 17 22 22 N 1.33315 * 106.37501 * 179.97438 * 21 20 18 23 23 N 1.28514 * 109.44158 * 359.97438 * 22 21 20 24 24 N 1.28724 * 110.63693 * 0.02562 * 23 22 21 25 25 H 0.97000 * 126.03573 * 179.97438 * 24 23 22 26 26 C 1.53036 * 109.53506 * 61.36371 * 16 15 14 27 27 C 1.46928 * 120.63150 * 0.02562 * 13 11 10 28 28 H 0.96999 * 119.99746 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47060 * 59.99969 * 10 9 7 30 30 H 1.09000 * 109.47340 * 299.99674 * 10 9 7 31 31 H 1.09001 * 109.58832 * 113.84055 * 14 13 11 32 32 H 1.08999 * 109.70530 * 353.48491 * 14 13 11 33 33 H 1.09002 * 109.49727 * 185.41639 * 15 14 13 34 34 H 1.08998 * 109.52352 * 65.33578 * 15 14 13 35 35 H 1.09004 * 109.45659 * 301.35794 * 16 15 14 36 36 H 0.97000 * 120.00015 * 335.00063 * 17 16 15 37 37 H 1.08000 * 126.80864 * 359.94766 * 21 20 18 38 38 H 1.08997 * 109.50036 * 58.58962 * 26 16 15 39 39 H 1.09002 * 109.49486 * 178.67900 * 26 16 15 40 40 H 1.09002 * 109.58768 * 246.16209 * 27 13 11 41 41 H 1.09005 * 109.58460 * 6.44796 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0021 13 7 2.8438 -6.3432 0.0018 14 6 2.3436 -7.7247 0.0019 15 6 2.9840 -8.4809 1.1702 16 6 4.5070 -8.3637 1.0748 17 7 5.1238 -9.1135 2.1720 18 6 6.3799 -9.5848 2.0436 19 8 7.0012 -9.3880 1.0168 20 6 7.0000 -10.3378 3.1464 21 6 8.2578 -10.8802 3.1745 22 7 8.3882 -11.4654 4.3652 23 7 7.3054 -11.3090 5.0396 24 7 6.4398 -10.6417 4.3596 25 1 5.5484 -10.3973 4.6539 26 6 4.9141 -6.8916 1.1711 27 6 4.2956 -6.1175 0.0024 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1243 -3.7315 -0.8895 31 1 2.6100 -8.2098 -0.9372 32 1 1.2598 -7.7232 0.1178 33 1 2.6964 -9.5313 1.1250 34 1 2.6443 -8.0508 2.1124 35 1 4.8437 -8.7719 0.1218 36 1 4.6281 -9.2707 2.9908 37 1 8.9968 -10.8416 2.3879 38 1 4.5562 -6.4760 2.1130 39 1 6.0002 -6.8109 1.1267 40 1 4.7209 -6.4717 -0.9366 41 1 4.4998 -5.0530 0.1176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758286370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:06 Heat of formation + Delta-G solvation = 25.736386 kcal Electronic energy + Delta-G solvation = -26024.594400 eV Core-core repulsion = 22068.013155 eV Total energy + Delta-G solvation = -3956.581245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.92746 -40.66290 -39.62267 -37.46465 -35.18713 -34.08642 -32.47694 -32.40841 -31.85686 -31.07919 -29.02550 -25.90865 -25.49702 -24.32460 -23.62920 -23.30793 -21.66294 -21.32347 -20.00255 -19.10458 -17.83971 -17.32777 -17.04079 -16.94263 -16.45099 -15.76799 -15.50966 -15.30482 -15.01294 -14.84738 -14.80866 -14.42332 -14.15540 -13.95655 -13.42003 -13.08101 -12.80249 -12.77792 -12.49508 -12.35053 -11.94597 -11.85971 -11.61324 -11.49774 -11.35285 -11.10855 -11.07671 -11.05300 -10.79895 -10.76951 -10.15203 -9.85704 -9.74642 -9.44950 -9.11946 -8.69565 -8.28132 -6.55748 -6.26440 -3.97387 0.27871 1.72673 1.80801 2.27150 2.46792 2.82104 2.95560 3.18251 3.22140 3.27650 3.51799 3.70324 4.00892 4.15402 4.22889 4.35056 4.40090 4.56568 4.60958 4.70959 4.82062 4.95825 5.05978 5.09022 5.17468 5.33391 5.40296 5.43735 5.47960 5.56621 5.62660 5.70901 5.76549 5.80512 5.86952 5.95802 6.04756 6.49731 6.66113 7.35903 7.41860 7.55491 7.66979 8.30738 8.44749 9.19203 10.80994 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002034 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.240644 B =13764.256223 C =14514.256325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.623 5.623 14 C 0.117 3.883 15 C -0.142 4.142 16 C 0.147 3.853 17 N -0.720 5.720 18 C 0.597 3.403 19 O -0.508 6.508 20 C -0.068 4.068 21 C 0.036 3.964 22 N -0.269 5.269 23 N -0.044 5.044 24 N -0.375 5.375 25 H 0.451 0.549 26 C -0.146 4.146 27 C 0.112 3.888 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.396 0.604 37 H 0.206 0.794 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.425 -22.080 5.626 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.390 6.390 13 N -0.359 5.359 14 C -0.006 4.006 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.371 5.371 18 C 0.380 3.620 19 O -0.381 6.381 20 C -0.203 4.203 21 C -0.124 4.124 22 N -0.134 5.134 23 N -0.026 5.026 24 N -0.102 5.102 25 H 0.298 0.702 26 C -0.185 4.185 27 C -0.012 4.012 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.229 0.771 37 H 0.223 0.777 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.344 -22.851 6.116 26.235 hybrid contribution 0.997 1.901 -0.270 2.163 sum 12.340 -20.950 5.846 25.007 Atomic orbital electron populations 1.70022 1.05954 1.27390 1.46859 1.24999 0.95037 0.99064 0.94504 0.86118 0.79593 0.81853 0.77938 1.19598 1.20527 1.20560 1.22892 0.94910 0.91564 1.58949 0.90870 1.85406 1.04937 0.96429 1.96706 1.23563 1.06547 0.95338 1.04756 1.20357 0.86172 0.86221 0.74788 1.90696 1.15171 1.85213 1.47877 1.48154 1.06380 1.05690 1.75720 1.21418 1.00992 0.81226 0.96973 1.22240 0.93328 1.01567 1.00926 1.21127 0.92623 0.91467 0.90465 1.46015 1.14699 1.56450 1.19937 1.16746 0.81563 0.78419 0.85270 1.90904 1.62024 1.57349 1.27781 1.22409 0.97590 1.10453 0.89816 1.23977 0.95162 0.96389 0.96832 1.75043 1.14946 1.19141 1.04242 1.78272 0.94969 1.09975 1.19370 1.45628 1.16495 1.37121 1.10958 0.70235 1.22347 1.01795 0.94378 1.00029 1.21678 0.79778 1.01777 0.98000 0.92206 0.89272 0.89159 0.91357 0.88143 0.90013 0.90591 0.88418 0.77080 0.77736 0.90872 0.89935 0.90963 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.89 9.50 30.94 0.29 -14.60 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.92 4.50 36.01 0.16 -2.76 16 11 C 0.54 9.45 7.72 -10.98 -0.08 9.37 16 12 O -0.52 -11.06 15.28 5.55 0.08 -10.98 16 13 N -0.62 -7.69 2.97 -172.75 -0.51 -8.20 16 14 C 0.12 1.14 6.43 -3.71 -0.02 1.11 16 15 C -0.14 -0.91 5.55 -26.61 -0.15 -1.05 16 16 C 0.15 0.96 2.41 -67.89 -0.16 0.80 16 17 N -0.72 -3.53 5.07 -54.90 -0.28 -3.81 16 18 C 0.60 4.24 7.77 -12.61 -0.10 4.14 16 19 O -0.51 -5.35 16.59 5.26 0.09 -5.27 16 20 C -0.07 -0.43 7.17 -82.33 -0.59 -1.02 16 21 C 0.04 0.27 11.87 -17.36 -0.21 0.06 16 22 N -0.27 -2.48 12.35 30.47 0.38 -2.10 16 23 N -0.04 -0.35 13.35 60.35 0.81 0.46 16 24 N -0.37 -1.77 6.98 33.31 0.23 -1.53 16 25 H 0.45 0.32 8.32 -190.32 -1.58 -1.26 16 26 C -0.15 -1.14 5.65 -26.60 -0.15 -1.29 16 27 C 0.11 1.07 6.34 -3.70 -0.02 1.05 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.09 1.58 7.69 -51.92 -0.40 1.18 16 30 H 0.09 1.62 7.94 -51.92 -0.41 1.21 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.16 7.01 -51.93 -0.36 0.80 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.75 7.58 -51.93 -0.39 0.35 16 36 H 0.40 0.80 7.87 -40.82 -0.32 0.47 16 37 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.97 5.93 -51.93 -0.31 0.66 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -37.34 363.01 -7.65 -44.99 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.28 Total: -3.99 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.13 Total: -2.24 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 1.36 Total: -40.17 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.34 -7.65 -44.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758286370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.723 kcal (2) G-P(sol) polarization free energy of solvation -37.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds