Wall clock time and date at job start Tue Mar 31 2020 22:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47345 * 300.00308 * 3 2 1 6 6 H 1.48499 * 109.47284 * 60.00304 * 3 2 1 7 7 C 1.38796 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00339 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00145 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47463 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00252 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00133 * 180.02562 * 11 10 9 14 14 C 1.47017 * 125.64801 * 0.02562 * 13 11 10 15 15 C 1.54324 * 107.27235 * 181.01261 * 14 13 11 16 16 C 1.55162 * 102.94269 * 22.19163 * 15 14 13 17 17 H 1.08992 * 111.00389 * 82.60932 * 16 15 14 18 18 C 1.52999 * 111.00215 * 206.42541 * 16 15 14 19 19 N 1.46501 * 109.46948 * 184.99819 * 18 16 15 20 20 C 1.34769 * 120.00262 * 180.02562 * 19 18 16 21 21 O 1.21560 * 119.99983 * 0.02562 * 20 19 18 22 22 C 1.47876 * 120.00465 * 180.02562 * 20 19 18 23 23 N 1.34544 * 126.05208 * 180.02562 * 22 20 19 24 24 C 1.30869 * 107.27093 * 179.97438 * 23 22 20 25 25 N 1.34587 * 107.62370 * 0.24373 * 24 23 22 26 26 H 0.96999 * 125.74658 * 179.75201 * 25 24 23 27 27 N 1.28854 * 108.50070 * 359.59066 * 25 24 23 28 28 C 1.47428 * 125.64731 * 179.97438 * 13 11 10 29 29 H 0.96991 * 120.00289 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47241 * 59.99535 * 10 9 7 31 31 H 1.08999 * 109.47091 * 300.00373 * 10 9 7 32 32 H 1.09004 * 109.88677 * 61.59431 * 14 13 11 33 33 H 1.08998 * 110.01008 * 300.49864 * 14 13 11 34 34 H 1.09002 * 110.72234 * 263.82881 * 15 14 13 35 35 H 1.09004 * 110.72280 * 140.55058 * 15 14 13 36 36 H 1.08997 * 109.47169 * 65.00076 * 18 16 15 37 37 H 1.09001 * 109.47101 * 304.99526 * 18 16 15 38 38 H 0.97002 * 119.99615 * 359.97438 * 19 18 16 39 39 H 1.08002 * 126.18528 * 179.97438 * 24 23 22 40 40 H 1.08995 * 110.36602 * 37.08488 * 28 13 11 41 41 H 1.09002 * 110.37016 * 274.75539 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3430 -0.0008 14 6 4.3112 -6.2450 0.0008 15 6 4.8667 -7.6845 -0.0253 16 6 3.6854 -8.5023 -0.6112 17 1 3.6722 -8.4447 -1.6995 18 6 3.7403 -9.9577 -0.1426 19 7 2.6838 -10.7248 -0.8072 20 6 2.5394 -12.0391 -0.5461 21 8 3.2855 -12.5879 0.2411 22 6 1.4734 -12.8135 -1.2174 23 7 1.2205 -14.1241 -1.0480 24 6 0.2038 -14.4259 -1.8148 25 7 -0.1666 -13.3046 -2.4604 26 1 -0.8933 -13.2321 -3.0988 27 7 0.6045 -12.3429 -2.0850 28 6 2.4658 -7.7679 -0.0008 29 1 -0.4850 0.8399 0.0004 30 1 3.1246 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 4.6477 -5.7341 0.9030 33 1 4.6496 -5.7010 -0.8810 34 1 5.1079 -8.0232 0.9823 35 1 5.7400 -7.7492 -0.6745 36 1 3.5940 -9.9976 0.9368 37 1 4.7115 -10.3839 -0.3937 38 1 2.0878 -10.2866 -1.4345 39 1 -0.2523 -15.3997 -1.9150 40 1 1.5808 -7.9252 -0.6172 41 1 2.2861 -8.1127 1.0175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758797079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:01 Heat of formation + Delta-G solvation = 20.627534 kcal Electronic energy + Delta-G solvation = -25472.953431 eV Core-core repulsion = 21516.150650 eV Total energy + Delta-G solvation = -3956.802781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.95413 -40.20885 -39.48684 -37.50945 -35.17086 -33.89071 -32.57109 -32.43838 -31.63036 -29.69282 -29.09100 -26.41355 -25.48237 -24.46637 -23.42727 -22.84342 -21.15046 -20.62284 -19.44872 -19.26594 -17.87850 -17.62127 -16.94291 -16.79787 -16.56008 -15.95530 -15.52450 -15.28606 -14.95320 -14.81376 -14.46526 -14.21481 -13.91486 -13.82285 -13.33079 -12.90946 -12.71686 -12.67264 -12.51344 -12.29839 -11.82350 -11.68181 -11.31463 -11.20777 -11.08338 -11.03847 -11.02522 -10.99805 -10.76466 -10.57961 -10.25569 -9.81668 -9.50121 -9.41994 -9.08409 -8.53357 -8.24146 -6.51428 -6.22800 -3.93456 0.86870 1.64962 2.08731 2.51289 2.88702 2.98070 3.04332 3.20763 3.25395 3.30439 3.59990 3.76398 3.96519 4.15229 4.19784 4.23088 4.40977 4.44271 4.89773 4.94459 5.05155 5.08619 5.12498 5.33258 5.35408 5.45821 5.49957 5.53592 5.61437 5.70060 5.71772 5.74907 5.86271 5.93327 5.99413 6.13074 6.17527 6.38711 6.96454 7.47463 7.58818 7.64316 7.77466 8.34482 8.53530 9.22628 10.84724 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.001858 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.712273 B =15069.024013 C =16066.194749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.516 6.516 13 N -0.627 5.627 14 C 0.102 3.898 15 C -0.120 4.120 16 C -0.117 4.117 17 H 0.095 0.905 18 C 0.133 3.867 19 N -0.713 5.713 20 C 0.615 3.385 21 O -0.509 6.509 22 C 0.150 3.850 23 N -0.462 5.462 24 C 0.198 3.802 25 N -0.396 5.396 26 H 0.453 0.547 27 N -0.273 5.273 28 C 0.111 3.889 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.410 0.590 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 -27.285 -6.139 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.390 6.390 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.159 4.159 16 C -0.137 4.137 17 H 0.113 0.887 18 C 0.010 3.990 19 N -0.366 5.366 20 C 0.397 3.603 21 O -0.380 6.380 22 C -0.131 4.131 23 N -0.187 5.187 24 C -0.100 4.100 25 N -0.119 5.119 26 H 0.300 0.700 27 N -0.115 5.115 28 C -0.012 4.012 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.248 0.752 40 H 0.096 0.904 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.660 -27.347 -5.395 28.261 hybrid contribution 0.955 1.256 -0.848 1.791 sum 5.616 -26.091 -6.243 27.408 Atomic orbital electron populations 1.70025 1.05955 1.27356 1.46945 1.24997 0.95035 0.99050 0.94542 0.86111 0.79585 0.81854 0.77905 1.19603 1.20571 1.20552 1.22899 0.94936 0.91574 1.58836 0.90857 1.85403 1.05009 0.96399 1.96711 1.23505 1.06439 0.94938 1.04825 1.20036 0.85671 0.85483 0.75110 1.90710 1.14946 1.85134 1.48168 1.48489 1.06550 1.05579 1.75848 1.21994 0.80478 0.97287 1.02424 1.22625 0.97284 0.93572 1.02398 1.22655 0.96326 0.93081 1.01617 0.88660 1.21401 0.90776 0.88978 0.97843 1.45751 1.35653 1.08368 1.46861 1.16242 0.81657 0.81366 0.81081 1.90853 1.43400 1.69751 1.34023 1.23836 0.99232 0.90583 0.99469 1.71316 1.13781 1.12070 1.21484 1.26786 0.95092 0.95101 0.93046 1.45154 1.26677 1.06382 1.33735 0.69957 1.74283 1.05155 1.16737 1.15302 1.22224 0.97190 0.80773 1.00976 0.92231 0.89264 0.89288 0.91037 0.91100 0.89892 0.89452 0.90327 0.90213 0.75425 0.75167 0.90359 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.00 5.35 36.00 0.19 -2.80 16 11 C 0.55 10.52 7.87 -10.99 -0.09 10.44 16 12 O -0.52 -11.94 16.12 5.56 0.09 -11.85 16 13 N -0.63 -8.74 3.33 -170.53 -0.57 -9.30 16 14 C 0.10 1.01 6.49 -3.07 -0.02 0.99 16 15 C -0.12 -0.81 6.42 -24.89 -0.16 -0.97 16 16 C -0.12 -0.87 3.05 -88.47 -0.27 -1.14 16 17 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 18 C 0.13 1.01 5.13 -4.04 -0.02 0.99 16 19 N -0.71 -6.17 5.50 -61.24 -0.34 -6.50 16 20 C 0.62 7.08 7.83 -12.32 -0.10 6.98 16 21 O -0.51 -7.51 17.09 5.31 0.09 -7.42 16 22 C 0.15 1.59 7.96 -156.36 -1.24 0.34 16 23 N -0.46 -4.70 11.41 -12.36 -0.14 -4.84 16 24 C 0.20 0.93 13.14 -90.48 -1.19 -0.26 16 25 N -0.40 -1.68 6.93 29.57 0.20 -1.48 16 26 H 0.45 -0.01 8.96 -190.21 -1.70 -1.72 16 27 N -0.27 -2.24 11.98 32.07 0.38 -1.85 16 28 C 0.11 1.25 6.32 -2.53 -0.02 1.23 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.65 7.96 -51.93 -0.41 0.23 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.41 3.09 8.17 -40.82 -0.33 2.76 16 39 H 0.23 -0.15 8.06 -52.49 -0.42 -0.57 16 40 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 41 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -41.09 371.82 -10.51 -51.60 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -6.62 Total: -3.86 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.71 Total: 2.87 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.28 Total: -49.39 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -41.09 -10.51 -51.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758797079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.230 kcal (2) G-P(sol) polarization free energy of solvation -41.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds