Wall clock time and date at job start Tue Mar 31 2020 22:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47345 * 300.00308 * 3 2 1 6 6 H 1.48499 * 109.47284 * 60.00304 * 3 2 1 7 7 C 1.38796 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00339 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00145 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47463 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00252 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00133 * 180.02562 * 11 10 9 14 14 C 1.47017 * 125.64801 * 0.02562 * 13 11 10 15 15 C 1.54324 * 107.27235 * 181.01261 * 14 13 11 16 16 C 1.55162 * 102.94269 * 22.19163 * 15 14 13 17 17 H 1.08992 * 111.00389 * 82.60932 * 16 15 14 18 18 C 1.52999 * 111.00215 * 206.42541 * 16 15 14 19 19 N 1.46501 * 109.46948 * 184.99819 * 18 16 15 20 20 C 1.34769 * 120.00262 * 180.02562 * 19 18 16 21 21 O 1.21560 * 119.99983 * 0.02562 * 20 19 18 22 22 C 1.47876 * 120.00465 * 180.02562 * 20 19 18 23 23 N 1.34544 * 126.05208 * 180.02562 * 22 20 19 24 24 C 1.30869 * 107.27093 * 179.97438 * 23 22 20 25 25 N 1.34587 * 107.62370 * 0.24373 * 24 23 22 26 26 H 0.96999 * 125.74658 * 179.75201 * 25 24 23 27 27 N 1.28854 * 108.50070 * 359.59066 * 25 24 23 28 28 C 1.47428 * 125.64731 * 179.97438 * 13 11 10 29 29 H 0.96991 * 120.00289 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47241 * 59.99535 * 10 9 7 31 31 H 1.08999 * 109.47091 * 300.00373 * 10 9 7 32 32 H 1.09004 * 109.88677 * 61.59431 * 14 13 11 33 33 H 1.08998 * 110.01008 * 300.49864 * 14 13 11 34 34 H 1.09002 * 110.72234 * 263.82881 * 15 14 13 35 35 H 1.09004 * 110.72280 * 140.55058 * 15 14 13 36 36 H 1.08997 * 109.47169 * 65.00076 * 18 16 15 37 37 H 1.09001 * 109.47101 * 304.99526 * 18 16 15 38 38 H 0.97002 * 119.99615 * 359.97438 * 19 18 16 39 39 H 1.08002 * 126.18528 * 179.97438 * 24 23 22 40 40 H 1.08995 * 110.36602 * 37.08488 * 28 13 11 41 41 H 1.09002 * 110.37016 * 274.75539 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3430 -0.0008 14 6 4.3112 -6.2450 0.0008 15 6 4.8667 -7.6845 -0.0253 16 6 3.6854 -8.5023 -0.6112 17 1 3.6722 -8.4447 -1.6995 18 6 3.7403 -9.9577 -0.1426 19 7 2.6838 -10.7248 -0.8072 20 6 2.5394 -12.0391 -0.5461 21 8 3.2855 -12.5879 0.2411 22 6 1.4734 -12.8135 -1.2174 23 7 1.2205 -14.1241 -1.0480 24 6 0.2038 -14.4259 -1.8148 25 7 -0.1666 -13.3046 -2.4604 26 1 -0.8933 -13.2321 -3.0988 27 7 0.6045 -12.3429 -2.0850 28 6 2.4658 -7.7679 -0.0008 29 1 -0.4850 0.8399 0.0004 30 1 3.1246 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 4.6477 -5.7341 0.9030 33 1 4.6496 -5.7010 -0.8810 34 1 5.1079 -8.0232 0.9823 35 1 5.7400 -7.7492 -0.6745 36 1 3.5940 -9.9976 0.9368 37 1 4.7115 -10.3839 -0.3937 38 1 2.0878 -10.2866 -1.4345 39 1 -0.2523 -15.3997 -1.9150 40 1 1.5808 -7.9252 -0.6172 41 1 2.2861 -8.1127 1.0175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758797079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:01 Heat of formation + Delta-G solvation = -11.175721 kcal Electronic energy + Delta-G solvation = -25474.332524 eV Core-core repulsion = 21516.150650 eV Total energy + Delta-G solvation = -3958.181874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.47784 -41.21340 -40.50457 -38.69336 -36.06153 -34.59566 -34.45466 -33.46592 -32.37316 -30.87653 -30.12969 -27.76649 -27.17726 -25.27582 -24.02160 -23.57700 -21.90058 -21.32763 -20.70337 -19.88227 -19.54827 -18.46157 -18.00040 -17.74479 -17.42770 -16.89542 -16.85702 -16.64965 -16.17315 -15.82556 -15.69116 -15.48818 -15.00104 -14.75645 -14.49983 -14.32210 -13.85171 -13.56489 -13.47675 -13.24802 -13.16124 -13.01377 -12.91692 -12.60959 -12.40626 -12.06976 -11.79606 -11.71191 -11.66803 -11.63364 -11.39831 -11.16529 -10.99132 -10.81631 -10.28873 -10.21793 -9.70544 -8.68990 -8.35582 -6.14279 0.23463 1.13968 1.23740 1.41383 1.44851 1.54968 1.56890 1.61431 2.00795 2.08930 2.22404 2.26543 2.98688 3.15587 3.23374 3.42512 3.49466 3.56436 3.74774 3.90641 4.04742 4.20855 4.24056 4.33712 4.39092 4.44854 4.57707 4.72708 4.74827 4.83659 4.87833 4.96810 5.05971 5.21763 5.23642 5.30022 5.39392 5.41376 5.91297 6.19335 6.26316 6.37675 6.89104 7.05677 7.06236 7.10001 8.74012 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.001858 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.712273 B =15069.024013 C =16066.194749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.545 3.455 12 O -0.568 6.568 13 N -0.617 5.617 14 C 0.088 3.912 15 C -0.108 4.108 16 C -0.098 4.098 17 H 0.107 0.893 18 C 0.135 3.865 19 N -0.702 5.702 20 C 0.612 3.388 21 O -0.552 6.552 22 C 0.120 3.880 23 N -0.514 5.514 24 C 0.219 3.781 25 N -0.380 5.380 26 H 0.472 0.528 27 N -0.279 5.279 28 C 0.104 3.896 29 H 0.271 0.729 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.416 0.584 39 H 0.283 0.717 40 H 0.064 0.936 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -28.026 -7.138 29.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.333 3.667 12 O -0.447 6.447 13 N -0.352 5.352 14 C -0.034 4.034 15 C -0.146 4.146 16 C -0.117 4.117 17 H 0.126 0.874 18 C 0.012 3.988 19 N -0.354 5.354 20 C 0.394 3.606 21 O -0.427 6.427 22 C -0.160 4.160 23 N -0.240 5.240 24 C -0.078 4.078 25 N -0.106 5.106 26 H 0.324 0.676 27 N -0.123 5.123 28 C -0.018 4.018 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.252 0.748 39 H 0.299 0.701 40 H 0.082 0.918 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.823 -28.104 -6.431 29.627 hybrid contribution 0.255 1.317 -0.583 1.463 sum 7.077 -26.787 -7.014 28.580 Atomic orbital electron populations 1.70189 1.08004 1.28580 1.48041 1.26150 0.95987 1.03372 0.93710 0.84885 0.78641 0.76208 0.78083 1.17920 1.19883 1.19957 1.23225 0.95353 0.91836 1.58826 0.89840 1.85594 1.10616 0.99341 1.97035 1.23301 1.03360 0.93957 1.06426 1.19786 0.85459 0.86060 0.75402 1.90686 1.17138 1.85789 1.51117 1.48435 1.08078 1.05527 1.73156 1.22398 0.77648 0.99977 1.03341 1.22664 0.97399 0.90697 1.03877 1.22531 0.94707 0.92410 1.02046 0.87449 1.21452 0.91033 0.88759 0.97507 1.45743 1.35638 1.07690 1.46377 1.16497 0.81546 0.81935 0.80617 1.90810 1.45164 1.70700 1.36058 1.23699 1.00187 0.91153 1.00982 1.71257 1.16438 1.12270 1.24012 1.27681 0.93094 0.96415 0.90570 1.45192 1.26294 1.05676 1.33390 0.67617 1.74191 1.05220 1.17980 1.14892 1.22437 0.98700 0.79540 1.01173 0.91976 0.87604 0.87398 0.90331 0.89994 0.88688 0.86444 0.90852 0.88902 0.74777 0.70144 0.91759 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.22 21.65 0.29 -55.86 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.18 9.50 67.95 0.65 -30.53 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.12 -4.85 5.35 71.23 0.38 -4.47 16 11 C 0.54 21.03 7.87 87.65 0.69 21.72 16 12 O -0.57 -27.37 16.12 -3.03 -0.05 -27.42 16 13 N -0.62 -16.50 3.33 -811.81 -2.70 -19.20 16 14 C 0.09 1.49 6.49 86.73 0.56 2.06 16 15 C -0.11 -1.05 6.42 31.78 0.20 -0.85 16 16 C -0.10 -1.22 3.05 -9.40 -0.03 -1.25 16 17 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 18 C 0.14 1.84 5.13 86.38 0.44 2.29 16 19 N -0.70 -11.84 5.50 -465.94 -2.56 -14.40 16 20 C 0.61 14.34 7.83 86.80 0.68 15.02 16 21 O -0.55 -16.80 17.09 -3.90 -0.07 -16.87 16 22 C 0.12 2.54 7.96 137.13 1.09 3.64 16 23 N -0.51 -10.23 11.41 -193.03 -2.20 -12.43 16 24 C 0.22 1.60 13.14 180.30 2.37 3.97 16 25 N -0.38 -2.51 6.93 -60.37 -0.42 -2.93 16 26 H 0.47 -1.15 8.96 -219.80 -1.97 -3.12 16 27 N -0.28 -4.38 11.98 -52.44 -0.63 -5.01 16 28 C 0.10 2.25 6.32 86.85 0.55 2.79 16 29 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 30 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 0.77 8.04 -2.39 -0.02 0.75 16 35 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 1.13 7.96 -2.39 -0.02 1.11 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.42 6.08 8.17 -92.71 -0.76 5.32 16 39 H 0.28 -1.45 8.06 -2.91 -0.02 -1.47 16 40 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 41 H 0.07 1.49 7.91 -2.39 -0.02 1.47 16 Total: -1.00 -95.23 371.82 -1.06 -96.28 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -1.64 Total: 6.50 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 8.05 Total: 15.56 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -8.22 Total: -109.82 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.12 Total: -44.28 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -95.23 -1.06 -96.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758797079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.109 kcal (2) G-P(sol) polarization free energy of solvation -95.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds