Wall clock time and date at job start Tue Mar 31 2020 22:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48497 * 109.46756 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46906 * 119.99994 * 3 2 1 6 6 H 1.48494 * 109.47569 * 240.00144 * 3 2 1 7 7 C 1.40300 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00234 * 159.68798 * 7 2 1 9 9 C 1.40861 * 119.99911 * 339.67884 * 7 2 1 10 10 C 1.40703 * 120.33362 * 325.74373 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46944 * 180.02562 * 18 17 15 20 20 O 1.21286 * 120.00131 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00038 * 180.02562 * 19 18 17 22 22 C 1.46505 * 120.00043 * 180.02562 * 21 19 18 23 23 C 1.50699 * 109.46974 * 179.97438 * 22 21 19 24 24 C 1.38232 * 120.00042 * 269.72626 * 23 22 21 25 25 C 1.38241 * 119.99763 * 179.76745 * 24 23 22 26 26 C 1.38234 * 119.99960 * 0.50682 * 25 24 23 27 27 C 1.38234 * 119.99960 * 359.74659 * 26 25 24 28 28 C 1.38234 * 119.99819 * 90.00054 * 23 22 21 29 29 H 0.97001 * 119.99997 * 175.29054 * 1 2 3 30 30 H 1.07997 * 120.05864 * 359.95450 * 10 9 7 31 31 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 34 34 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 35 35 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 36 36 H 0.97003 * 120.00105 * 359.97438 * 21 19 18 37 37 H 1.08999 * 109.46893 * 299.99457 * 22 21 19 38 38 H 1.09000 * 109.47291 * 59.99941 * 22 21 19 39 39 H 1.07995 * 120.00082 * 359.97438 * 24 23 22 40 40 H 1.07992 * 119.99968 * 180.23392 * 25 24 23 41 41 H 1.08001 * 120.00299 * 179.72876 * 26 25 24 42 42 H 1.08005 * 119.99804 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00266 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 1.2751 2.7464 0.0006 5 1 3.0939 1.6963 1.2125 6 1 3.0938 1.6965 -1.2124 7 6 2.0076 -1.2150 -0.0005 8 1 3.0372 -1.2440 -0.3252 9 6 1.3690 -2.3971 0.4226 10 6 0.4103 -2.3577 1.4516 11 6 -0.2082 -3.5179 1.8574 12 6 0.1052 -4.7315 1.2603 13 6 1.0440 -4.7979 0.2483 14 6 1.6837 -3.6400 -0.1879 15 6 2.6805 -3.7048 -1.2703 16 8 3.1664 -2.6817 -1.7108 17 8 3.0538 -4.8989 -1.7723 18 6 4.0409 -4.8868 -2.8371 19 6 4.3313 -6.3011 -3.2688 20 8 3.7628 -7.2280 -2.7315 21 7 5.2237 -6.5360 -4.2511 22 6 5.5057 -7.9110 -4.6711 23 6 6.5302 -7.8985 -5.7762 24 6 6.1231 -7.8301 -7.0954 25 6 7.0632 -7.8138 -8.1089 26 6 8.4099 -7.8764 -7.8035 27 6 8.8168 -7.9500 -6.4844 28 6 7.8770 -7.9611 -5.4708 29 1 -0.4850 -0.8372 -0.0690 30 1 0.1605 -1.4184 1.9225 31 1 -0.9434 -3.4843 2.6478 32 1 -0.3890 -5.6331 1.5908 33 1 1.2786 -5.7482 -0.2083 34 1 3.6542 -4.3208 -3.6846 35 1 4.9581 -4.4208 -2.4770 36 1 5.6787 -5.7948 -4.6805 37 1 5.8915 -8.4778 -3.8239 38 1 4.5883 -8.3761 -5.0320 39 1 5.0708 -7.7861 -7.3342 40 1 6.7453 -7.7566 -9.1394 41 1 9.1442 -7.8681 -8.5954 42 1 9.8690 -7.9994 -6.2458 43 1 8.1949 -8.0185 -4.4402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022558334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:51 Heat of formation + Delta-G solvation = -82.818638 kcal Electronic energy + Delta-G solvation = -27160.849084 eV Core-core repulsion = 23135.364181 eV Total energy + Delta-G solvation = -4025.484903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.20446 -39.59640 -38.92181 -37.43399 -35.43863 -35.03089 -33.97865 -31.90791 -31.32016 -30.33990 -29.50372 -28.66061 -26.00666 -25.26401 -22.99657 -22.80345 -21.70179 -21.09818 -20.70373 -19.88289 -18.14921 -17.66361 -17.06476 -16.63811 -16.28417 -16.00115 -15.64633 -15.54140 -15.16442 -14.73617 -14.58763 -14.16693 -13.99491 -13.83049 -13.72169 -13.34759 -13.07214 -12.97081 -12.87178 -12.57928 -12.29309 -12.06764 -11.77541 -11.49402 -11.44509 -11.21847 -10.98769 -10.76762 -10.43958 -10.24839 -10.13540 -10.01405 -9.75526 -9.36579 -9.29065 -9.22711 -9.15729 -8.93871 -7.86875 -7.68880 -7.28829 -4.59656 0.80851 0.97896 2.06739 2.54485 2.65072 2.71807 3.14086 3.25312 3.34564 3.38317 3.73793 3.84718 3.96028 4.24360 4.44189 4.52705 4.59480 4.68221 4.73814 4.95651 5.06750 5.25100 5.29690 5.31489 5.36873 5.37967 5.57894 5.63018 5.93462 6.01436 6.04581 6.09229 6.14776 6.17029 6.19843 6.42347 6.55344 6.73440 6.90884 7.09298 7.25786 7.29528 7.46696 7.54120 7.71517 7.79401 8.03532 8.09689 8.11916 8.59309 8.70938 8.93893 9.92163 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002162 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.545505 B =12945.803341 C =14326.891724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.032 3.968 3 Si 1.071 2.929 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.123 3.877 10 C -0.202 4.202 11 C -0.069 4.069 12 C -0.260 4.260 13 C -0.021 4.021 14 C -0.254 4.254 15 C 0.505 3.495 16 O -0.515 6.515 17 O -0.346 6.346 18 C 0.052 3.948 19 C 0.517 3.483 20 O -0.515 6.515 21 N -0.729 5.729 22 C 0.163 3.837 23 C -0.108 4.108 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.123 4.123 28 C -0.100 4.100 29 H 0.300 0.700 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.653 -11.117 -12.931 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.191 4.191 3 Si 0.894 3.106 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.122 0.878 9 C 0.118 3.882 10 C -0.220 4.220 11 C -0.088 4.088 12 C -0.279 4.279 13 C -0.039 4.039 14 C -0.257 4.257 15 C 0.356 3.644 16 O -0.406 6.406 17 O -0.264 6.264 18 C -0.026 4.026 19 C 0.303 3.697 20 O -0.388 6.388 21 N -0.384 5.384 22 C 0.040 3.960 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.141 4.141 28 C -0.119 4.119 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.103 -9.864 -12.614 20.691 hybrid contribution 0.484 -1.407 -0.453 1.555 sum 13.587 -11.270 -13.067 21.963 Atomic orbital electron populations 1.70382 1.08246 1.34492 1.27538 1.27320 0.95676 1.04742 0.91370 0.83548 0.75591 0.73171 0.78322 1.19776 1.19815 1.19724 1.21186 1.01847 0.92188 1.33955 0.87812 1.17457 0.89844 0.91508 0.89355 1.21187 1.03181 0.97300 1.00376 1.20820 0.97213 0.93139 0.97580 1.20354 1.06233 0.96796 1.04520 1.20986 0.92851 0.96332 0.93740 1.18624 1.07905 0.95806 1.03372 1.21435 0.81266 0.79800 0.81938 1.90740 1.54950 1.34506 1.60393 1.86684 1.55299 1.35559 1.48822 1.22348 0.94247 0.93797 0.92257 1.20346 0.79009 0.91010 0.79352 1.90745 1.49007 1.45351 1.53740 1.45901 1.44652 1.08873 1.38994 1.20171 0.97037 0.83609 0.95138 1.19901 0.94228 1.02432 0.94309 1.21159 1.00003 0.98605 0.92080 1.21195 0.93167 1.00291 0.99389 1.21246 0.96080 0.99196 0.96651 1.21195 0.99685 1.00304 0.92866 1.21156 0.92302 0.98669 0.99727 0.88611 0.87280 0.88574 0.88474 0.87438 0.88786 0.88783 0.76261 0.90418 0.90432 0.85686 0.85809 0.85955 0.85810 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.47 12.60 55.57 0.70 -19.77 16 2 C 0.03 0.80 5.01 -17.30 -0.09 0.71 16 3 Si 1.07 21.67 29.98 -169.99 -5.10 16.57 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.47 -12.48 7.62 -37.81 -0.29 -12.77 16 8 H 0.10 2.86 5.99 -52.49 -0.31 2.55 16 9 C 0.12 3.25 5.16 -106.54 -0.55 2.70 16 10 C -0.20 -4.97 7.90 -38.88 -0.31 -5.28 16 11 C -0.07 -1.52 10.01 -39.59 -0.40 -1.92 16 12 C -0.26 -5.68 10.03 -39.37 -0.39 -6.07 16 13 C -0.02 -0.48 9.60 -39.20 -0.38 -0.85 16 14 C -0.25 -6.46 5.92 -104.39 -0.62 -7.07 16 15 C 0.50 12.21 7.85 34.41 0.27 12.48 16 16 O -0.52 -13.11 13.38 -19.28 -0.26 -13.37 16 17 O -0.35 -7.34 9.02 -47.46 -0.43 -7.76 16 18 C 0.05 0.82 5.96 36.00 0.21 1.04 16 19 C 0.52 7.62 7.91 -10.99 -0.09 7.54 16 20 O -0.51 -9.72 16.50 -14.11 -0.23 -9.95 16 21 N -0.73 -7.54 5.55 -61.47 -0.34 -7.88 16 22 C 0.16 1.53 5.80 -5.19 -0.03 1.50 16 23 C -0.11 -0.86 5.25 -104.63 -0.55 -1.41 16 24 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 26 C -0.11 -0.72 10.05 -39.58 -0.40 -1.12 16 27 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 28 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 29 H 0.30 8.04 6.62 -40.82 -0.27 7.77 16 30 H 0.11 2.70 6.99 -52.49 -0.37 2.34 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.11 2.34 7.61 -52.49 -0.40 1.94 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 3.22 8.46 -40.82 -0.35 2.87 16 37 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -32.14 376.43 -10.28 -42.42 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.14 Total: 9.26 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -5.16 Total: -15.20 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.36 Total: -27.65 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.92 Total: -31.09 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.10 Total: 16.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.14 -10.28 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022558334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.397 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds