Wall clock time and date at job start Tue Mar 31 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 N 1.46500 * 114.26621 * 139.79206 * 15 14 13 17 17 C 1.34767 * 119.99895 * 111.47434 * 16 15 14 18 18 O 1.21287 * 120.00399 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47286 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47379 * 180.02562 * 20 19 17 22 22 N 1.33244 * 125.52487 * 269.69121 * 21 20 19 23 23 C 1.30831 * 109.82567 * 179.85291 * 22 21 20 24 24 N 1.34426 * 108.07891 * 0.40738 * 23 22 21 25 25 H 0.97007 * 126.82150 * 179.78959 * 24 23 22 26 26 N 1.30714 * 125.52603 * 89.99854 * 21 20 19 27 27 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 28 28 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 30 30 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 31 31 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 32 32 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 33 33 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 34 34 H 0.97001 * 119.99661 * 291.47702 * 16 15 14 35 35 H 1.08992 * 109.47297 * 300.00293 * 19 17 16 36 36 H 1.08998 * 109.47345 * 60.00964 * 19 17 16 37 37 H 1.09004 * 109.47092 * 300.00470 * 20 19 17 38 38 H 1.09004 * 109.47161 * 60.00103 * 20 19 17 39 39 H 1.08002 * 125.95758 * 180.12007 * 23 22 21 40 40 H 1.09001 * 113.46952 * 321.86856 * 27 13 11 41 41 H 1.09004 * 113.46955 * 92.25117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.9428 -9.4241 0.9914 18 8 6.0891 -8.9799 2.1105 19 6 6.8433 -10.5255 0.4943 20 6 7.8470 -10.8964 1.5880 21 6 8.7479 -11.9974 1.0908 22 7 8.5209 -13.3035 1.2249 23 6 9.4975 -13.9819 0.6794 24 7 10.3887 -13.1056 0.1845 25 1 11.2172 -13.3154 -0.2744 26 7 9.8814 -11.8258 0.4629 27 6 2.7297 -7.8092 -0.0165 28 1 -0.4851 0.8400 -0.0004 29 1 3.1212 -3.7293 -0.8992 30 1 3.1279 -3.7332 0.8807 31 1 4.7224 -6.6035 -1.0299 32 1 4.8324 -5.7788 0.5838 33 1 4.0523 -7.8025 1.7636 34 1 4.8572 -9.2891 -0.7020 35 1 6.2430 -11.3993 0.2412 36 1 7.3799 -10.1844 -0.3910 37 1 8.4474 -10.0227 1.8416 38 1 7.3102 -11.2377 2.4732 39 1 9.5764 -15.0582 0.6383 40 1 1.9144 -8.1821 0.6034 41 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759186363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:31 Heat of formation + Delta-G solvation = 21.972452 kcal Electronic energy + Delta-G solvation = -24775.080216 eV Core-core repulsion = 20818.335755 eV Total energy + Delta-G solvation = -3956.744461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03600 -41.74184 -40.42180 -38.89130 -35.23439 -34.96257 -34.60537 -32.95427 -31.97130 -31.43045 -29.08242 -27.68636 -26.98549 -26.34754 -23.66026 -22.95249 -21.68009 -21.01919 -20.44153 -19.54126 -19.21619 -18.21008 -18.05997 -17.71644 -17.00130 -16.89049 -16.63879 -16.48278 -16.10712 -15.95264 -15.71608 -15.18205 -14.88796 -14.46907 -14.44311 -14.04846 -13.80135 -13.70981 -13.58343 -13.21400 -13.18336 -13.15341 -13.06878 -12.92036 -12.61359 -12.21095 -12.11385 -11.74008 -11.19161 -11.17354 -11.07701 -11.02392 -10.90572 -10.61405 -10.32151 -10.13249 -9.84697 -8.70392 -8.36538 -6.15584 0.68327 1.15133 1.40001 1.40855 1.48168 1.54437 1.60752 1.75352 1.87887 1.92481 2.25125 2.35988 2.97777 3.13559 3.24224 3.29426 3.57311 3.69844 3.80961 3.87817 4.04214 4.13437 4.22477 4.26558 4.36927 4.40753 4.43318 4.53718 4.59822 4.63355 4.81026 4.93736 4.96755 5.04279 5.28369 5.40282 5.40441 5.45713 6.18303 6.29217 6.46166 6.57797 7.03181 7.04745 7.14247 7.25347 8.73104 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.001554 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.366091 B =18008.080337 C =18824.379770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.120 4.120 11 C 0.565 3.435 12 O -0.564 6.564 13 N -0.651 5.651 14 C 0.085 3.915 15 C 0.127 3.873 16 N -0.699 5.699 17 C 0.522 3.478 18 O -0.577 6.577 19 C -0.118 4.118 20 C -0.011 4.011 21 C 0.220 3.780 22 N -0.578 5.578 23 C 0.276 3.724 24 N -0.477 5.477 25 H 0.457 0.543 26 N -0.345 5.345 27 C 0.098 3.902 28 H 0.272 0.728 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.424 0.576 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.271 0.729 40 H 0.078 0.922 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.232 -32.025 -3.844 40.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.271 4.271 11 C 0.354 3.646 12 O -0.442 6.442 13 N -0.387 5.387 14 C -0.038 4.038 15 C 0.019 3.981 16 N -0.352 5.352 17 C 0.310 3.690 18 O -0.456 6.456 19 C -0.159 4.159 20 C -0.051 4.051 21 C -0.062 4.062 22 N -0.308 5.308 23 C -0.022 4.022 24 N -0.196 5.196 25 H 0.306 0.694 26 N -0.175 5.175 27 C -0.025 4.025 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.262 0.738 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.286 0.714 40 H 0.096 0.904 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.271 -31.182 -3.033 38.438 hybrid contribution 1.861 0.864 -0.588 2.134 sum 24.132 -30.318 -3.620 38.918 Atomic orbital electron populations 1.70183 1.07969 1.28640 1.47893 1.26128 0.95976 1.03288 0.93601 0.84890 0.78543 0.76233 0.78176 1.18131 1.19714 1.19878 1.23224 0.95330 0.91906 1.59072 0.89989 1.85554 1.10259 0.99198 1.97044 1.23270 1.03555 0.93844 1.06403 1.19529 0.84905 0.85283 0.74839 1.90697 1.16842 1.85492 1.51157 1.49198 1.09438 1.06637 1.73470 1.23860 0.79952 0.97066 1.02955 1.22470 0.89168 0.86554 0.99867 1.45582 1.32884 1.37658 1.19113 1.20977 0.80492 0.82919 0.84565 1.90754 1.71421 1.61763 1.21681 1.21492 0.96810 0.97733 0.99838 1.19573 0.94232 0.93074 0.98218 1.24317 0.92775 0.92885 0.96258 1.70449 1.29489 1.03872 1.26962 1.27055 0.84397 1.00476 0.90289 1.48121 1.22255 1.03343 1.45928 0.69373 1.77964 1.13832 1.02185 1.23563 1.23514 0.97457 0.78926 1.02604 0.91898 0.87429 0.87841 0.86389 0.89761 0.86679 0.73787 0.86299 0.86567 0.89677 0.89230 0.71384 0.90396 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 2 C 0.01 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.85 9.50 67.95 0.65 -31.20 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.12 -5.01 5.98 71.24 0.43 -4.58 16 11 C 0.57 22.22 8.10 87.66 0.71 22.93 16 12 O -0.56 -27.39 16.64 -3.02 -0.05 -27.44 16 13 N -0.65 -17.52 3.69 -857.80 -3.16 -20.68 16 14 C 0.09 1.50 8.25 83.26 0.69 2.19 16 15 C 0.13 1.99 4.62 45.56 0.21 2.20 16 16 N -0.70 -6.86 5.39 -441.47 -2.38 -9.24 16 17 C 0.52 7.48 7.83 87.66 0.69 8.17 16 18 O -0.58 -13.89 15.57 -3.05 -0.05 -13.94 16 19 C -0.12 -1.08 5.68 29.85 0.17 -0.91 16 20 C -0.01 -0.15 5.13 29.85 0.15 0.00 16 21 C 0.22 3.38 7.39 138.63 1.03 4.41 16 22 N -0.58 -7.98 11.19 -191.80 -2.15 -10.13 16 23 C 0.28 1.39 13.13 180.36 2.37 3.76 16 24 N -0.48 -2.95 7.45 -60.49 -0.45 -3.40 16 25 H 0.46 -0.59 8.96 -213.09 -1.91 -2.50 16 26 N -0.35 -5.17 12.80 -51.33 -0.66 -5.82 16 27 C 0.10 1.77 8.38 83.18 0.70 2.47 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 30 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 2.38 7.45 -2.39 -0.02 2.36 16 34 H 0.42 1.12 8.76 -92.71 -0.81 0.31 16 35 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.27 -1.75 8.06 -2.91 -0.02 -1.77 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -94.37 377.54 -1.13 -95.49 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -1.63 Total: 3.97 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 8.24 Total: 10.76 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -8.51 Total: -105.42 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.10 Total: -41.38 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -94.37 -1.13 -95.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759186363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.467 kcal (2) G-P(sol) polarization free energy of solvation -94.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds