Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47016 * 125.64953 * 359.74753 * 13 11 10 15 15 C 1.54331 * 107.26920 * 178.90729 * 14 13 11 16 16 C 1.55151 * 102.94185 * 337.80724 * 15 14 13 17 17 H 1.09001 * 111.00674 * 277.42796 * 16 15 14 18 18 C 1.53003 * 111.00426 * 153.57644 * 16 15 14 19 19 N 1.46493 * 109.47126 * 174.99912 * 18 16 15 20 20 C 1.34781 * 120.00281 * 180.02562 * 19 18 16 21 21 O 1.21554 * 119.99299 * 359.97438 * 20 19 18 22 22 C 1.47863 * 120.00262 * 180.02562 * 20 19 18 23 23 N 1.34550 * 126.04840 * 359.68321 * 22 20 19 24 24 C 1.30874 * 107.26770 * 179.90059 * 23 22 20 25 25 N 1.34585 * 107.62584 * 0.35921 * 24 23 22 26 26 H 0.96994 * 125.74800 * 179.73071 * 25 24 23 27 27 N 1.28846 * 108.50268 * 359.77365 * 25 24 23 28 28 C 1.47426 * 125.64311 * 179.44245 * 13 11 10 29 29 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 1.09005 * 109.88553 * 298.32239 * 14 13 11 33 33 H 1.08999 * 109.88621 * 59.33259 * 14 13 11 34 34 H 1.09004 * 110.71657 * 96.16944 * 15 14 13 35 35 H 1.08998 * 110.71997 * 219.43877 * 15 14 13 36 36 H 1.08997 * 109.47212 * 295.00291 * 18 16 15 37 37 H 1.09003 * 109.46817 * 54.99759 * 18 16 15 38 38 H 0.97006 * 120.00270 * 0.02562 * 19 18 16 39 39 H 1.08002 * 126.18852 * 180.13972 * 24 23 22 40 40 H 1.08993 * 110.36867 * 323.00222 * 28 13 11 41 41 H 1.09007 * 110.36455 * 85.32433 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 5.2273 -5.7161 -0.0024 15 6 6.1962 -6.9168 -0.0367 16 6 7.4928 -6.3003 -0.6249 17 1 7.4453 -6.2551 -1.7129 18 6 8.7276 -7.0772 -0.1638 19 7 9.9177 -6.5432 -0.8307 20 6 11.1290 -7.0770 -0.5769 21 8 11.2340 -8.0012 0.2056 22 6 12.3302 -6.5376 -1.2496 23 7 12.3540 -5.5261 -2.1365 24 6 13.6008 -5.3526 -2.4946 25 7 14.3442 -6.2607 -1.8357 26 1 15.3054 -6.3672 -1.9095 27 7 13.5636 -6.9654 -1.0912 28 6 7.4688 -4.8792 -0.0142 29 1 -0.4850 0.8401 -0.0004 30 1 3.6439 -3.4322 -0.8874 31 1 3.6433 -3.4309 0.8926 32 1 4.6199 -5.7556 0.9019 33 1 4.5836 -5.7309 -0.8819 34 1 6.3725 -7.2989 0.9688 35 1 5.8132 -7.7029 -0.6875 36 1 8.8392 -6.9748 0.9156 37 1 8.6102 -8.1305 -0.4186 38 1 9.8339 -5.8054 -1.4549 39 1 13.9666 -4.6164 -3.1950 40 1 8.0427 -4.1899 -0.6335 41 1 7.8653 -4.8983 1.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758797078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = -10.832817 kcal Electronic energy + Delta-G solvation = -25519.023808 eV Core-core repulsion = 21560.856804 eV Total energy + Delta-G solvation = -3958.167004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.47541 -41.22816 -40.51098 -38.70889 -36.05997 -34.67248 -34.59917 -33.17674 -32.42017 -30.93031 -30.20161 -27.90197 -27.29843 -25.22204 -23.89886 -23.69479 -21.88474 -21.31269 -20.74821 -19.96375 -19.54847 -18.32242 -18.03925 -17.61439 -17.41487 -17.13867 -17.06876 -16.63312 -16.11282 -15.87776 -15.66122 -15.47317 -14.96033 -14.89682 -14.71964 -14.33635 -13.86299 -13.59861 -13.52620 -13.32687 -13.21645 -13.03475 -12.99279 -12.67142 -12.39523 -12.05030 -11.86278 -11.77942 -11.65802 -11.61098 -11.47001 -11.16790 -11.02720 -10.84352 -10.53965 -10.19144 -9.71481 -9.00758 -8.51246 -6.22523 0.26548 0.96601 1.12356 1.31592 1.45788 1.51342 1.51559 1.54111 2.06157 2.20748 2.22472 2.25465 2.68421 2.86853 3.07344 3.36499 3.50419 3.61387 3.73152 3.84916 4.03853 4.16109 4.25585 4.32999 4.39124 4.42122 4.58990 4.73535 4.75622 4.84733 4.88933 4.97562 5.06647 5.22125 5.23392 5.30171 5.38884 5.71048 5.91072 6.11523 6.29500 6.35593 6.88869 6.93814 7.05573 7.06372 8.60976 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.001965 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.649524 B =14248.120108 C =15439.892594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.102 4.102 11 C 0.546 3.454 12 O -0.565 6.565 13 N -0.616 5.616 14 C 0.087 3.913 15 C -0.109 4.109 16 C -0.098 4.098 17 H 0.107 0.893 18 C 0.136 3.864 19 N -0.698 5.698 20 C 0.612 3.388 21 O -0.558 6.558 22 C 0.119 3.881 23 N -0.513 5.513 24 C 0.222 3.778 25 N -0.383 5.383 26 H 0.472 0.528 27 N -0.279 5.279 28 C 0.105 3.895 29 H 0.277 0.723 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.418 0.582 39 H 0.283 0.717 40 H 0.067 0.933 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.695 -17.833 -6.698 33.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.253 4.253 11 C 0.334 3.666 12 O -0.444 6.444 13 N -0.350 5.350 14 C -0.035 4.035 15 C -0.147 4.147 16 C -0.118 4.118 17 H 0.125 0.875 18 C 0.013 3.987 19 N -0.350 5.350 20 C 0.394 3.606 21 O -0.434 6.434 22 C -0.160 4.160 23 N -0.240 5.240 24 C -0.075 4.075 25 N -0.109 5.109 26 H 0.323 0.677 27 N -0.121 5.121 28 C -0.017 4.017 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.255 0.745 39 H 0.298 0.702 40 H 0.086 0.914 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 28.385 -17.310 -5.783 33.746 hybrid contribution -0.469 0.316 -0.383 0.683 sum 27.916 -16.994 -6.165 33.258 Atomic orbital electron populations 1.70013 1.07232 1.29014 1.49063 1.25553 0.95288 1.02215 0.92892 0.85874 0.80643 0.79643 0.80259 1.18593 1.18297 1.16208 1.22436 0.90075 0.96731 1.58328 0.91888 1.84721 1.06632 1.06074 1.97574 1.23205 0.95468 0.99509 1.07088 1.19661 0.89465 0.81883 0.75600 1.90688 1.59439 1.43073 1.51162 1.48403 1.08793 1.04858 1.72951 1.22418 0.94835 0.82864 1.03373 1.22656 0.91872 0.96287 1.03850 1.22490 0.94702 0.92455 1.02105 0.87477 1.21446 0.81263 0.98541 0.97490 1.45685 1.05473 1.37427 1.46417 1.16471 0.81909 0.81710 0.80461 1.90814 1.86212 1.29817 1.36580 1.23665 0.92863 0.97812 1.01710 1.71293 1.22084 1.16610 1.13976 1.27617 0.85503 0.95921 0.98499 1.45271 1.12903 1.23393 1.29301 0.67692 1.74268 1.02618 1.19486 1.15691 1.22396 0.81594 0.96430 1.01293 0.91352 0.87027 0.87218 0.90303 0.90028 0.88682 0.86579 0.90814 0.89034 0.74513 0.70181 0.91448 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.66 13.97 21.65 0.30 -55.35 16 2 C 0.05 2.71 5.50 84.86 0.47 3.17 16 3 Si 0.91 45.13 27.74 68.60 1.90 47.03 16 4 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 7 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 9 S -0.18 -9.04 18.55 -56.49 -1.05 -10.09 16 10 C -0.10 -3.94 5.35 71.24 0.38 -3.56 16 11 C 0.55 19.66 7.87 87.66 0.69 20.35 16 12 O -0.56 -25.07 16.12 -3.04 -0.05 -25.12 16 13 N -0.62 -15.48 3.33 -812.22 -2.70 -18.19 16 14 C 0.09 1.42 6.49 86.73 0.56 1.98 16 15 C -0.11 -1.01 6.42 31.78 0.20 -0.81 16 16 C -0.10 -1.16 3.03 -9.48 -0.03 -1.19 16 17 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 18 C 0.14 1.77 5.13 86.38 0.44 2.21 16 19 N -0.70 -11.45 5.50 -465.95 -2.56 -14.01 16 20 C 0.61 13.82 7.83 86.79 0.68 14.50 16 21 O -0.56 -16.25 17.09 -3.88 -0.07 -16.31 16 22 C 0.12 2.43 7.96 137.12 1.09 3.52 16 23 N -0.51 -7.89 11.09 -193.03 -2.14 -10.03 16 24 C 0.22 1.25 13.14 180.30 2.37 3.62 16 25 N -0.38 -2.58 6.93 -60.37 -0.42 -2.99 16 26 H 0.47 -1.18 8.96 -219.81 -1.97 -3.15 16 27 N -0.28 -5.11 12.30 -52.44 -0.65 -5.76 16 28 C 0.11 2.12 6.32 86.78 0.55 2.67 16 29 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 0.74 8.04 -2.38 -0.02 0.72 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.42 6.09 8.18 -92.70 -0.76 5.34 16 39 H 0.28 -1.80 8.06 -2.91 -0.02 -1.83 16 40 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 41 H 0.07 1.41 7.90 -2.38 -0.02 1.39 16 Total: -1.00 -91.03 369.12 -1.01 -92.04 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -1.67 Total: 2.46 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 8.09 Total: 16.32 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -8.17 Total: -106.33 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.12 Total: -41.44 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -91.03 -1.01 -92.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758797078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.209 kcal (2) G-P(sol) polarization free energy of solvation -91.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds