Wall clock time and date at job start Tue Mar 31 2020 22:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33318 * 126.81503 * 2 1 4 4 N 1.28514 * 109.43967 * 179.97438 * 3 2 1 5 5 N 1.28719 * 110.63569 * 359.71338 * 4 3 2 6 6 H 0.97002 * 126.03100 * 180.28299 * 5 4 3 7 7 C 1.36999 * 126.81217 * 179.97438 * 2 1 3 8 8 C 1.47241 * 127.18998 * 0.02562 * 7 2 1 9 9 O 1.21620 * 119.99889 * 359.72204 * 8 7 2 10 10 N 1.34778 * 120.00059 * 180.02562 * 8 7 2 11 11 C 1.46501 * 120.00218 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47382 * 180.02562 * 11 10 8 13 13 C 1.30993 * 120.00685 * 127.15408 * 12 11 10 14 14 C 1.50702 * 119.99530 * 7.55999 * 13 12 11 15 15 N 1.46506 * 109.47536 * 127.00349 * 14 13 12 16 16 C 1.34767 * 120.00340 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00356 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00054 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47444 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00241 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00088 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00162 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99857 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00263 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47359 * 89.99869 * 24 22 20 26 26 H 1.48503 * 109.47423 * 209.99940 * 24 22 20 27 27 H 1.48503 * 109.47149 * 330.00142 * 24 22 20 28 28 H 1.08994 * 109.47327 * 270.02747 * 1 2 3 29 29 H 1.09001 * 109.46723 * 30.02484 * 1 2 3 30 30 H 1.08995 * 109.46633 * 150.02475 * 1 2 3 31 31 H 0.97001 * 119.99841 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46542 * 299.99777 * 11 10 8 33 33 H 1.08995 * 109.46771 * 59.99823 * 11 10 8 34 34 H 1.08008 * 119.99861 * 307.15752 * 12 11 10 35 35 H 1.08000 * 120.00895 * 187.55887 * 13 12 11 36 36 H 1.08999 * 109.47254 * 247.00680 * 14 13 12 37 37 H 1.09003 * 109.47356 * 7.00704 * 14 13 12 38 38 H 0.96998 * 119.99166 * 0.02562 * 15 14 13 39 39 H 1.08999 * 109.46990 * 299.99971 * 18 16 15 40 40 H 1.09005 * 109.47433 * 59.99514 * 18 16 15 41 41 H 0.97001 * 120.00055 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5325 0.6835 0.0005 5 7 3.6057 -0.6016 0.0069 6 1 4.4213 -1.1266 0.0125 7 6 2.3280 -1.0968 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 0.7421 -2.8065 0.0053 10 7 2.8584 -3.4817 0.0016 11 6 2.4547 -4.8900 0.0012 12 6 3.6820 -5.7644 0.0032 13 6 3.8166 -6.7024 0.9076 14 6 2.6747 -7.0214 1.8378 15 7 2.3900 -8.4577 1.7871 16 6 1.4009 -8.9757 2.5418 17 8 0.7467 -8.2531 3.2634 18 6 1.1085 -10.4531 2.4900 19 16 -0.2631 -10.8363 3.6072 20 6 -0.3877 -12.5755 3.3535 21 1 0.2824 -13.0703 2.6662 22 6 -1.3463 -13.3098 4.0379 23 7 -2.1627 -12.7067 4.8761 24 14 -1.4780 -15.1536 3.7695 25 1 -0.6031 -15.8589 4.7404 26 1 -2.8854 -15.5836 3.9684 27 1 -1.0500 -15.4843 2.3865 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5134 31 1 3.7996 -3.2470 0.0019 32 1 1.8597 -5.0976 0.8906 33 1 1.8617 -5.0976 -0.8894 34 1 4.4508 -5.6177 -0.7412 35 1 4.7458 -7.2472 0.9866 36 1 2.9457 -6.7405 2.8555 37 1 1.7894 -6.4646 1.5308 38 1 2.9134 -9.0357 1.2103 39 1 0.8380 -10.7345 1.4723 40 1 1.9937 -11.0098 2.7978 41 1 -2.8325 -13.2199 5.3546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759643659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:22 Heat of formation + Delta-G solvation = 9.593357 kcal Electronic energy + Delta-G solvation = -24771.106672 eV Core-core repulsion = 20813.825413 eV Total energy + Delta-G solvation = -3957.281259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.53493 -40.87244 -40.56696 -37.84258 -36.01858 -35.07869 -34.58100 -34.02081 -33.34646 -31.07510 -29.29875 -27.94507 -27.58616 -26.20367 -25.13121 -23.22407 -21.95905 -21.80746 -20.70109 -19.99234 -19.35558 -18.10003 -17.85193 -17.65373 -17.43370 -16.92589 -16.86792 -16.73497 -16.35214 -15.87803 -15.60378 -15.12472 -14.91163 -14.78047 -14.51966 -14.38159 -14.10850 -14.04051 -13.73950 -13.52727 -13.17674 -13.16059 -13.03009 -12.88193 -12.60539 -12.33198 -11.97322 -11.72205 -11.71093 -11.46607 -11.13864 -11.08182 -10.64773 -10.46198 -10.30242 -10.26663 -9.85534 -8.66607 -8.34227 -6.12551 -0.30244 0.76758 1.06563 1.29146 1.36026 1.43097 1.49294 1.59247 1.60637 1.84888 1.96831 2.27671 2.45006 3.00053 3.13931 3.33559 3.43709 3.59291 3.74259 3.87476 3.92687 4.03504 4.09699 4.30421 4.40185 4.51881 4.55897 4.65058 4.69856 4.72397 4.87340 4.91845 5.06854 5.26690 5.35698 5.42326 5.47141 5.61961 5.69497 6.20112 6.20203 6.51129 6.85173 7.07075 7.08401 7.24552 8.74981 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.001584 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.210163 B =17675.607381 C =18444.842976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.297 5.297 4 N -0.052 5.052 5 N -0.346 5.346 6 H 0.470 0.530 7 C -0.071 4.071 8 C 0.597 3.403 9 O -0.543 6.543 10 N -0.700 5.700 11 C 0.129 3.871 12 C -0.143 4.143 13 C -0.138 4.138 14 C 0.127 3.873 15 N -0.707 5.707 16 C 0.531 3.469 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.156 6.156 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.257 1.257 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.416 0.584 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.056 19.562 -15.945 32.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 N -0.163 5.163 4 N -0.033 5.033 5 N -0.077 5.077 6 H 0.321 0.679 7 C -0.205 4.205 8 C 0.380 3.620 9 O -0.418 6.418 10 N -0.353 5.353 11 C 0.007 3.993 12 C -0.162 4.162 13 C -0.157 4.157 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.280 4.280 19 S 0.071 5.929 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.181 1.181 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.253 0.747 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.694 21.893 -14.644 32.299 hybrid contribution 0.875 -3.092 -0.716 3.293 sum 19.568 18.801 -15.360 31.182 Atomic orbital electron populations 1.20368 0.84132 1.04715 1.04332 1.22699 0.99507 0.87227 0.99704 1.74978 0.95705 1.26790 1.18816 1.78140 1.15686 0.93215 1.16301 1.45392 1.08938 1.06339 1.47027 0.67855 1.21880 0.85632 0.95803 1.17189 1.16755 0.85771 0.82564 0.76886 1.90895 1.18160 1.82244 1.50520 1.45587 1.09737 1.05618 1.74338 1.20649 0.96908 0.78649 1.03118 1.22938 0.98075 0.96764 0.98405 1.22952 0.98218 1.00078 0.94417 1.20629 0.97831 0.80933 1.00179 1.45654 1.35374 1.09573 1.45539 1.20111 0.79732 0.89258 0.79169 1.90706 1.50525 1.62136 1.41264 1.23371 1.03858 0.95456 1.05324 1.85630 1.41243 1.09726 1.56251 1.23213 1.22521 0.92762 1.30897 0.89755 1.26142 0.94042 1.05112 0.93925 1.70190 1.19538 1.38508 1.26593 0.84941 0.77719 0.75908 0.79329 1.19278 1.20429 1.18103 0.89435 0.89034 0.89412 0.74696 0.91439 0.90290 0.82071 0.82863 0.91777 0.91591 0.74343 0.87099 0.86932 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.93 71.24 0.71 -0.52 16 2 C 0.05 0.90 7.30 42.04 0.31 1.20 16 3 N -0.30 -6.03 12.35 -47.88 -0.59 -6.62 16 4 N -0.05 -0.83 13.35 37.02 0.49 -0.34 16 5 N -0.35 -3.01 6.97 -48.52 -0.34 -3.35 16 6 H 0.47 -0.66 8.32 -219.89 -1.83 -2.49 16 7 C -0.07 -1.00 7.17 40.41 0.29 -0.71 16 8 C 0.60 9.27 7.81 86.61 0.68 9.95 16 9 O -0.54 -13.10 14.99 -4.10 -0.06 -13.17 16 10 N -0.70 -5.69 5.54 -470.30 -2.61 -8.30 16 11 C 0.13 1.43 5.76 85.63 0.49 1.93 16 12 C -0.14 -0.71 9.62 25.65 0.25 -0.46 16 13 C -0.14 -1.08 9.63 25.65 0.25 -0.83 16 14 C 0.13 2.36 5.76 85.63 0.49 2.86 16 15 N -0.71 -15.70 5.55 -466.78 -2.59 -18.29 16 16 C 0.53 18.83 7.85 87.66 0.69 19.52 16 17 O -0.57 -26.07 15.86 -3.03 -0.05 -26.12 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 19 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 20 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.71 5.49 84.86 0.47 1.17 16 23 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 24 Si 1.00 43.20 29.55 68.60 2.03 45.22 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.54 6.62 -2.39 -0.02 1.52 16 31 H 0.42 -0.10 7.73 -92.71 -0.72 -0.82 16 32 H 0.07 1.16 5.30 -2.39 -0.01 1.14 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.16 -0.24 8.06 -2.91 -0.02 -0.26 16 35 H 0.15 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.47 5.30 -2.39 -0.01 1.46 16 38 H 0.42 6.05 8.46 -92.71 -0.78 5.27 16 39 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -89.42 374.05 -1.10 -90.52 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.21 Total: 6.53 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.70 Total: -0.63 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -5.35 Total: -92.60 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.11 Total: -39.29 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -89.42 -1.10 -90.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759643659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.113 kcal (2) G-P(sol) polarization free energy of solvation -89.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds