Wall clock time and date at job start Tue Mar 31 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 N 1.46500 * 114.26621 * 139.79206 * 15 14 13 17 17 C 1.34767 * 119.99895 * 111.47434 * 16 15 14 18 18 O 1.21287 * 120.00399 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47286 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47379 * 180.02562 * 20 19 17 22 22 C 1.35345 * 126.90996 * 274.68494 * 21 20 19 23 23 N 1.33773 * 106.49618 * 179.90651 * 22 21 20 24 24 N 1.28634 * 108.88437 * 0.36531 * 23 22 21 25 25 N 1.28715 * 110.17859 * 359.76853 * 24 23 22 26 26 H 0.96996 * 125.86527 * 180.02562 * 25 24 23 27 27 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 28 28 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 30 30 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 31 31 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 32 32 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 33 33 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 34 34 H 0.97001 * 119.99661 * 291.47702 * 16 15 14 35 35 H 1.08992 * 109.47297 * 300.00293 * 19 17 16 36 36 H 1.08998 * 109.47345 * 60.00964 * 19 17 16 37 37 H 1.09004 * 109.47092 * 300.00470 * 20 19 17 38 38 H 1.09004 * 109.47161 * 60.00103 * 20 19 17 39 39 H 1.08003 * 126.75538 * 0.03693 * 22 21 20 40 40 H 1.09001 * 113.46952 * 321.86856 * 27 13 11 41 41 H 1.09004 * 113.46955 * 92.25117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.9428 -9.4241 0.9914 18 8 6.0891 -8.9799 2.1105 19 6 6.8433 -10.5255 0.4943 20 6 7.8470 -10.8964 1.5880 21 6 8.7479 -11.9974 1.0908 22 6 8.5021 -13.3278 1.1277 23 7 9.5662 -13.9260 0.5806 24 7 10.4179 -13.0261 0.2352 25 7 9.9678 -11.8550 0.5229 26 1 10.4245 -11.0149 0.3602 27 6 2.7297 -7.8092 -0.0165 28 1 -0.4851 0.8400 -0.0004 29 1 3.1212 -3.7293 -0.8992 30 1 3.1279 -3.7332 0.8807 31 1 4.7224 -6.6035 -1.0299 32 1 4.8324 -5.7788 0.5838 33 1 4.0523 -7.8025 1.7636 34 1 4.8572 -9.2891 -0.7020 35 1 6.2430 -11.3993 0.2412 36 1 7.3799 -10.1844 -0.3910 37 1 8.4474 -10.0227 1.8416 38 1 7.3102 -11.2377 2.4732 39 1 7.6194 -13.8113 1.5196 40 1 1.9144 -8.1821 0.6034 41 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759227389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:34 Heat of formation + Delta-G solvation = 26.838356 kcal Electronic energy + Delta-G solvation = -24838.830692 eV Core-core repulsion = 20882.297233 eV Total energy + Delta-G solvation = -3956.533460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.26314 -41.73709 -40.41366 -38.89356 -35.41170 -34.94782 -34.60553 -34.11047 -31.93344 -30.93059 -28.98457 -27.67767 -26.97726 -26.05415 -23.97092 -23.16112 -22.39348 -21.47309 -20.44680 -19.54494 -19.21222 -18.20193 -18.02155 -17.72401 -17.00456 -16.96058 -16.88382 -16.53722 -16.19345 -15.81281 -15.33475 -15.26479 -15.02036 -14.58974 -14.49836 -14.14108 -13.91518 -13.80220 -13.59762 -13.24565 -13.19335 -13.15684 -12.87840 -12.70658 -12.64146 -12.26439 -12.18973 -11.77669 -11.75223 -11.56880 -11.17294 -11.14650 -10.88710 -10.32948 -10.13488 -10.10753 -9.84711 -8.70743 -8.36300 -6.15695 0.59021 1.15220 1.40129 1.43082 1.48073 1.52219 1.56654 1.63973 1.79804 1.92098 2.25413 2.36832 2.97862 3.13671 3.29085 3.48491 3.57965 3.72470 3.86685 3.91912 4.04037 4.07596 4.19239 4.26393 4.36364 4.40567 4.42996 4.52972 4.54993 4.59859 4.69900 4.81675 4.95181 5.06921 5.11568 5.24990 5.39439 5.45517 6.01656 6.17558 6.46952 6.59529 7.03159 7.04656 7.28327 7.46480 8.72717 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024726 B = 0.001560 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.156269 B =17939.621809 C =18778.701450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.119 4.119 11 C 0.565 3.435 12 O -0.564 6.564 13 N -0.652 5.652 14 C 0.085 3.915 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.519 3.481 18 O -0.579 6.579 19 C -0.127 4.127 20 C -0.028 4.028 21 C 0.010 3.990 22 C -0.055 4.055 23 N -0.306 5.306 24 N -0.116 5.116 25 N -0.375 5.375 26 H 0.462 0.538 27 C 0.096 3.904 28 H 0.272 0.728 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.423 0.577 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.214 0.786 40 H 0.076 0.924 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.292 -24.778 -1.320 32.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.270 4.270 11 C 0.354 3.646 12 O -0.442 6.442 13 N -0.388 5.388 14 C -0.038 4.038 15 C 0.021 3.979 16 N -0.354 5.354 17 C 0.307 3.693 18 O -0.458 6.458 19 C -0.167 4.167 20 C -0.068 4.068 21 C -0.125 4.125 22 C -0.213 4.213 23 N -0.172 5.172 24 N -0.096 5.096 25 N -0.098 5.098 26 H 0.311 0.689 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.262 0.738 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.231 0.769 40 H 0.095 0.905 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.473 -25.448 -1.129 32.064 hybrid contribution 0.672 2.329 0.002 2.424 sum 20.145 -23.120 -1.126 30.685 Atomic orbital electron populations 1.70170 1.07977 1.28763 1.47734 1.26125 0.95964 1.03288 0.93589 0.85002 0.77827 0.75643 0.79515 1.18549 1.20302 1.18724 1.23161 0.95340 0.91911 1.59293 0.89921 1.85571 1.10297 0.99210 1.97058 1.23266 1.03530 0.93845 1.06398 1.19534 0.84918 0.85317 0.74848 1.90701 1.16912 1.85500 1.51133 1.49206 1.09511 1.06640 1.73478 1.23864 0.79885 0.97159 1.02935 1.22434 0.89055 0.86581 0.99790 1.45634 1.32978 1.37570 1.19224 1.21145 0.80522 0.83077 0.84530 1.90772 1.71462 1.61848 1.21685 1.21670 0.97109 0.97873 1.00098 1.19869 0.94460 0.94125 0.98388 1.22425 0.88963 0.97962 1.03147 1.23987 1.00818 0.91210 1.05320 1.75097 1.02067 1.25716 1.14345 1.78281 1.22172 0.87622 1.21478 1.45216 1.14064 1.10337 1.40198 0.68943 1.23526 0.97650 0.78902 1.02589 0.91909 0.87435 0.87796 0.86441 0.89787 0.86658 0.73795 0.85563 0.86234 0.89208 0.87832 0.76941 0.90536 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.65 13.22 21.65 0.29 -55.36 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.29 9.50 67.95 0.65 -30.65 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.27 20.57 -56.49 -1.16 -9.44 16 10 C -0.12 -4.79 5.98 71.24 0.43 -4.37 16 11 C 0.56 21.20 8.10 87.66 0.71 21.91 16 12 O -0.56 -26.59 16.64 -3.02 -0.05 -26.64 16 13 N -0.65 -16.07 3.69 -857.80 -3.16 -19.24 16 14 C 0.09 1.25 8.25 83.26 0.69 1.93 16 15 C 0.13 1.56 4.62 45.56 0.21 1.77 16 16 N -0.70 -3.43 5.39 -441.47 -2.38 -5.81 16 17 C 0.52 3.89 7.83 87.66 0.69 4.58 16 18 O -0.58 -10.12 15.57 -3.05 -0.05 -10.17 16 19 C -0.13 0.02 5.68 29.85 0.17 0.19 16 20 C -0.03 -0.08 5.07 29.85 0.15 0.08 16 21 C 0.01 0.06 6.56 41.35 0.27 0.33 16 22 C -0.06 -0.54 11.99 83.73 1.00 0.46 16 23 N -0.31 -5.37 12.41 -58.26 -0.72 -6.09 16 24 N -0.12 -1.83 13.38 37.02 0.50 -1.33 16 25 N -0.37 -2.67 6.98 -47.79 -0.33 -3.01 16 26 H 0.46 0.00 8.96 -219.96 -1.97 -1.97 16 27 C 0.10 1.50 8.38 83.18 0.70 2.19 16 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 30 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 1.96 7.45 -2.39 -0.02 1.95 16 34 H 0.42 -0.82 8.76 -92.71 -0.81 -1.63 16 35 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.12 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.09 0.28 8.10 -2.39 -0.02 0.26 16 38 H 0.10 0.41 8.10 -2.39 -0.02 0.39 16 39 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -92.22 376.84 -0.62 -92.84 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -1.69 Total: -0.70 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 6.12 Total: -0.22 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -5.82 Total: -90.84 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.10 Total: -36.81 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.44 kcal Total: -92.22 -0.62 -92.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759227389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.675 kcal (2) G-P(sol) polarization free energy of solvation -92.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds