Wall clock time and date at job start Tue Mar 31 2020 22:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48497 * 109.46756 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46906 * 119.99994 * 3 2 1 6 6 H 1.48494 * 109.47569 * 240.00144 * 3 2 1 7 7 C 1.40300 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00234 * 159.68798 * 7 2 1 9 9 C 1.40861 * 119.99911 * 339.67884 * 7 2 1 10 10 C 1.40703 * 120.33362 * 325.74373 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46944 * 180.02562 * 18 17 15 20 20 O 1.21286 * 120.00131 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00038 * 180.02562 * 19 18 17 22 22 C 1.46505 * 120.00043 * 180.02562 * 21 19 18 23 23 C 1.50699 * 109.46974 * 179.97438 * 22 21 19 24 24 C 1.38232 * 120.00042 * 269.72626 * 23 22 21 25 25 C 1.38241 * 119.99763 * 179.76745 * 24 23 22 26 26 C 1.38234 * 119.99960 * 0.50682 * 25 24 23 27 27 C 1.38234 * 119.99960 * 359.74659 * 26 25 24 28 28 C 1.38234 * 119.99819 * 90.00054 * 23 22 21 29 29 H 0.97001 * 119.99997 * 175.29054 * 1 2 3 30 30 H 1.07997 * 120.05864 * 359.95450 * 10 9 7 31 31 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 34 34 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 35 35 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 36 36 H 0.97003 * 120.00105 * 359.97438 * 21 19 18 37 37 H 1.08999 * 109.46893 * 299.99457 * 22 21 19 38 38 H 1.09000 * 109.47291 * 59.99941 * 22 21 19 39 39 H 1.07995 * 120.00082 * 359.97438 * 24 23 22 40 40 H 1.07992 * 119.99968 * 180.23392 * 25 24 23 41 41 H 1.08001 * 120.00299 * 179.72876 * 26 25 24 42 42 H 1.08005 * 119.99804 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00266 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 1.2751 2.7464 0.0006 5 1 3.0939 1.6963 1.2125 6 1 3.0938 1.6965 -1.2124 7 6 2.0076 -1.2150 -0.0005 8 1 3.0372 -1.2440 -0.3252 9 6 1.3690 -2.3971 0.4226 10 6 0.4103 -2.3577 1.4516 11 6 -0.2082 -3.5179 1.8574 12 6 0.1052 -4.7315 1.2603 13 6 1.0440 -4.7979 0.2483 14 6 1.6837 -3.6400 -0.1879 15 6 2.6805 -3.7048 -1.2703 16 8 3.1664 -2.6817 -1.7108 17 8 3.0538 -4.8989 -1.7723 18 6 4.0409 -4.8868 -2.8371 19 6 4.3313 -6.3011 -3.2688 20 8 3.7628 -7.2280 -2.7315 21 7 5.2237 -6.5360 -4.2511 22 6 5.5057 -7.9110 -4.6711 23 6 6.5302 -7.8985 -5.7762 24 6 6.1231 -7.8301 -7.0954 25 6 7.0632 -7.8138 -8.1089 26 6 8.4099 -7.8764 -7.8035 27 6 8.8168 -7.9500 -6.4844 28 6 7.8770 -7.9611 -5.4708 29 1 -0.4850 -0.8372 -0.0690 30 1 0.1605 -1.4184 1.9225 31 1 -0.9434 -3.4843 2.6478 32 1 -0.3890 -5.6331 1.5908 33 1 1.2786 -5.7482 -0.2083 34 1 3.6542 -4.3208 -3.6846 35 1 4.9581 -4.4208 -2.4770 36 1 5.6787 -5.7948 -4.6805 37 1 5.8915 -8.4778 -3.8239 38 1 4.5883 -8.3761 -5.0320 39 1 5.0708 -7.7861 -7.3342 40 1 6.7453 -7.7566 -9.1394 41 1 9.1442 -7.8681 -8.5954 42 1 9.8690 -7.9994 -6.2458 43 1 8.1949 -8.0185 -4.4402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022558334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:50 Heat of formation + Delta-G solvation = -99.505275 kcal Electronic energy + Delta-G solvation = -27161.572671 eV Core-core repulsion = 23135.364181 eV Total energy + Delta-G solvation = -4026.208490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54979 -40.80660 -39.96126 -39.22397 -37.14469 -36.08890 -35.84910 -32.73923 -32.10867 -31.82692 -31.36055 -29.91283 -27.38075 -26.66548 -24.56837 -23.51026 -22.95865 -22.31509 -21.90262 -21.63344 -19.97461 -18.81114 -18.53047 -17.67794 -17.55604 -17.41361 -16.78999 -16.53510 -16.51612 -16.01040 -15.88480 -15.69516 -15.60818 -15.15078 -14.61667 -14.47515 -14.33129 -14.17452 -13.95554 -13.87337 -13.59949 -13.50345 -13.43705 -12.99634 -12.74363 -12.52591 -12.09927 -12.04732 -11.96356 -11.95134 -11.76954 -11.63025 -11.21729 -11.00000 -10.82052 -10.31261 -9.86076 -9.80943 -9.75130 -9.59210 -9.23262 -6.57854 0.18536 0.23616 0.46234 0.86273 1.34438 1.39444 1.49198 1.63266 1.79327 1.87370 2.29456 2.40469 2.65464 2.90311 3.43823 3.54345 3.63929 3.88458 4.02491 4.02891 4.12280 4.20570 4.27603 4.28121 4.33098 4.41391 4.55227 4.63323 4.70825 4.74128 4.86843 5.02492 5.03247 5.12871 5.17820 5.28598 5.41301 5.51421 5.57594 5.59377 5.60807 5.65759 5.79052 5.89855 6.04916 6.12057 6.23625 6.29880 6.66519 6.76344 6.98617 7.10026 7.95128 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002162 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.545505 B =12945.803341 C =14326.891724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.000 4.000 3 Si 1.117 2.883 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.266 1.266 7 C -0.501 4.501 8 H 0.087 0.913 9 C 0.101 3.899 10 C -0.220 4.220 11 C -0.061 4.061 12 C -0.248 4.248 13 C -0.028 4.028 14 C -0.280 4.280 15 C 0.507 3.493 16 O -0.535 6.535 17 O -0.353 6.353 18 C 0.043 3.957 19 C 0.525 3.475 20 O -0.561 6.561 21 N -0.705 5.705 22 C 0.165 3.835 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.129 4.129 26 C -0.116 4.116 27 C -0.129 4.129 28 C -0.109 4.109 29 H 0.285 0.715 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.417 0.583 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.648 -11.886 -13.649 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.217 4.217 3 Si 0.934 3.066 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.105 0.895 9 C 0.097 3.903 10 C -0.239 4.239 11 C -0.079 4.079 12 C -0.266 4.266 13 C -0.046 4.046 14 C -0.283 4.283 15 C 0.358 3.642 16 O -0.428 6.428 17 O -0.271 6.271 18 C -0.034 4.034 19 C 0.310 3.690 20 O -0.439 6.439 21 N -0.359 5.359 22 C 0.043 3.957 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.147 4.147 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.127 4.127 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.130 -10.661 -13.368 22.181 hybrid contribution 0.233 -1.426 -0.318 1.479 sum 14.363 -12.086 -13.685 23.231 Atomic orbital electron populations 1.70493 1.08690 1.33385 1.29920 1.28603 0.95756 1.07447 0.89890 0.83004 0.74839 0.69679 0.79096 1.18878 1.18205 1.19099 1.21183 1.01500 0.93508 1.36556 0.89529 1.17826 0.90541 0.92072 0.89875 1.21210 1.04003 0.98100 1.00622 1.21224 0.96774 0.92237 0.97684 1.20826 1.04824 0.98050 1.02933 1.21210 0.93024 0.96128 0.94271 1.19009 1.08787 0.96391 1.04074 1.21313 0.80923 0.80217 0.81732 1.90714 1.55659 1.35397 1.61026 1.86615 1.56460 1.33835 1.50170 1.22741 0.93863 0.95329 0.91462 1.20119 0.79288 0.89779 0.79780 1.90728 1.51163 1.46248 1.55723 1.45753 1.42828 1.10177 1.37177 1.20208 0.97416 0.82483 0.95600 1.19758 0.94051 1.03958 0.93960 1.21304 1.00615 0.98750 0.92104 1.21462 0.93280 0.99822 1.00095 1.21575 0.96489 0.98121 0.97197 1.21466 1.00514 0.99797 0.92859 1.21305 0.92242 0.98763 1.00420 0.90221 0.88168 0.84924 0.84737 0.86174 0.87240 0.87035 0.74602 0.90789 0.90857 0.85244 0.84102 0.83883 0.84058 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.97 12.60 21.88 0.28 -42.70 16 2 C 0.00 0.01 5.01 85.38 0.43 0.44 16 3 Si 1.12 44.10 29.98 68.60 2.06 46.16 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.50 -27.82 7.62 23.41 0.18 -27.64 16 8 H 0.09 4.99 5.99 -2.91 -0.02 4.98 16 9 C 0.10 5.47 5.16 -21.10 -0.11 5.37 16 10 C -0.22 -10.97 7.90 22.72 0.18 -10.79 16 11 C -0.06 -2.58 10.01 22.26 0.22 -2.36 16 12 C -0.25 -10.20 10.03 22.41 0.22 -9.98 16 13 C -0.03 -1.27 9.60 22.52 0.22 -1.06 16 14 C -0.28 -14.43 5.92 -19.71 -0.12 -14.55 16 15 C 0.51 25.00 7.85 70.20 0.55 25.56 16 16 O -0.54 -27.97 13.38 19.75 0.26 -27.71 16 17 O -0.35 -15.10 9.02 -50.76 -0.46 -15.55 16 18 C 0.04 1.36 5.96 71.23 0.42 1.78 16 19 C 0.52 15.24 7.91 87.66 0.69 15.94 16 20 O -0.56 -21.27 16.50 15.75 0.26 -21.01 16 21 N -0.70 -13.91 5.55 -466.78 -2.59 -16.50 16 22 C 0.17 2.99 5.80 85.63 0.50 3.49 16 23 C -0.12 -1.72 5.25 -19.87 -0.10 -1.83 16 24 C -0.11 -1.47 9.70 22.27 0.22 -1.25 16 25 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 26 C -0.12 -1.20 10.05 22.27 0.22 -0.97 16 27 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 28 C -0.11 -1.45 9.70 22.27 0.22 -1.23 16 29 H 0.29 15.85 6.62 -92.71 -0.61 15.23 16 30 H 0.10 5.08 6.99 -2.91 -0.02 5.06 16 31 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.12 5.10 7.61 -2.91 -0.02 5.08 16 34 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.42 6.03 8.46 -92.71 -0.78 5.25 16 37 H 0.07 1.42 8.09 -2.39 -0.02 1.41 16 38 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 39 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 42 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -71.33 376.43 4.62 -66.71 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.42 Total: 32.12 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 4.39 Total: -21.52 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -2.31 Total: -59.20 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: 0.07 Total: -64.27 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.06 Total: 46.16 kcal Total: -71.33 4.62 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022558334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.791 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds