Wall clock time and date at job start Tue Mar 31 2020 22:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00567 * 2 1 4 4 H 1.48500 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46960 * 300.00079 * 3 2 1 6 6 H 1.48508 * 109.46810 * 59.99769 * 3 2 1 7 7 C 1.38806 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00463 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99499 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99807 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47080 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00011 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99993 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.63015 * 180.02562 * 13 11 10 15 15 C 1.53193 * 108.77464 * 233.62675 * 14 13 11 16 16 C 1.53048 * 109.31279 * 305.36464 * 15 14 13 17 17 N 1.46499 * 109.45751 * 181.38655 * 16 15 14 18 18 C 1.34775 * 119.99889 * 155.00386 * 17 16 15 19 19 O 1.21622 * 119.99689 * 359.97438 * 18 17 16 20 20 C 1.47230 * 120.00375 * 179.97438 * 18 17 16 21 21 C 1.37004 * 127.19394 * 179.97438 * 20 18 17 22 22 N 1.33315 * 106.37501 * 179.97438 * 21 20 18 23 23 N 1.28514 * 109.44158 * 359.97438 * 22 21 20 24 24 N 1.28724 * 110.63693 * 0.02562 * 23 22 21 25 25 H 0.97000 * 126.03573 * 179.97438 * 24 23 22 26 26 C 1.53036 * 109.53506 * 61.36371 * 16 15 14 27 27 C 1.46928 * 120.63150 * 0.02562 * 13 11 10 28 28 H 0.96999 * 119.99746 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47060 * 59.99969 * 10 9 7 30 30 H 1.09000 * 109.47340 * 299.99674 * 10 9 7 31 31 H 1.09001 * 109.58832 * 113.84055 * 14 13 11 32 32 H 1.08999 * 109.70530 * 353.48491 * 14 13 11 33 33 H 1.09002 * 109.49727 * 185.41639 * 15 14 13 34 34 H 1.08998 * 109.52352 * 65.33578 * 15 14 13 35 35 H 1.09004 * 109.45659 * 301.35794 * 16 15 14 36 36 H 0.97000 * 120.00015 * 335.00063 * 17 16 15 37 37 H 1.08000 * 126.80864 * 359.94766 * 21 20 18 38 38 H 1.08997 * 109.50036 * 58.58962 * 26 16 15 39 39 H 1.09002 * 109.49486 * 178.67900 * 26 16 15 40 40 H 1.09002 * 109.58768 * 246.16209 * 27 13 11 41 41 H 1.09005 * 109.58460 * 6.44796 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0021 13 7 2.8438 -6.3432 0.0018 14 6 2.3436 -7.7247 0.0019 15 6 2.9840 -8.4809 1.1702 16 6 4.5070 -8.3637 1.0748 17 7 5.1238 -9.1135 2.1720 18 6 6.3799 -9.5848 2.0436 19 8 7.0012 -9.3880 1.0168 20 6 7.0000 -10.3378 3.1464 21 6 8.2578 -10.8802 3.1745 22 7 8.3882 -11.4654 4.3652 23 7 7.3054 -11.3090 5.0396 24 7 6.4398 -10.6417 4.3596 25 1 5.5484 -10.3973 4.6539 26 6 4.9141 -6.8916 1.1711 27 6 4.2956 -6.1175 0.0024 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1243 -3.7315 -0.8895 31 1 2.6100 -8.2098 -0.9372 32 1 1.2598 -7.7232 0.1178 33 1 2.6964 -9.5313 1.1250 34 1 2.6443 -8.0508 2.1124 35 1 4.8437 -8.7719 0.1218 36 1 4.6281 -9.2707 2.9908 37 1 8.9968 -10.8416 2.3879 38 1 4.5562 -6.4760 2.1130 39 1 6.0002 -6.8109 1.1267 40 1 4.7209 -6.4717 -0.9366 41 1 4.4998 -5.0530 0.1176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758286370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:05 Heat of formation + Delta-G solvation = -3.656973 kcal Electronic energy + Delta-G solvation = -26025.868992 eV Core-core repulsion = 22068.013155 eV Total energy + Delta-G solvation = -3957.855836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.45534 -41.45536 -40.58235 -38.44207 -35.97312 -34.68059 -34.58840 -33.16238 -32.58823 -31.80347 -30.34231 -27.69415 -26.56803 -24.99176 -24.37412 -23.90697 -22.35545 -21.94751 -20.77944 -20.08552 -19.51323 -18.34516 -17.72601 -17.49136 -17.28468 -16.95636 -16.87244 -16.65416 -15.96055 -15.86221 -15.59405 -15.32458 -15.14292 -14.96559 -14.51316 -14.40246 -14.20785 -13.46130 -13.37498 -13.34551 -13.15896 -13.05893 -12.92133 -12.60475 -12.42255 -12.29796 -12.13551 -11.87727 -11.74400 -11.67845 -11.42481 -11.16412 -10.89985 -10.71442 -10.30866 -10.22367 -9.74440 -8.67128 -8.35406 -6.13094 -0.23862 1.15479 1.25790 1.38293 1.40807 1.45893 1.55530 1.56895 1.81100 1.92119 2.09078 2.26793 2.98962 3.22676 3.25071 3.49611 3.62291 3.72004 3.78694 3.87722 4.01084 4.04369 4.06196 4.25340 4.28524 4.37925 4.43864 4.52560 4.70980 4.79851 4.83875 4.90796 4.93217 5.02297 5.12614 5.28170 5.41867 5.56069 5.63323 6.19338 6.21305 6.25987 6.86276 7.06344 7.12927 7.13604 8.73901 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002034 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.240644 B =13764.256223 C =14514.256325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.126 4.126 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.607 5.607 14 C 0.110 3.890 15 C -0.129 4.129 16 C 0.152 3.848 17 N -0.704 5.704 18 C 0.604 3.396 19 O -0.542 6.542 20 C -0.062 4.062 21 C 0.027 3.973 22 N -0.299 5.299 23 N -0.060 5.060 24 N -0.349 5.349 25 H 0.468 0.532 26 C -0.139 4.139 27 C 0.105 3.895 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.218 0.782 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.313 -22.785 6.051 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.277 4.277 11 C 0.323 3.677 12 O -0.443 6.443 13 N -0.341 5.341 14 C -0.012 4.012 15 C -0.167 4.167 16 C 0.048 3.952 17 N -0.355 5.355 18 C 0.388 3.612 19 O -0.417 6.417 20 C -0.198 4.198 21 C -0.133 4.133 22 N -0.163 5.163 23 N -0.042 5.042 24 N -0.080 5.080 25 H 0.319 0.681 26 C -0.179 4.179 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.249 0.751 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.244 -23.606 6.589 27.859 hybrid contribution 0.444 1.989 -0.419 2.081 sum 13.688 -21.617 6.170 26.320 Atomic orbital electron populations 1.70182 1.07926 1.28521 1.48071 1.26113 0.95965 1.03276 0.93809 0.84926 0.78649 0.76445 0.78062 1.18027 1.20002 1.19950 1.23218 0.95301 0.91979 1.58698 0.89962 1.85562 1.10577 0.99222 1.97012 1.23391 1.03387 0.94646 1.06286 1.20058 0.85968 0.86580 0.75080 1.90682 1.17149 1.85737 1.50683 1.48120 1.07037 1.05661 1.73323 1.21665 1.00191 0.79831 0.99549 1.22127 0.92737 1.02565 0.99283 1.20985 0.92600 0.90746 0.90842 1.45793 1.14052 1.55363 1.20289 1.16707 0.81736 0.78032 0.84735 1.90898 1.62985 1.58746 1.29086 1.22231 0.97312 1.10235 0.89980 1.24296 0.96049 0.96255 0.96729 1.75026 1.15791 1.20382 1.05138 1.78212 0.95364 1.10848 1.19806 1.45587 1.16824 1.35537 1.10026 0.68096 1.22269 1.01663 0.94915 0.99006 1.21920 0.77870 1.02115 0.99870 0.92009 0.87489 0.87615 0.89429 0.90207 0.87305 0.90510 0.88730 0.75083 0.76576 0.90930 0.89703 0.89174 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.19 13.22 21.65 0.29 -54.91 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.49 9.50 67.96 0.65 -29.85 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -4.81 4.50 71.24 0.32 -4.49 16 11 C 0.54 18.74 7.72 87.66 0.68 19.41 16 12 O -0.56 -24.85 15.28 -3.05 -0.05 -24.89 16 13 N -0.61 -14.00 2.97 -818.84 -2.43 -16.43 16 14 C 0.11 1.91 6.43 86.36 0.56 2.47 16 15 C -0.13 -1.23 5.55 30.67 0.17 -1.06 16 16 C 0.15 1.49 2.41 45.02 0.11 1.60 16 17 N -0.70 -4.51 5.07 -445.86 -2.26 -6.78 16 18 C 0.60 6.99 7.77 86.61 0.67 7.66 16 19 O -0.54 -10.27 16.59 -4.10 -0.07 -10.34 16 20 C -0.06 -0.65 7.17 40.40 0.29 -0.36 16 21 C 0.03 0.36 11.87 84.18 1.00 1.36 16 22 N -0.30 -5.24 12.35 -57.50 -0.71 -5.95 16 23 N -0.06 -0.88 13.35 37.02 0.49 -0.38 16 24 N -0.35 -2.48 6.98 -48.52 -0.34 -2.82 16 25 H 0.47 -0.74 8.32 -219.89 -1.83 -2.57 16 26 C -0.14 -1.77 5.65 30.68 0.17 -1.60 16 27 C 0.11 1.75 6.34 86.37 0.55 2.30 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.11 3.68 7.69 -2.40 -0.02 3.66 16 30 H 0.11 3.69 7.94 -2.40 -0.02 3.67 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.79 7.01 -2.39 -0.02 1.77 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.11 7.58 -2.38 -0.02 1.09 16 36 H 0.41 0.04 7.87 -92.71 -0.73 -0.69 16 37 H 0.22 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.63 5.93 -2.38 -0.01 1.62 16 Total: -1.00 -84.18 363.01 -0.04 -84.22 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -1.46 Total: 4.00 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.63 Total: -1.35 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.96 Total: -87.26 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.11 Total: -35.23 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -84.18 -0.04 -84.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758286370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.565 kcal (2) G-P(sol) polarization free energy of solvation -84.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds