Wall clock time and date at job start Tue Mar 31 2020 22:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 N 1.46500 * 114.26621 * 139.79206 * 15 14 13 17 17 C 1.34767 * 119.99895 * 111.47434 * 16 15 14 18 18 O 1.21287 * 120.00399 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47286 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47379 * 180.02562 * 20 19 17 22 22 C 1.35345 * 126.90996 * 274.68494 * 21 20 19 23 23 N 1.33773 * 106.49618 * 179.90651 * 22 21 20 24 24 N 1.28634 * 108.88437 * 0.36531 * 23 22 21 25 25 N 1.28715 * 110.17859 * 359.76853 * 24 23 22 26 26 H 0.96996 * 125.86527 * 180.02562 * 25 24 23 27 27 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 28 28 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 30 30 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 31 31 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 32 32 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 33 33 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 34 34 H 0.97001 * 119.99661 * 291.47702 * 16 15 14 35 35 H 1.08992 * 109.47297 * 300.00293 * 19 17 16 36 36 H 1.08998 * 109.47345 * 60.00964 * 19 17 16 37 37 H 1.09004 * 109.47092 * 300.00470 * 20 19 17 38 38 H 1.09004 * 109.47161 * 60.00103 * 20 19 17 39 39 H 1.08003 * 126.75538 * 0.03693 * 22 21 20 40 40 H 1.09001 * 113.46952 * 321.86856 * 27 13 11 41 41 H 1.09004 * 113.46955 * 92.25117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.9428 -9.4241 0.9914 18 8 6.0891 -8.9799 2.1105 19 6 6.8433 -10.5255 0.4943 20 6 7.8470 -10.8964 1.5880 21 6 8.7479 -11.9974 1.0908 22 6 8.5021 -13.3278 1.1277 23 7 9.5662 -13.9260 0.5806 24 7 10.4179 -13.0261 0.2352 25 7 9.9678 -11.8550 0.5229 26 1 10.4245 -11.0149 0.3602 27 6 2.7297 -7.8092 -0.0165 28 1 -0.4851 0.8400 -0.0004 29 1 3.1212 -3.7293 -0.8992 30 1 3.1279 -3.7332 0.8807 31 1 4.7224 -6.6035 -1.0299 32 1 4.8324 -5.7788 0.5838 33 1 4.0523 -7.8025 1.7636 34 1 4.8572 -9.2891 -0.7020 35 1 6.2430 -11.3993 0.2412 36 1 7.3799 -10.1844 -0.3910 37 1 8.4474 -10.0227 1.8416 38 1 7.3102 -11.2377 2.4732 39 1 7.6194 -13.8113 1.5196 40 1 1.9144 -8.1821 0.6034 41 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759227389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:35 Heat of formation + Delta-G solvation = 59.361483 kcal Electronic energy + Delta-G solvation = -24837.420384 eV Core-core repulsion = 20882.297233 eV Total energy + Delta-G solvation = -3955.123151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.84151 -40.94095 -39.64366 -37.67253 -35.06152 -34.31380 -33.69537 -32.47169 -30.87186 -30.19258 -27.90184 -26.22762 -25.69924 -25.41200 -23.51397 -22.53495 -21.83020 -21.03519 -19.20165 -18.84268 -17.81357 -17.62872 -17.14073 -16.71722 -16.51771 -16.28290 -15.48798 -15.14223 -14.90782 -14.84002 -14.71725 -14.30243 -14.08839 -13.85670 -13.47832 -13.02033 -12.97428 -12.95182 -12.73216 -12.53862 -12.32248 -11.96472 -11.89246 -11.44472 -11.38292 -11.12470 -11.08292 -11.07037 -10.81267 -10.49124 -9.88244 -9.74269 -9.63741 -9.48425 -9.10064 -8.78143 -8.30566 -6.55963 -6.25559 -3.97202 0.97182 2.01010 2.05300 2.15664 2.36346 2.77591 3.01730 3.20624 3.21834 3.26160 3.49567 3.79547 3.93833 4.04077 4.15871 4.16299 4.32569 4.41331 4.46653 4.61066 4.73166 4.79634 4.83584 4.85868 5.08386 5.09646 5.24602 5.28714 5.30027 5.36600 5.48808 5.52026 5.58728 5.79960 5.83826 5.99149 6.07354 6.26088 6.89760 7.55195 7.65084 7.68991 7.91011 8.30827 8.40656 9.19499 10.81814 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024726 B = 0.001560 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.156269 B =17939.621809 C =18778.701450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.145 4.145 11 C 0.567 3.433 12 O -0.509 6.509 13 N -0.650 5.650 14 C 0.087 3.913 15 C 0.109 3.891 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.533 6.533 19 C -0.138 4.138 20 C -0.034 4.034 21 C -0.009 4.009 22 C -0.045 4.045 23 N -0.266 5.266 24 N -0.081 5.081 25 N -0.389 5.389 26 H 0.448 0.552 27 C 0.097 3.903 28 H 0.270 0.730 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.405 0.595 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.897 -24.271 -0.461 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.295 4.295 11 C 0.356 3.644 12 O -0.382 6.382 13 N -0.390 5.390 14 C -0.038 4.038 15 C 0.003 3.997 16 N -0.369 5.369 17 C 0.304 3.696 18 O -0.408 6.408 19 C -0.178 4.178 20 C -0.074 4.074 21 C -0.143 4.143 22 C -0.202 4.202 23 N -0.133 5.133 24 N -0.062 5.062 25 N -0.110 5.110 26 H 0.294 0.706 27 C -0.027 4.027 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.240 0.760 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.209 0.791 40 H 0.104 0.896 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.990 -24.875 -0.224 30.124 hybrid contribution 1.347 2.314 -0.298 2.694 sum 18.337 -22.560 -0.523 29.077 Atomic orbital electron populations 1.70001 1.05960 1.27650 1.46602 1.24987 0.95033 0.99022 0.94434 0.86215 0.79244 0.81179 0.78814 1.19941 1.20749 1.19900 1.22812 0.94877 0.91544 1.59317 0.90936 1.85407 1.04704 0.96348 1.96748 1.23479 1.06652 0.94402 1.04990 1.19943 0.85151 0.84747 0.74514 1.90729 1.14696 1.84743 1.48064 1.49347 1.07731 1.05767 1.76106 1.23501 0.82755 0.96605 1.00934 1.22968 0.89543 0.86216 1.01006 1.45826 1.33924 1.38698 1.18407 1.20578 0.80672 0.83068 0.85321 1.90772 1.70234 1.60265 1.19578 1.21680 0.97687 0.98478 1.00003 1.19882 0.94563 0.94757 0.98161 1.22304 0.89344 0.98190 1.04491 1.23496 1.00717 0.90467 1.05523 1.75143 1.00760 1.24475 1.12879 1.78340 1.21459 0.86578 1.19778 1.45185 1.14024 1.10470 1.41300 0.70608 1.23204 0.97032 0.81868 1.00610 0.92062 0.89247 0.89124 0.89651 0.89626 0.84817 0.76017 0.87767 0.88575 0.89283 0.87571 0.79087 0.89581 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.14 -2.92 5.98 36.00 0.22 -2.71 16 11 C 0.57 10.65 8.10 -10.99 -0.09 10.56 16 12 O -0.51 -11.63 16.64 5.56 0.09 -11.54 16 13 N -0.65 -8.57 3.69 -185.06 -0.68 -9.25 16 14 C 0.09 0.78 8.25 -8.37 -0.07 0.71 16 15 C 0.11 0.81 4.62 -67.66 -0.31 0.50 16 16 N -0.72 -3.14 5.39 -53.47 -0.29 -3.43 16 17 C 0.52 2.80 7.83 -10.99 -0.09 2.71 16 18 O -0.53 -5.19 15.57 5.55 0.09 -5.10 16 19 C -0.14 -0.27 5.68 -27.88 -0.16 -0.43 16 20 C -0.03 -0.09 5.07 -27.88 -0.14 -0.24 16 21 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 22 C -0.04 -0.26 11.99 -17.74 -0.21 -0.47 16 23 N -0.27 -2.41 12.41 30.23 0.38 -2.04 16 24 N -0.08 -0.67 13.38 60.35 0.81 0.14 16 25 N -0.39 -1.73 6.98 33.54 0.23 -1.50 16 26 H 0.45 0.45 8.96 -190.40 -1.71 -1.26 16 27 C 0.10 0.88 8.38 -8.50 -0.07 0.80 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.13 1.24 7.45 -51.93 -0.39 0.85 16 34 H 0.40 0.62 8.76 -40.82 -0.36 0.27 16 35 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.09 0.26 8.10 -51.93 -0.42 -0.16 16 38 H 0.11 0.34 8.10 -51.93 -0.42 -0.08 16 39 H 0.19 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -39.92 376.84 -8.10 -48.03 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -6.64 Total: -6.15 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.27 Total: -2.00 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 1.18 Total: -41.26 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.18 Total: -16.64 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.92 -8.10 -48.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759227389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.387 kcal (2) G-P(sol) polarization free energy of solvation -39.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds