Wall clock time and date at job start Tue Mar 31 2020 22:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47105 * 300.00223 * 3 2 1 6 6 H 1.48500 * 109.47163 * 60.00176 * 3 2 1 7 7 C 1.37879 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99640 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00152 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99783 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00235 * 180.02562 * 11 10 9 14 14 O 1.45186 * 109.47384 * 179.97438 * 13 11 10 15 15 C 1.34232 * 117.00492 * 179.97438 * 14 13 11 16 16 O 1.20824 * 119.99458 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00659 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.47592 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 15 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35897 * 117.00481 * 180.02562 * 20 19 18 22 22 C 1.38774 * 120.03441 * 359.72088 * 21 20 19 23 23 C 1.38138 * 119.99122 * 179.74971 * 22 21 20 24 24 C 1.38257 * 120.07872 * 0.53010 * 23 22 21 25 25 C 1.38476 * 120.08328 * 359.74048 * 24 23 22 26 26 F 1.35105 * 119.99874 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.00736 * 359.97438 * 25 24 23 28 28 H 0.96995 * 120.00517 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47667 * 59.99901 * 9 7 2 30 30 H 1.09000 * 109.47025 * 299.99685 * 9 7 2 31 31 H 0.97003 * 119.99886 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.46837 * 59.99845 * 13 11 10 33 33 H 1.08997 * 109.47221 * 300.00622 * 13 11 10 34 34 H 1.09002 * 109.47210 * 59.99728 * 17 15 14 35 35 H 1.09001 * 109.46665 * 299.99987 * 17 15 14 36 36 H 1.09002 * 109.47103 * 59.99616 * 18 17 15 37 37 H 1.08998 * 109.46862 * 300.00428 * 18 17 15 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.07996 * 120.00577 * 0.02562 * 22 21 20 41 41 H 1.07993 * 119.96226 * 180.27412 * 23 22 21 42 42 H 1.07999 * 119.95967 * 179.77480 * 24 23 22 43 43 H 1.07997 * 120.03638 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7541 -4.8833 -0.0033 12 8 0.5617 -5.1049 -0.0026 13 6 2.7334 -6.0287 -0.0038 14 8 2.0075 -7.2861 -0.0038 15 6 2.7386 -8.4119 -0.0047 16 8 3.9452 -8.3486 -0.0050 17 6 2.0546 -9.7547 -0.0053 18 6 3.1083 -10.8639 -0.0057 19 6 2.4138 -12.2272 -0.0057 20 8 3.3980 -13.2632 -0.0054 21 6 2.9451 -14.5445 -0.0060 22 6 1.5810 -14.7991 -0.0009 23 6 1.1216 -16.1019 -0.0066 24 6 2.0195 -17.1532 -0.0064 25 6 3.3815 -16.9029 -0.0058 26 9 4.2573 -17.9315 -0.0051 27 6 3.8455 -15.5991 -0.0060 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6242 -2.5575 0.8880 31 1 3.1569 -3.4353 -0.0022 32 1 3.3600 -5.9713 0.8863 33 1 3.3602 -5.9705 -0.8936 34 1 1.4315 -9.8447 -0.8952 35 1 1.4320 -9.8457 0.8848 36 1 3.7310 -10.7738 0.8844 37 1 3.7312 -10.7730 -0.8955 38 1 1.7908 -12.3176 -0.8956 39 1 1.7912 -12.3178 0.8844 40 1 0.8785 -13.9788 0.0031 41 1 0.0599 -16.2994 -0.0072 42 1 1.6583 -18.1710 -0.0072 43 1 4.9076 -15.4033 -0.0059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050072901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:45 Heat of formation + Delta-G solvation = -191.465579 kcal Electronic energy + Delta-G solvation = -26508.952635 eV Core-core repulsion = 22047.987223 eV Total energy + Delta-G solvation = -4460.965412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.39685 -40.80518 -40.54551 -38.80723 -37.91913 -36.57912 -34.43164 -34.29188 -32.44764 -31.43093 -30.37077 -29.51669 -27.95932 -26.54492 -23.92148 -23.32910 -22.63163 -21.97692 -20.78933 -19.98609 -19.09654 -17.96415 -17.51926 -17.22181 -17.06322 -16.74994 -16.61241 -16.48671 -16.14501 -16.02282 -15.49903 -15.11673 -15.08961 -14.77212 -14.29762 -14.19125 -14.18573 -13.31281 -13.13174 -13.05792 -12.90085 -12.63826 -12.63626 -12.43087 -12.04741 -11.99681 -11.85042 -11.77980 -11.43866 -11.15176 -11.02022 -10.97220 -10.76559 -10.73606 -10.37590 -9.45725 -9.43226 -9.23230 -8.85074 -8.82060 -8.03242 -6.22862 -4.30320 0.58154 0.74453 2.00590 2.13193 2.64887 3.04397 3.12462 3.20224 3.27656 3.30546 3.80630 3.90112 4.14963 4.27835 4.33305 4.34463 4.40311 4.44826 4.51843 4.66834 4.78324 4.79453 4.83632 4.91633 5.04185 5.13404 5.16140 5.18154 5.29350 5.40192 5.49644 5.53684 5.64246 5.70707 5.77416 6.16376 6.26390 6.79187 7.18402 7.26093 7.41780 7.52942 7.60374 7.88411 8.45557 8.67370 8.91923 9.36332 10.87318 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.052361 B = 0.001219 C = 0.001193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.625070 B =22962.528603 C =23460.799708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.535 6.535 13 C 0.049 3.951 14 O -0.329 6.329 15 C 0.462 3.538 16 O -0.509 6.509 17 C -0.110 4.110 18 C -0.110 4.110 19 C 0.059 3.941 20 O -0.308 6.308 21 C 0.163 3.837 22 C -0.220 4.220 23 C -0.049 4.049 24 C -0.194 4.194 25 C 0.139 3.861 26 F -0.134 7.134 27 C -0.192 4.192 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -32.552 -0.015 32.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.244 6.244 15 C 0.305 3.695 16 O -0.398 6.398 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.016 4.016 20 O -0.221 6.221 21 C 0.117 3.883 22 C -0.239 4.239 23 C -0.067 4.067 24 C -0.213 4.213 25 C 0.119 3.881 26 F -0.113 7.113 27 C -0.212 4.212 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.324 -32.447 -0.015 32.734 hybrid contribution 0.965 0.978 -0.001 1.374 sum 5.289 -31.469 -0.016 31.910 Atomic orbital electron populations 1.69977 1.06130 1.27337 1.48746 1.24950 0.94923 0.99505 0.94571 0.86339 0.79833 0.82817 0.77797 1.19585 1.20756 1.20752 1.21243 0.93376 0.90279 1.53455 0.91701 1.19189 0.88172 0.81558 0.98049 1.46373 1.11545 1.05356 1.72341 1.19891 0.89115 0.84007 0.78792 1.90708 1.16325 1.84559 1.49638 1.22877 0.94381 0.80964 1.04635 1.86552 1.40460 1.14074 1.83266 1.23558 0.86525 0.86893 0.72549 1.90692 1.15577 1.88007 1.45500 1.21172 0.99137 0.87622 1.06798 1.21309 0.97857 0.89668 1.05917 1.22865 0.90684 0.85809 1.02241 1.86069 1.36122 1.11984 1.87911 1.18600 0.91785 0.84078 0.93832 1.21394 0.94291 0.98670 1.09554 1.20823 0.99923 0.91177 0.94818 1.21082 0.91182 1.01050 1.08026 1.17302 0.87048 0.83563 1.00172 1.91529 1.68820 1.57313 1.93614 1.20284 1.01099 0.89423 1.10351 0.92405 0.95236 0.95224 0.77399 0.88469 0.88463 0.86959 0.86967 0.89494 0.89489 0.91162 0.91170 0.84515 0.84519 0.84545 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.44 5.43 -5.20 -0.03 6.41 16 10 N -0.71 -14.22 5.55 -61.47 -0.34 -14.57 16 11 C 0.50 9.68 7.91 -10.98 -0.09 9.59 16 12 O -0.53 -12.70 16.50 -14.10 -0.23 -12.93 16 13 C 0.05 0.70 5.94 36.01 0.21 0.92 16 14 O -0.33 -4.74 9.75 -45.91 -0.45 -5.19 16 15 C 0.46 5.37 7.96 36.00 0.29 5.66 16 16 O -0.51 -7.02 15.73 -18.75 -0.29 -7.32 16 17 C -0.11 -0.75 5.81 -27.89 -0.16 -0.91 16 18 C -0.11 -0.74 4.87 -26.74 -0.13 -0.87 16 19 C 0.06 0.32 4.74 37.16 0.18 0.49 16 20 O -0.31 -2.47 10.14 -19.42 -0.20 -2.67 16 21 C 0.16 1.24 6.68 -39.23 -0.26 0.98 16 22 C -0.22 -1.29 9.04 -39.42 -0.36 -1.64 16 23 C -0.05 -0.25 10.04 -39.61 -0.40 -0.65 16 24 C -0.19 -1.17 10.02 -39.49 -0.40 -1.57 16 25 C 0.14 1.06 7.30 -39.44 -0.29 0.77 16 26 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 27 C -0.19 -1.51 9.97 -39.37 -0.39 -1.90 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.64 8.32 -40.82 -0.34 6.30 16 32 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 33 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.07 0.28 7.67 -51.93 -0.40 -0.12 16 39 H 0.07 0.28 7.65 -51.93 -0.40 -0.12 16 40 H 0.14 0.53 6.30 -52.49 -0.33 0.20 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 42 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -34.47 384.58 -7.85 -42.32 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.64 Total: 0.83 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.24 Total: 4.21 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.40 Total: -39.37 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.17 Total: -28.10 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.47 -7.85 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050072901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.149 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds