Wall clock time and date at job start Tue Mar 31 2020 22:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 120.00321 * 2 1 4 4 H 1.48506 * 109.47057 * 270.00371 * 3 2 1 5 5 H 1.48508 * 109.47020 * 29.99827 * 3 2 1 6 6 H 1.48492 * 109.47537 * 149.99953 * 3 2 1 7 7 C 1.38806 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99994 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99595 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99780 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46968 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99972 * 5.01811 * 11 10 9 13 13 N 1.34784 * 119.99783 * 185.01598 * 11 10 9 14 14 C 1.46502 * 119.99631 * 185.04573 * 13 11 10 15 15 C 1.53007 * 109.46967 * 269.99636 * 14 13 11 16 16 N 1.46492 * 109.46980 * 180.02562 * 15 14 13 17 17 C 1.34783 * 119.99971 * 180.02562 * 16 15 14 18 18 O 1.21613 * 119.99524 * 359.97438 * 17 16 15 19 19 C 1.47232 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.37004 * 127.19064 * 179.97438 * 19 17 16 21 21 N 1.33316 * 106.37447 * 180.02562 * 20 19 17 22 22 N 1.28518 * 109.43688 * 359.97438 * 21 20 19 23 23 N 1.28705 * 110.64004 * 0.02562 * 22 21 20 24 24 H 0.97006 * 126.03871 * 179.97438 * 23 22 21 25 25 C 1.46499 * 119.99930 * 5.04331 * 13 11 10 26 26 C 1.53005 * 117.49641 * 182.75388 * 25 13 11 27 27 C 1.52998 * 60.00016 * 252.51169 * 26 25 13 28 28 H 0.96997 * 119.99800 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47205 * 60.00051 * 10 9 7 30 30 H 1.08996 * 109.47255 * 299.99697 * 10 9 7 31 31 H 1.09000 * 109.46841 * 150.00460 * 14 13 11 32 32 H 1.08999 * 109.47105 * 30.00063 * 14 13 11 33 33 H 1.09004 * 109.46426 * 60.00264 * 15 14 13 34 34 H 1.08997 * 109.46877 * 300.00461 * 15 14 13 35 35 H 0.96998 * 120.00252 * 359.97438 * 16 15 14 36 36 H 1.08001 * 126.81324 * 0.04381 * 20 19 17 37 37 H 1.08998 * 115.55365 * 328.46367 * 25 13 11 38 38 H 1.09001 * 117.49628 * 0.02562 * 26 25 13 39 39 H 1.09003 * 117.49758 * 145.02104 * 26 25 13 40 40 H 1.09000 * 117.50004 * 252.51357 * 27 26 25 41 41 H 1.09006 * 117.51971 * 107.48075 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5729 -3.2326 -0.0010 12 8 6.3433 -2.3003 0.0899 13 7 6.0462 -4.4905 -0.1031 14 6 7.4851 -4.7428 0.0067 15 6 8.1243 -4.6630 -1.3811 16 7 9.5630 -4.9160 -1.2714 17 6 10.3369 -4.8960 -2.3747 18 8 9.8406 -4.6684 -3.4614 19 6 11.7830 -5.1496 -2.2644 20 6 12.7010 -5.1655 -3.2813 21 7 13.8794 -5.4358 -2.7196 22 7 13.7260 -5.5795 -1.4518 23 7 12.4920 -5.4193 -1.1231 24 1 12.1279 -5.4792 -0.2259 25 6 5.1217 -5.6053 -0.3238 26 6 5.7132 -7.0157 -0.3664 27 6 5.2217 -6.3531 -1.6549 28 1 -0.4850 0.8400 -0.0004 29 1 3.6432 -3.4319 -0.8896 30 1 3.6439 -3.4315 0.8904 31 1 7.6489 -5.7358 0.4255 32 1 7.9365 -3.9946 0.6583 33 1 7.9604 -3.6701 -1.7999 34 1 7.6728 -5.4112 -2.0326 35 1 9.9589 -5.0971 -0.4046 36 1 12.5082 -4.9930 -4.3299 37 1 4.1305 -5.4879 0.1142 38 1 6.7901 -7.1141 -0.2298 39 1 5.1112 -7.8265 0.0439 40 1 4.2964 -6.7279 -2.0923 41 1 5.9751 -6.0152 -2.3666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759089501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:30 Heat of formation + Delta-G solvation = 63.216373 kcal Electronic energy + Delta-G solvation = -25975.432426 eV Core-core repulsion = 22020.476436 eV Total energy + Delta-G solvation = -3954.955990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.88522 -40.47178 -39.76577 -37.58563 -35.80773 -34.16443 -33.36249 -32.48608 -32.05267 -30.72940 -28.36345 -25.68527 -25.12914 -23.88094 -23.18826 -22.77938 -22.28932 -21.58954 -20.11642 -19.16909 -18.08452 -17.31391 -17.06673 -16.94241 -16.81791 -16.12384 -15.58546 -15.43824 -15.04206 -14.91279 -14.82410 -14.63228 -14.17812 -13.95472 -13.69300 -13.12682 -12.84983 -12.74171 -12.45427 -12.27575 -12.07613 -11.82499 -11.43835 -11.33202 -11.31095 -11.30146 -11.05175 -10.92910 -10.82026 -10.65485 -10.10955 -9.91605 -9.71154 -9.67006 -9.05074 -8.76700 -8.56664 -6.98422 -6.33540 -4.06068 0.32860 1.77210 1.83979 2.13285 2.53388 2.65149 2.66770 3.04672 3.29577 3.46079 3.50211 3.51364 3.76021 4.08929 4.26151 4.30502 4.38041 4.42003 4.48833 4.51783 4.60788 4.63404 4.75062 4.90571 5.02991 5.05772 5.30051 5.38439 5.45441 5.49904 5.54736 5.62894 5.68544 5.71543 5.80866 5.92248 5.98562 6.26821 6.68034 7.17775 7.41764 7.71014 7.89366 8.19577 8.36631 9.12460 10.75569 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.002289 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.639376 B =12228.264222 C =13270.356666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.089 0.911 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.539 3.461 12 O -0.509 6.509 13 N -0.589 5.589 14 C 0.103 3.897 15 C 0.099 3.901 16 N -0.721 5.721 17 C 0.596 3.404 18 O -0.505 6.505 19 C -0.066 4.066 20 C 0.036 3.964 21 N -0.268 5.268 22 N -0.044 5.044 23 N -0.375 5.375 24 H 0.451 0.549 25 C 0.073 3.927 26 C -0.185 4.185 27 C -0.193 4.193 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.395 0.605 36 H 0.206 0.794 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.510 -17.685 0.216 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.107 0.893 9 S 0.083 5.917 10 C -0.271 4.271 11 C 0.328 3.672 12 O -0.383 6.383 13 N -0.323 5.323 14 C -0.021 4.021 15 C -0.025 4.025 16 N -0.373 5.373 17 C 0.379 3.621 18 O -0.377 6.377 19 C -0.200 4.200 20 C -0.123 4.123 21 N -0.133 5.133 22 N -0.027 5.027 23 N -0.102 5.102 24 H 0.297 0.703 25 C -0.032 4.032 26 C -0.222 4.222 27 C -0.232 4.232 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.223 0.777 37 H 0.155 0.845 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.525 -16.267 -0.154 26.981 hybrid contribution -1.978 -0.305 0.608 2.092 sum 19.547 -16.572 0.455 25.630 Atomic orbital electron populations 1.69932 1.05893 1.27813 1.47884 1.24713 0.94462 0.98967 0.93157 0.86743 0.81869 0.83312 0.79969 1.19182 1.19907 1.15955 1.22278 0.88058 0.97540 1.58976 0.89332 1.84806 1.09585 0.99860 1.97439 1.23304 0.93490 1.04442 1.05879 1.20365 0.90968 0.81212 0.74695 1.90719 1.58861 1.41322 1.47380 1.47261 1.05117 1.06365 1.73538 1.21518 0.81605 1.03001 0.95960 1.22068 0.77956 1.03656 0.98847 1.45704 1.09520 1.72856 1.09240 1.16701 0.82913 0.77699 0.84820 1.90922 1.72813 1.47495 1.26496 1.22375 0.95297 1.14461 0.87897 1.23978 0.87095 0.99924 1.01309 1.75041 1.23253 1.16181 0.98872 1.78251 0.97990 1.16214 1.10197 1.45607 1.06964 1.46760 1.10892 0.70266 1.21851 0.95158 0.84775 1.01422 1.23334 1.01697 0.95081 1.02126 1.23554 1.04146 1.03860 0.91643 0.91896 0.88331 0.88234 0.89620 0.88907 0.89743 0.90336 0.77120 0.77701 0.84537 0.88385 0.87576 0.87583 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.97 55.49 0.78 -25.26 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.40 27.74 -169.99 -4.71 16.69 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 7 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.19 4.68 36.01 0.17 -2.03 16 11 C 0.54 8.77 7.67 -10.98 -0.08 8.69 16 12 O -0.51 -10.02 15.50 5.56 0.09 -9.93 16 13 N -0.59 -6.63 2.80 -166.10 -0.47 -7.09 16 14 C 0.10 0.85 5.02 -4.04 -0.02 0.83 16 15 C 0.10 0.88 5.96 -4.04 -0.02 0.86 16 16 N -0.72 -4.62 5.55 -61.45 -0.34 -4.96 16 17 C 0.60 5.25 7.81 -12.60 -0.10 5.15 16 18 O -0.51 -6.50 16.92 5.27 0.09 -6.41 16 19 C -0.07 -0.49 7.17 -82.33 -0.59 -1.08 16 20 C 0.04 0.30 11.87 -17.35 -0.21 0.10 16 21 N -0.27 -2.64 12.35 30.47 0.38 -2.27 16 22 N -0.04 -0.38 13.35 60.35 0.81 0.43 16 23 N -0.37 -1.99 6.97 33.31 0.23 -1.76 16 24 H 0.45 0.49 8.32 -190.33 -1.58 -1.10 16 25 C 0.07 0.65 5.79 -67.93 -0.39 0.26 16 26 C -0.18 -1.15 9.74 -26.73 -0.26 -1.41 16 27 C -0.19 -1.52 10.19 -26.73 -0.27 -1.80 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.10 1.68 7.87 -51.92 -0.41 1.27 16 30 H 0.10 1.68 7.96 -51.92 -0.41 1.26 16 31 H 0.09 0.44 5.99 -51.93 -0.31 0.13 16 32 H 0.09 0.85 7.50 -51.93 -0.39 0.46 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.71 5.89 -51.93 -0.31 0.40 16 35 H 0.40 1.06 7.74 -40.82 -0.32 0.74 16 36 H 0.21 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.14 1.22 7.13 -51.93 -0.37 0.85 16 38 H 0.10 0.51 6.11 -51.93 -0.32 0.19 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.86 6.12 -51.93 -0.32 0.54 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -37.23 365.54 -7.21 -44.44 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.00 Total: -1.84 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.57 Total: -2.05 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 1.38 Total: -40.91 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.18 Total: -16.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.69 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.23 -7.21 -44.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759089501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.655 kcal (2) G-P(sol) polarization free energy of solvation -37.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds