Wall clock time and date at job start Tue Mar 31 2020 22:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47016 * 125.64953 * 359.74753 * 13 11 10 15 15 C 1.54331 * 107.26920 * 178.90729 * 14 13 11 16 16 C 1.55151 * 102.94185 * 337.80724 * 15 14 13 17 17 H 1.09001 * 111.00674 * 277.42796 * 16 15 14 18 18 C 1.53003 * 111.00426 * 153.57644 * 16 15 14 19 19 N 1.46493 * 109.47126 * 174.99912 * 18 16 15 20 20 C 1.34781 * 120.00281 * 180.02562 * 19 18 16 21 21 O 1.21554 * 119.99299 * 359.97438 * 20 19 18 22 22 C 1.47863 * 120.00262 * 180.02562 * 20 19 18 23 23 N 1.34550 * 126.04840 * 359.68321 * 22 20 19 24 24 C 1.30874 * 107.26770 * 179.90059 * 23 22 20 25 25 N 1.34585 * 107.62584 * 0.35921 * 24 23 22 26 26 H 0.96994 * 125.74800 * 179.73071 * 25 24 23 27 27 N 1.28846 * 108.50268 * 359.77365 * 25 24 23 28 28 C 1.47426 * 125.64311 * 179.44245 * 13 11 10 29 29 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 1.09005 * 109.88553 * 298.32239 * 14 13 11 33 33 H 1.08999 * 109.88621 * 59.33259 * 14 13 11 34 34 H 1.09004 * 110.71657 * 96.16944 * 15 14 13 35 35 H 1.08998 * 110.71997 * 219.43877 * 15 14 13 36 36 H 1.08997 * 109.47212 * 295.00291 * 18 16 15 37 37 H 1.09003 * 109.46817 * 54.99759 * 18 16 15 38 38 H 0.97006 * 120.00270 * 0.02562 * 19 18 16 39 39 H 1.08002 * 126.18852 * 180.13972 * 24 23 22 40 40 H 1.08993 * 110.36867 * 323.00222 * 28 13 11 41 41 H 1.09007 * 110.36455 * 85.32433 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 5.2273 -5.7161 -0.0024 15 6 6.1962 -6.9168 -0.0367 16 6 7.4928 -6.3003 -0.6249 17 1 7.4453 -6.2551 -1.7129 18 6 8.7276 -7.0772 -0.1638 19 7 9.9177 -6.5432 -0.8307 20 6 11.1290 -7.0770 -0.5769 21 8 11.2340 -8.0012 0.2056 22 6 12.3302 -6.5376 -1.2496 23 7 12.3540 -5.5261 -2.1365 24 6 13.6008 -5.3526 -2.4946 25 7 14.3442 -6.2607 -1.8357 26 1 15.3054 -6.3672 -1.9095 27 7 13.5636 -6.9654 -1.0912 28 6 7.4688 -4.8792 -0.0142 29 1 -0.4850 0.8401 -0.0004 30 1 3.6439 -3.4322 -0.8874 31 1 3.6433 -3.4309 0.8926 32 1 4.6199 -5.7556 0.9019 33 1 4.5836 -5.7309 -0.8819 34 1 6.3725 -7.2989 0.9688 35 1 5.8132 -7.7029 -0.6875 36 1 8.8392 -6.9748 0.9156 37 1 8.6102 -8.1305 -0.4186 38 1 9.8339 -5.8054 -1.4549 39 1 13.9666 -4.6164 -3.1950 40 1 8.0427 -4.1899 -0.6335 41 1 7.8653 -4.8983 1.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758797078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:59 Heat of formation + Delta-G solvation = 20.254771 kcal Electronic energy + Delta-G solvation = -25517.675749 eV Core-core repulsion = 21560.856804 eV Total energy + Delta-G solvation = -3956.818945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.98255 -40.25233 -39.53903 -37.58158 -35.20464 -34.06075 -32.43841 -32.21943 -31.84437 -29.76058 -29.22719 -26.51889 -25.59825 -24.41588 -23.44321 -22.93143 -21.16068 -20.64017 -19.55976 -19.32230 -17.77997 -17.58209 -16.92265 -16.78861 -16.59388 -16.27520 -15.56191 -15.31352 -15.08317 -14.86655 -14.45326 -14.22964 -13.94509 -13.77910 -13.38044 -12.90987 -12.76613 -12.71744 -12.69004 -12.36304 -11.92057 -11.71101 -11.35484 -11.26149 -11.25123 -11.07021 -11.04850 -10.99918 -10.64571 -10.59748 -10.28552 -9.85482 -9.54611 -9.47102 -8.99899 -8.59455 -8.49373 -6.91686 -6.28477 -4.00250 0.88827 1.57533 1.97340 2.65891 2.69492 2.94077 2.94796 3.19826 3.33659 3.51265 3.58604 3.60350 4.05233 4.18641 4.20825 4.31736 4.33792 4.42396 4.70431 4.88782 4.95548 5.05896 5.10595 5.18320 5.31229 5.34682 5.43998 5.49697 5.56415 5.64873 5.66821 5.70287 5.82417 5.87837 5.98513 6.02266 6.14061 6.32002 6.97504 7.44344 7.56405 7.75652 7.94532 8.41906 8.43133 9.17723 10.80664 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.001965 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.649524 B =14248.120108 C =15439.892594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.118 4.118 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.625 5.625 14 C 0.100 3.900 15 C -0.120 4.120 16 C -0.117 4.117 17 H 0.096 0.904 18 C 0.133 3.867 19 N -0.708 5.708 20 C 0.616 3.384 21 O -0.517 6.517 22 C 0.145 3.855 23 N -0.484 5.484 24 C 0.202 3.798 25 N -0.400 5.400 26 H 0.454 0.546 27 N -0.248 5.248 28 C 0.112 3.888 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.232 0.768 40 H 0.079 0.921 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.084 -17.067 -5.669 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.335 3.665 12 O -0.392 6.392 13 N -0.363 5.363 14 C -0.023 4.023 15 C -0.158 4.158 16 C -0.137 4.137 17 H 0.114 0.886 18 C 0.010 3.990 19 N -0.362 5.362 20 C 0.398 3.602 21 O -0.390 6.390 22 C -0.135 4.135 23 N -0.210 5.210 24 C -0.096 4.096 25 N -0.123 5.123 26 H 0.301 0.699 27 N -0.088 5.088 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.248 0.752 40 H 0.098 0.902 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 26.765 -16.500 -4.734 31.797 hybrid contribution -0.060 0.214 -0.657 0.694 sum 26.705 -16.286 -5.392 31.740 Atomic orbital electron populations 1.69939 1.05898 1.27750 1.48076 1.24711 0.94455 0.98960 0.93187 0.86735 0.81914 0.83277 0.79930 1.19207 1.19950 1.15913 1.22306 0.88214 0.97536 1.58770 0.89381 1.84790 1.09338 1.00096 1.97423 1.23256 0.93669 1.04182 1.05691 1.19991 0.90573 0.80633 0.75262 1.90710 1.58879 1.41203 1.48382 1.48442 1.06890 1.05357 1.75566 1.22038 0.94166 0.83535 1.02594 1.22621 0.93608 0.97199 1.02423 1.22615 0.94294 0.95041 1.01720 0.88592 1.21398 0.81810 0.97997 0.97791 1.45686 1.05729 1.37832 1.46905 1.16214 0.80996 0.82125 0.80873 1.90854 1.85508 1.27954 1.34647 1.23794 0.92896 0.96483 1.00350 1.71324 1.19671 1.16505 1.13482 1.26667 0.86802 0.96517 0.99594 1.45284 1.12191 1.24295 1.30563 0.69936 1.74373 1.02255 1.17987 1.14169 1.22193 0.83425 0.94471 1.01047 0.91950 0.88560 0.88530 0.90891 0.90941 0.89876 0.89369 0.90373 0.90217 0.75063 0.75173 0.90227 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.31 5.35 36.01 0.19 -2.12 16 11 C 0.55 10.02 7.87 -10.98 -0.09 9.93 16 12 O -0.52 -11.41 16.12 5.55 0.09 -11.33 16 13 N -0.63 -8.35 3.33 -170.66 -0.57 -8.91 16 14 C 0.10 0.95 6.49 -3.06 -0.02 0.93 16 15 C -0.12 -0.77 6.42 -24.90 -0.16 -0.93 16 16 C -0.12 -0.84 3.03 -88.59 -0.27 -1.11 16 17 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 18 C 0.13 0.98 5.13 -4.04 -0.02 0.96 16 19 N -0.71 -6.06 5.50 -61.25 -0.34 -6.40 16 20 C 0.62 6.91 7.83 -12.32 -0.10 6.82 16 21 O -0.52 -7.36 17.09 5.32 0.09 -7.27 16 22 C 0.15 1.50 7.96 -156.35 -1.24 0.25 16 23 N -0.48 -4.02 11.09 -12.36 -0.14 -4.16 16 24 C 0.20 0.83 13.14 -90.48 -1.19 -0.36 16 25 N -0.40 -1.70 6.93 29.57 0.20 -1.50 16 26 H 0.45 -0.08 8.96 -190.22 -1.71 -1.78 16 27 N -0.25 -2.33 12.30 32.07 0.39 -1.93 16 28 C 0.11 1.20 6.32 -2.65 -0.02 1.18 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 31 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 3.17 8.18 -40.82 -0.33 2.84 16 39 H 0.23 -0.23 8.06 -52.49 -0.42 -0.66 16 40 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 41 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -40.39 369.12 -9.98 -50.37 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.66 Total: -3.72 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -2.69 Total: 3.57 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.33 Total: -48.64 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.39 -9.98 -50.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758797078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.628 kcal (2) G-P(sol) polarization free energy of solvation -40.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds