Wall clock time and date at job start Tue Mar 31 2020 22:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47419 * 179.97438 * 11 10 8 13 13 C 1.30996 * 119.99748 * 124.99635 * 12 11 10 14 14 C 1.50702 * 119.99748 * 180.02562 * 13 12 11 15 15 N 1.46496 * 109.47364 * 124.99831 * 14 13 12 16 16 C 1.34776 * 120.00250 * 179.97438 * 15 14 13 17 17 O 1.21285 * 119.99926 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00290 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47277 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99833 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00198 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00051 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00163 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46897 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47189 * 119.99926 * 24 22 20 27 27 H 1.48500 * 109.47053 * 239.99876 * 24 22 20 28 28 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 31 31 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 32 32 H 1.09008 * 109.46603 * 299.99251 * 11 10 8 33 33 H 1.09003 * 109.47132 * 59.98830 * 11 10 8 34 34 H 1.08000 * 120.00056 * 304.99364 * 12 11 10 35 35 H 1.08001 * 120.00585 * 0.02562 * 13 12 11 36 36 H 1.08999 * 109.47028 * 244.99956 * 14 13 12 37 37 H 1.09002 * 109.46825 * 4.99692 * 14 13 12 38 38 H 0.97004 * 120.00143 * 0.02562 * 15 14 13 39 39 H 1.09009 * 109.46846 * 300.00241 * 18 16 15 40 40 H 1.08998 * 109.46763 * 59.99536 * 18 16 15 41 41 H 0.97001 * 120.00247 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 6 3.6822 -5.7642 0.0317 13 6 3.8374 -6.6695 0.9658 14 6 5.0651 -7.5435 0.9714 15 7 5.7357 -7.4354 2.2693 16 6 6.8635 -8.1345 2.5055 17 8 7.3234 -8.8528 1.6433 18 6 7.5530 -8.0237 3.8410 19 16 9.0275 -9.0734 3.8476 20 6 9.6186 -8.7602 5.4777 21 1 9.0817 -8.0839 6.1262 22 6 10.7750 -9.3820 5.9279 23 7 11.4298 -10.2060 5.1373 24 14 11.4021 -9.0495 7.6558 25 1 10.4931 -8.0929 8.3367 26 1 11.4451 -10.3219 8.4202 27 1 12.7670 -8.4690 7.5839 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 3.7997 -3.2468 0.0187 32 1 1.8599 -5.0928 0.9170 33 1 1.8616 -5.1020 -0.8630 34 1 4.4338 -5.6446 -0.7346 35 1 3.0857 -6.7895 1.7319 36 1 4.7742 -8.5796 0.7979 37 1 5.7449 -7.2201 0.1831 38 1 5.3676 -6.8611 2.9591 39 1 7.8441 -6.9877 4.0147 40 1 6.8728 -8.3470 4.6289 41 1 12.2377 -10.6408 5.4521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759643661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:25 Heat of formation + Delta-G solvation = 1.824032 kcal Electronic energy + Delta-G solvation = -24430.992286 eV Core-core repulsion = 20473.374124 eV Total energy + Delta-G solvation = -3957.618162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.52057 -40.76458 -40.58054 -37.55945 -36.10741 -35.09168 -34.58810 -33.98595 -33.34929 -31.19628 -29.36746 -28.27143 -27.63167 -25.66382 -24.63609 -23.02554 -21.96682 -21.84101 -20.97537 -20.00076 -19.70667 -17.99940 -17.81248 -17.65166 -17.32559 -17.09242 -16.88346 -16.65063 -16.21691 -15.85854 -15.57296 -15.03184 -14.91042 -14.80329 -14.50355 -14.38551 -14.02771 -13.80487 -13.71961 -13.38872 -13.19135 -13.16137 -13.00019 -12.91579 -12.60597 -12.31205 -12.21697 -11.71419 -11.70449 -11.45401 -11.16354 -11.10486 -10.65668 -10.46018 -10.27142 -10.19509 -9.97652 -8.66753 -8.35388 -6.13133 -0.28146 0.78049 1.08596 1.29356 1.38417 1.41030 1.48988 1.59481 1.60937 1.87181 2.00349 2.26498 2.42957 2.99116 3.15720 3.32699 3.46136 3.54028 3.73488 3.91403 3.99432 4.02634 4.28434 4.32982 4.51894 4.53801 4.54916 4.59055 4.69067 4.75597 4.84065 4.91956 5.05694 5.28935 5.35832 5.42068 5.55779 5.60702 5.67495 6.19641 6.19906 6.50469 6.84025 7.06476 7.10389 7.24089 8.73960 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.001573 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.782078 B =17792.187159 C =19032.391713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 N -0.299 5.299 4 N -0.057 5.057 5 N -0.350 5.350 6 H 0.469 0.531 7 C -0.072 4.072 8 C 0.602 3.398 9 O -0.538 6.538 10 N -0.707 5.707 11 C 0.153 3.847 12 C -0.148 4.148 13 C -0.137 4.137 14 C 0.145 3.855 15 N -0.709 5.709 16 C 0.533 3.467 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.412 0.588 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.588 18.126 -10.423 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 N -0.165 5.165 4 N -0.038 5.038 5 N -0.080 5.080 6 H 0.319 0.681 7 C -0.207 4.207 8 C 0.386 3.614 9 O -0.414 6.414 10 N -0.359 5.359 11 C 0.030 3.970 12 C -0.168 4.168 13 C -0.156 4.156 14 C 0.022 3.978 15 N -0.364 5.364 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.869 17.958 -11.896 30.696 hybrid contribution 0.605 -0.309 1.992 2.104 sum -21.264 17.649 -9.904 29.355 Atomic orbital electron populations 1.20381 0.83712 1.04742 1.04502 1.22780 0.99674 0.87052 0.99688 1.74981 0.95711 1.26999 1.18771 1.78176 1.15821 0.93321 1.16525 1.45465 1.09199 1.06392 1.46985 0.68067 1.22003 0.85371 0.96224 1.17101 1.16615 0.85753 0.82240 0.76828 1.90858 1.17667 1.82152 1.50691 1.45741 1.09755 1.06137 1.74271 1.20436 0.95172 0.77559 1.03798 1.22889 0.98350 0.96106 0.99414 1.22874 0.96861 0.96168 0.99724 1.20403 0.92306 1.00046 0.85064 1.45708 1.25424 1.47667 1.17551 1.20058 0.80813 0.79031 0.88192 1.90703 1.65826 1.40321 1.47619 1.23380 1.01138 1.05493 0.98122 1.85583 1.26480 1.59533 1.20981 1.23242 1.13872 1.32618 0.99617 0.89861 1.26110 0.95753 0.94021 1.03234 1.70186 1.17768 1.28535 1.38269 0.84919 0.78177 0.78450 0.76491 1.18007 1.20013 1.20000 0.89021 0.89086 0.89349 0.75120 0.90089 0.89623 0.85088 0.84642 0.91451 0.91385 0.74544 0.87099 0.87205 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.94 71.24 0.71 -0.19 16 2 C 0.05 0.78 7.29 42.04 0.31 1.08 16 3 N -0.30 -5.79 12.35 -47.88 -0.59 -6.38 16 4 N -0.06 -0.93 13.35 37.02 0.49 -0.44 16 5 N -0.35 -3.10 6.97 -48.52 -0.34 -3.44 16 6 H 0.47 0.05 8.32 -219.90 -1.83 -1.78 16 7 C -0.07 -0.88 7.17 40.40 0.29 -0.59 16 8 C 0.60 6.98 7.81 86.61 0.68 7.66 16 9 O -0.54 -9.57 14.98 -4.10 -0.06 -9.63 16 10 N -0.71 -3.84 5.54 -470.29 -2.61 -6.44 16 11 C 0.15 0.90 6.11 85.63 0.52 1.42 16 12 C -0.15 -0.79 9.24 25.65 0.24 -0.55 16 13 C -0.14 -1.11 9.24 25.65 0.24 -0.87 16 14 C 0.14 2.38 6.11 85.63 0.52 2.90 16 15 N -0.71 -14.51 5.55 -466.78 -2.59 -17.10 16 16 C 0.53 17.86 7.85 87.66 0.69 18.55 16 17 O -0.57 -24.62 15.86 -3.05 -0.05 -24.67 16 18 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 19 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 20 C -0.55 -30.39 9.50 67.95 0.65 -29.74 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.06 13.22 21.65 0.29 -54.77 16 24 Si 1.00 42.70 29.55 68.60 2.03 44.73 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.17 6.60 -2.39 -0.02 1.15 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.41 -0.03 7.73 -92.70 -0.72 -0.75 16 32 H 0.08 0.55 7.79 -2.38 -0.02 0.53 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.13 0.54 7.84 -2.91 -0.02 0.51 16 35 H 0.14 0.77 7.84 -2.91 -0.02 0.75 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.21 7.79 -2.39 -0.02 1.20 16 38 H 0.42 5.64 8.46 -92.71 -0.78 4.86 16 39 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -84.95 378.52 -1.07 -86.02 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.22 Total: 4.99 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.74 Total: -3.47 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -5.35 Total: -88.57 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.11 Total: -34.30 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -84.95 -1.07 -86.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759643661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.845 kcal (2) G-P(sol) polarization free energy of solvation -84.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds