Wall clock time and date at job start Tue Mar 31 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33318 * 126.81503 * 2 1 4 4 N 1.28514 * 109.43967 * 179.97438 * 3 2 1 5 5 N 1.28719 * 110.63569 * 359.71338 * 4 3 2 6 6 H 0.97002 * 126.03100 * 180.28299 * 5 4 3 7 7 C 1.36999 * 126.81217 * 179.97438 * 2 1 3 8 8 C 1.47241 * 127.18998 * 0.02562 * 7 2 1 9 9 O 1.21620 * 119.99889 * 359.72204 * 8 7 2 10 10 N 1.34778 * 120.00059 * 180.02562 * 8 7 2 11 11 C 1.46501 * 120.00218 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47382 * 180.02562 * 11 10 8 13 13 C 1.30993 * 120.00685 * 127.15408 * 12 11 10 14 14 C 1.50702 * 119.99530 * 7.55999 * 13 12 11 15 15 N 1.46506 * 109.47536 * 127.00349 * 14 13 12 16 16 C 1.34767 * 120.00340 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00356 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00054 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47444 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00241 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00088 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00162 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99857 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00263 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47359 * 89.99869 * 24 22 20 26 26 H 1.48503 * 109.47423 * 209.99940 * 24 22 20 27 27 H 1.48503 * 109.47149 * 330.00142 * 24 22 20 28 28 H 1.08994 * 109.47327 * 270.02747 * 1 2 3 29 29 H 1.09001 * 109.46723 * 30.02484 * 1 2 3 30 30 H 1.08995 * 109.46633 * 150.02475 * 1 2 3 31 31 H 0.97001 * 119.99841 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46542 * 299.99777 * 11 10 8 33 33 H 1.08995 * 109.46771 * 59.99823 * 11 10 8 34 34 H 1.08008 * 119.99861 * 307.15752 * 12 11 10 35 35 H 1.08000 * 120.00895 * 187.55887 * 13 12 11 36 36 H 1.08999 * 109.47254 * 247.00680 * 14 13 12 37 37 H 1.09003 * 109.47356 * 7.00704 * 14 13 12 38 38 H 0.96998 * 119.99166 * 0.02562 * 15 14 13 39 39 H 1.08999 * 109.46990 * 299.99971 * 18 16 15 40 40 H 1.09005 * 109.47433 * 59.99514 * 18 16 15 41 41 H 0.97001 * 120.00055 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5325 0.6835 0.0005 5 7 3.6057 -0.6016 0.0069 6 1 4.4213 -1.1266 0.0125 7 6 2.3280 -1.0968 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 0.7421 -2.8065 0.0053 10 7 2.8584 -3.4817 0.0016 11 6 2.4547 -4.8900 0.0012 12 6 3.6820 -5.7644 0.0032 13 6 3.8166 -6.7024 0.9076 14 6 2.6747 -7.0214 1.8378 15 7 2.3900 -8.4577 1.7871 16 6 1.4009 -8.9757 2.5418 17 8 0.7467 -8.2531 3.2634 18 6 1.1085 -10.4531 2.4900 19 16 -0.2631 -10.8363 3.6072 20 6 -0.3877 -12.5755 3.3535 21 1 0.2824 -13.0703 2.6662 22 6 -1.3463 -13.3098 4.0379 23 7 -2.1627 -12.7067 4.8761 24 14 -1.4780 -15.1536 3.7695 25 1 -0.6031 -15.8589 4.7404 26 1 -2.8854 -15.5836 3.9684 27 1 -1.0500 -15.4843 2.3865 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5134 31 1 3.7996 -3.2470 0.0019 32 1 1.8597 -5.0976 0.8906 33 1 1.8617 -5.0976 -0.8894 34 1 4.4508 -5.6177 -0.7412 35 1 4.7458 -7.2472 0.9866 36 1 2.9457 -6.7405 2.8555 37 1 1.7894 -6.4646 1.5308 38 1 2.9134 -9.0357 1.2103 39 1 0.8380 -10.7345 1.4723 40 1 1.9937 -11.0098 2.7978 41 1 -2.8325 -13.2199 5.3546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759643659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:23 Heat of formation + Delta-G solvation = 42.080196 kcal Electronic energy + Delta-G solvation = -24769.697937 eV Core-core repulsion = 20813.825413 eV Total energy + Delta-G solvation = -3955.872524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.91163 -40.16137 -39.28858 -37.11054 -35.19997 -34.35012 -33.21328 -32.65001 -32.44563 -29.71402 -28.62380 -27.13152 -25.68025 -25.25435 -24.50442 -22.59592 -21.29684 -20.53388 -20.08095 -19.01395 -17.84812 -17.34744 -17.06134 -16.88875 -16.36080 -16.10345 -15.64272 -15.34879 -14.86253 -14.81743 -14.48873 -14.27001 -13.94968 -13.88945 -13.46785 -13.31329 -13.13723 -13.12943 -12.77027 -12.54862 -12.37530 -11.90127 -11.67907 -11.37383 -11.09338 -11.08040 -11.04416 -10.78717 -10.76546 -10.14004 -9.88671 -9.83858 -9.62744 -9.41821 -9.08816 -8.90922 -8.26144 -6.52378 -6.23419 -3.94376 0.31668 1.26605 1.74647 1.84780 2.49672 2.50174 3.02733 3.05160 3.20951 3.27176 3.31780 3.71109 3.73127 3.97879 4.12684 4.18505 4.30258 4.39759 4.50325 4.70331 5.02601 5.09152 5.11793 5.19594 5.26284 5.31578 5.35997 5.43876 5.48159 5.60038 5.70632 5.84606 5.87289 5.92922 5.99273 6.09314 6.11560 6.50273 6.67559 7.40987 7.57487 7.61350 7.72474 8.33233 8.53381 9.21831 10.83991 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.001584 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.210163 B =17675.607381 C =18444.842976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 N -0.268 5.268 4 N -0.042 5.042 5 N -0.376 5.376 6 H 0.450 0.550 7 C -0.075 4.075 8 C 0.595 3.405 9 O -0.501 6.501 10 N -0.721 5.721 11 C 0.134 3.866 12 C -0.170 4.170 13 C -0.134 4.134 14 C 0.132 3.868 15 N -0.736 5.736 16 C 0.531 3.469 17 O -0.515 6.515 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.395 0.605 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.851 20.669 -13.832 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 N -0.135 5.135 4 N -0.024 5.024 5 N -0.104 5.104 6 H 0.296 0.704 7 C -0.208 4.208 8 C 0.378 3.622 9 O -0.373 6.373 10 N -0.373 5.373 11 C 0.012 3.988 12 C -0.190 4.190 13 C -0.153 4.153 14 C 0.009 3.991 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.229 0.771 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.357 22.998 -12.481 30.340 hybrid contribution 1.761 -3.540 -1.303 4.163 sum 17.117 19.458 -13.784 29.353 Atomic orbital electron populations 1.20380 0.84523 1.04650 1.04211 1.22421 0.98808 0.86830 0.99244 1.74999 0.95103 1.25917 1.17480 1.78220 1.16141 0.92114 1.15886 1.45457 1.08703 1.07075 1.49123 0.70356 1.22049 0.85070 0.96371 1.17335 1.16696 0.86020 0.82116 0.77350 1.90906 1.16311 1.81692 1.48430 1.45801 1.09047 1.06534 1.75922 1.20685 0.95794 0.77787 1.04499 1.22804 0.98857 0.98558 0.98736 1.23083 0.98849 0.98525 0.94867 1.20508 0.96335 0.82911 0.99382 1.45932 1.37537 1.08147 1.47455 1.20353 0.78863 0.90181 0.78837 1.90718 1.48176 1.61349 1.38633 1.23530 1.06533 0.93705 1.06611 1.85427 1.36468 1.08670 1.52726 1.22864 1.22187 0.92715 1.30724 0.90911 1.24994 0.94655 0.99431 0.94495 1.70017 1.18624 1.36272 1.25305 0.86163 0.77604 0.83024 0.78668 1.20277 1.20727 1.19706 0.89563 0.90061 0.88594 0.77110 0.88915 0.89744 0.85852 0.85648 0.90542 0.90159 0.76673 0.89136 0.89172 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.93 36.01 0.36 -0.25 16 2 C 0.07 0.61 7.30 -82.39 -0.60 0.01 16 3 N -0.27 -2.76 12.35 33.51 0.41 -2.34 16 4 N -0.04 -0.36 13.35 60.35 0.81 0.44 16 5 N -0.38 -1.98 6.97 33.31 0.23 -1.75 16 6 H 0.45 0.34 8.32 -190.32 -1.58 -1.24 16 7 C -0.07 -0.56 7.17 -82.33 -0.59 -1.15 16 8 C 0.59 4.85 7.81 -12.60 -0.10 4.75 16 9 O -0.50 -5.91 14.99 5.26 0.08 -5.83 16 10 N -0.72 -3.69 5.54 -62.63 -0.35 -4.04 16 11 C 0.13 0.86 5.76 -5.20 -0.03 0.83 16 12 C -0.17 -0.76 9.62 -36.03 -0.35 -1.11 16 13 C -0.13 -0.77 9.63 -36.02 -0.35 -1.12 16 14 C 0.13 1.31 5.76 -5.19 -0.03 1.28 16 15 N -0.74 -8.84 5.55 -61.47 -0.34 -9.18 16 16 C 0.53 9.50 7.85 -10.99 -0.09 9.41 16 17 O -0.51 -11.43 15.86 5.56 0.09 -11.34 16 18 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 24 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.79 6.62 -51.93 -0.34 0.44 16 31 H 0.40 0.65 7.73 -40.82 -0.32 0.33 16 32 H 0.09 0.80 5.30 -51.93 -0.28 0.52 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.12 0.29 8.06 -52.48 -0.42 -0.13 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.89 5.30 -51.93 -0.27 0.62 16 38 H 0.40 3.55 8.46 -40.82 -0.35 3.21 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -38.68 374.05 -7.35 -46.03 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.06 Total: -1.78 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.35 Total: -2.95 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 1.50 Total: -42.14 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.17 Total: -17.17 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.68 -7.35 -46.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759643659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.115 kcal (2) G-P(sol) polarization free energy of solvation -38.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds