Wall clock time and date at job start Tue Mar 31 2020 22:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00497 * 2 1 4 4 H 1.48489 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46935 * 300.00237 * 3 2 1 6 6 H 1.48502 * 109.46920 * 60.00030 * 3 2 1 7 7 C 1.39941 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99675 * 197.89244 * 7 2 1 9 9 C 1.41437 * 119.99919 * 17.88949 * 7 2 1 10 10 C 1.40792 * 120.17502 * 204.44085 * 9 7 2 11 11 C 1.37712 * 120.03746 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41406 * 359.68703 * 11 10 9 13 13 C 1.39884 * 120.35393 * 0.56940 * 12 11 10 14 14 C 1.47890 * 120.02106 * 179.73894 * 13 12 11 15 15 O 1.21547 * 119.99600 * 179.72538 * 14 13 12 16 16 N 1.34776 * 120.00225 * 359.71891 * 14 13 12 17 17 C 1.46495 * 120.00154 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47416 * 180.02562 * 17 16 14 19 19 C 1.38250 * 119.94223 * 90.00269 * 18 17 16 20 20 C 1.38206 * 120.11010 * 179.75851 * 19 18 17 21 21 C 1.38696 * 120.06719 * 0.23926 * 20 19 18 22 22 C 1.38972 * 119.82207 * 359.94556 * 21 20 19 23 23 C 1.38197 * 119.94243 * 270.25702 * 18 17 16 24 24 O 1.36113 * 120.78706 * 180.20856 * 22 21 20 25 25 C 1.43176 * 116.69348 * 342.71770 * 24 22 21 26 26 C 1.53470 * 108.23940 * 46.24960 * 25 24 22 27 27 O 1.36115 * 119.39715 * 179.80400 * 21 20 19 28 28 C 1.39027 * 119.95158 * 359.45889 * 13 12 11 29 29 H 0.97006 * 119.99818 * 359.97438 * 1 2 3 30 30 H 1.07992 * 119.97827 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.79268 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.82599 * 180.28367 * 12 11 10 33 33 H 0.97001 * 119.99903 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47155 * 60.00360 * 17 16 14 35 35 H 1.09001 * 109.47283 * 300.00784 * 17 16 14 36 36 H 1.07993 * 119.94859 * 0.02904 * 19 18 17 37 37 H 1.07998 * 119.96412 * 180.26495 * 20 19 18 38 38 H 1.07992 * 119.97067 * 0.03362 * 23 18 17 39 39 H 1.08999 * 109.71455 * 286.56580 * 25 24 22 40 40 H 1.08997 * 109.71223 * 165.93956 * 25 24 22 41 41 H 1.08996 * 109.70921 * 180.57023 * 26 25 24 42 42 H 1.09003 * 109.73682 * 59.97026 * 26 25 24 43 43 H 1.08002 * 120.20363 * 180.22620 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7023 1.3462 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0487 -1.2347 0.2868 9 6 1.3519 -2.4070 -0.3773 10 6 1.8261 -3.6501 0.0833 11 6 1.1855 -4.8119 -0.2858 12 6 0.0706 -4.7676 -1.1042 13 6 -0.4117 -3.5422 -1.5759 14 6 -1.6005 -3.5038 -2.4548 15 8 -2.0222 -2.4384 -2.8604 16 7 -2.2161 -4.6500 -2.8062 17 6 -3.3940 -4.6119 -3.6765 18 6 -3.8881 -6.0155 -3.9149 19 6 -4.8226 -6.5723 -3.0617 20 6 -5.2819 -7.8574 -3.2799 21 6 -4.8025 -8.5938 -4.3530 22 6 -3.8602 -8.0355 -5.2085 23 6 -3.4024 -6.7457 -4.9829 24 8 -3.3796 -8.7389 -6.2700 25 6 -3.5802 -10.1563 -6.2462 26 6 -5.0369 -10.4287 -5.8473 27 8 -5.2612 -9.8596 -4.5529 28 6 0.2237 -2.3600 -1.2131 29 1 -0.4850 0.8401 0.0004 30 1 2.6926 -3.6924 0.7264 31 1 1.5528 -5.7634 0.0695 32 1 -0.4272 -5.6843 -1.3840 33 1 -1.8797 -5.5002 -2.4823 34 1 -3.1274 -4.1536 -4.6288 35 1 -4.1798 -4.0266 -3.1989 36 1 -5.1977 -6.0005 -2.2258 37 1 -6.0152 -8.2885 -2.6144 38 1 -2.6689 -6.3101 -5.6452 39 1 -2.9085 -10.6106 -5.5177 40 1 -3.3859 -10.5717 -7.2350 41 1 -5.2134 -11.5037 -5.8119 42 1 -5.7090 -9.9695 -6.5722 43 1 -0.1474 -1.4114 -1.5720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042346908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:41 Heat of formation + Delta-G solvation = -66.078203 kcal Electronic energy + Delta-G solvation = -27543.674723 eV Core-core repulsion = 23518.915740 eV Total energy + Delta-G solvation = -4024.758983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53546 -39.32971 -38.19604 -37.54596 -36.93853 -34.38352 -33.69476 -31.63419 -31.07747 -30.13612 -29.42625 -28.97408 -26.24799 -25.24827 -24.49944 -22.94893 -22.13180 -20.97402 -20.67991 -19.54786 -18.89717 -17.88321 -17.53769 -17.34842 -16.24853 -15.74546 -15.50093 -15.38402 -15.05097 -14.89248 -14.70634 -14.68696 -14.20957 -14.10753 -14.00994 -13.60513 -13.37139 -13.12980 -12.64855 -12.46527 -12.45541 -11.98109 -11.82073 -11.62129 -11.44488 -11.42174 -11.14789 -11.06073 -10.77508 -10.71734 -10.47280 -10.01681 -9.67242 -9.20898 -9.11505 -8.82959 -8.65487 -8.28652 -7.61391 -7.50366 -6.78965 -4.39816 0.95846 1.07421 2.22726 2.66957 2.82134 2.88511 3.09112 3.14022 3.16236 3.33744 3.84089 3.88425 3.93358 3.96755 4.32387 4.40069 4.49131 4.61720 4.65189 4.79178 4.97912 5.04424 5.12464 5.15307 5.41882 5.61018 5.62195 5.75378 5.86187 5.90025 5.95375 6.11517 6.29863 6.32495 6.41419 6.58197 6.73357 6.84534 7.00299 7.03643 7.11293 7.22800 7.39773 7.72052 7.77776 7.94362 8.11149 8.20734 8.52323 8.81722 8.85021 8.96306 10.15768 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002108 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.281957 B =13279.242192 C =13710.417948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.127 4.127 14 C 0.564 3.436 15 O -0.546 6.546 16 N -0.733 5.733 17 C 0.165 3.835 18 C -0.096 4.096 19 C -0.094 4.094 20 C -0.115 4.115 21 C 0.052 3.948 22 C 0.047 3.953 23 C -0.093 4.093 24 O -0.307 6.307 25 C 0.020 3.980 26 C 0.020 3.980 27 O -0.308 6.308 28 C -0.093 4.093 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 -17.995 -10.062 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.130 4.130 14 C 0.355 3.645 15 O -0.424 6.424 16 N -0.388 5.388 17 C 0.042 3.958 18 C -0.097 4.097 19 C -0.113 4.113 20 C -0.133 4.133 21 C 0.007 3.993 22 C 0.002 3.998 23 C -0.112 4.112 24 O -0.221 6.221 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.223 6.223 28 C -0.113 4.113 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.817 -17.098 -10.386 22.742 hybrid contribution 0.409 -0.073 0.063 0.421 sum -10.407 -17.171 -10.323 22.577 Atomic orbital electron populations 1.69803 1.07573 1.29662 1.33670 1.25972 0.94773 1.01563 0.92328 0.86239 0.80886 0.80844 0.78672 1.18350 1.19548 1.19940 1.19614 0.98238 0.91047 1.39922 0.90053 1.17612 0.91211 0.92469 0.89190 1.21098 1.03510 0.92753 1.05757 1.20434 0.96021 0.96724 0.98467 1.20348 1.01219 0.94649 1.07500 1.19458 0.96534 0.95293 1.01738 1.18863 0.83268 0.82750 0.79618 1.90699 1.66290 1.29824 1.55567 1.46015 1.30610 1.09914 1.52225 1.20046 0.88668 0.91500 0.95604 1.19706 0.98212 0.96361 0.95386 1.20933 0.96902 0.94229 0.99222 1.20429 1.01670 0.93666 0.97567 1.18930 0.96204 0.85980 0.98173 1.18832 0.96356 0.93736 0.90871 1.20391 1.00521 0.91764 0.98543 1.86331 1.76388 1.19401 1.40016 1.23630 0.96647 0.80365 1.04907 1.23628 0.96703 1.00801 0.84385 1.86309 1.76657 1.26250 1.33059 1.21640 0.96478 0.96473 0.96708 0.90494 0.88637 0.88937 0.89252 0.76400 0.90797 0.90582 0.84541 0.84599 0.84433 0.90386 0.86057 0.86091 0.90484 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.79 10.96 55.55 0.61 -20.18 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.10 9.05 -37.73 -0.34 -12.44 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 10 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 14 C 0.56 12.33 7.77 -12.31 -0.10 12.24 16 15 O -0.55 -13.64 16.33 5.32 0.09 -13.55 16 16 N -0.73 -12.19 5.50 -62.42 -0.34 -12.54 16 17 C 0.17 2.31 5.79 -5.20 -0.03 2.28 16 18 C -0.10 -1.13 5.25 -104.63 -0.55 -1.68 16 19 C -0.09 -1.01 9.69 -39.59 -0.38 -1.39 16 20 C -0.11 -1.20 9.96 -39.42 -0.39 -1.59 16 21 C 0.05 0.59 6.49 -39.14 -0.25 0.33 16 22 C 0.05 0.55 6.49 -39.14 -0.25 0.29 16 23 C -0.09 -1.10 9.62 -39.42 -0.38 -1.48 16 24 O -0.31 -3.30 10.42 -32.88 -0.34 -3.64 16 25 C 0.02 0.13 7.26 37.40 0.27 0.41 16 26 C 0.02 0.13 7.26 37.40 0.27 0.40 16 27 O -0.31 -3.10 10.42 -32.88 -0.34 -3.45 16 28 C -0.09 -2.49 8.24 -38.44 -0.32 -2.80 16 29 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 30 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.58 6.38 -52.49 -0.33 1.25 16 33 H 0.40 6.00 6.48 -40.82 -0.26 5.73 16 34 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.13 3.87 5.74 -52.49 -0.30 3.57 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -31.77 367.16 -9.83 -41.60 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.09 Total: 10.64 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -4.90 Total: -18.21 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.27 Total: -32.72 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.60 Total: -20.64 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.77 -9.83 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042346908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.482 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds