Wall clock time and date at job start Tue Mar 31 2020 22:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47105 * 300.00223 * 3 2 1 6 6 H 1.48500 * 109.47163 * 60.00176 * 3 2 1 7 7 C 1.37879 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99640 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00152 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99783 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00235 * 180.02562 * 11 10 9 14 14 O 1.45186 * 109.47384 * 179.97438 * 13 11 10 15 15 C 1.34232 * 117.00492 * 179.97438 * 14 13 11 16 16 O 1.20824 * 119.99458 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00659 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.47592 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 15 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35897 * 117.00481 * 180.02562 * 20 19 18 22 22 C 1.38774 * 120.03441 * 359.72088 * 21 20 19 23 23 C 1.38138 * 119.99122 * 179.74971 * 22 21 20 24 24 C 1.38257 * 120.07872 * 0.53010 * 23 22 21 25 25 C 1.38476 * 120.08328 * 359.74048 * 24 23 22 26 26 F 1.35105 * 119.99874 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.00736 * 359.97438 * 25 24 23 28 28 H 0.96995 * 120.00517 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47667 * 59.99901 * 9 7 2 30 30 H 1.09000 * 109.47025 * 299.99685 * 9 7 2 31 31 H 0.97003 * 119.99886 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.46837 * 59.99845 * 13 11 10 33 33 H 1.08997 * 109.47221 * 300.00622 * 13 11 10 34 34 H 1.09002 * 109.47210 * 59.99728 * 17 15 14 35 35 H 1.09001 * 109.46665 * 299.99987 * 17 15 14 36 36 H 1.09002 * 109.47103 * 59.99616 * 18 17 15 37 37 H 1.08998 * 109.46862 * 300.00428 * 18 17 15 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.07996 * 120.00577 * 0.02562 * 22 21 20 41 41 H 1.07993 * 119.96226 * 180.27412 * 23 22 21 42 42 H 1.07999 * 119.95967 * 179.77480 * 24 23 22 43 43 H 1.07997 * 120.03638 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7541 -4.8833 -0.0033 12 8 0.5617 -5.1049 -0.0026 13 6 2.7334 -6.0287 -0.0038 14 8 2.0075 -7.2861 -0.0038 15 6 2.7386 -8.4119 -0.0047 16 8 3.9452 -8.3486 -0.0050 17 6 2.0546 -9.7547 -0.0053 18 6 3.1083 -10.8639 -0.0057 19 6 2.4138 -12.2272 -0.0057 20 8 3.3980 -13.2632 -0.0054 21 6 2.9451 -14.5445 -0.0060 22 6 1.5810 -14.7991 -0.0009 23 6 1.1216 -16.1019 -0.0066 24 6 2.0195 -17.1532 -0.0064 25 6 3.3815 -16.9029 -0.0058 26 9 4.2573 -17.9315 -0.0051 27 6 3.8455 -15.5991 -0.0060 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6242 -2.5575 0.8880 31 1 3.1569 -3.4353 -0.0022 32 1 3.3600 -5.9713 0.8863 33 1 3.3602 -5.9705 -0.8936 34 1 1.4315 -9.8447 -0.8952 35 1 1.4320 -9.8457 0.8848 36 1 3.7310 -10.7738 0.8844 37 1 3.7312 -10.7730 -0.8955 38 1 1.7908 -12.3176 -0.8956 39 1 1.7912 -12.3178 0.8844 40 1 0.8785 -13.9788 0.0031 41 1 0.0599 -16.2994 -0.0072 42 1 1.6583 -18.1710 -0.0072 43 1 4.9076 -15.4033 -0.0059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050072901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:45 Heat of formation + Delta-G solvation = -213.106118 kcal Electronic energy + Delta-G solvation = -26509.891039 eV Core-core repulsion = 22047.987223 eV Total energy + Delta-G solvation = -4461.903817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.98071 -41.75862 -41.10218 -40.37647 -38.41439 -37.64303 -36.17975 -35.02504 -34.41391 -31.91218 -31.03911 -30.69447 -29.04123 -27.93327 -24.82897 -24.26327 -23.77212 -22.58366 -21.64977 -21.55601 -19.64503 -19.18827 -18.83312 -18.05368 -17.86012 -17.59469 -17.28635 -17.21789 -16.99777 -16.99194 -16.69273 -16.63715 -16.26712 -15.87909 -15.28737 -15.16916 -14.71880 -14.64266 -14.32176 -14.09083 -13.86146 -13.65813 -13.64129 -13.33980 -13.18225 -12.99111 -12.91100 -12.75915 -12.50087 -12.31448 -12.22768 -11.89914 -11.89095 -11.69559 -11.57467 -11.46957 -10.90570 -10.83075 -9.92750 -9.92296 -9.32414 -8.29946 -6.46255 0.10125 0.27747 1.11369 1.23041 1.44848 1.45014 1.55861 1.58635 2.02703 2.35392 2.58215 2.61577 3.05656 3.33809 3.54474 3.70702 3.75529 3.89588 3.94359 3.99003 4.02117 4.06490 4.12635 4.14481 4.34659 4.39245 4.41279 4.46518 4.60411 4.99383 4.99826 5.07563 5.08606 5.14428 5.22163 5.22711 5.32687 5.34378 5.42343 5.63104 5.71679 5.82254 6.33856 6.59511 6.63575 6.78998 7.20601 7.35777 8.82352 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.052361 B = 0.001219 C = 0.001193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.625070 B =22962.528603 C =23460.799708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.061 3.939 14 O -0.348 6.348 15 C 0.461 3.539 16 O -0.534 6.534 17 C -0.102 4.102 18 C -0.104 4.104 19 C 0.057 3.943 20 O -0.329 6.329 21 C 0.149 3.851 22 C -0.218 4.218 23 C -0.046 4.046 24 C -0.196 4.196 25 C 0.118 3.882 26 F -0.145 7.145 27 C -0.211 4.211 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.412 0.588 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -33.076 -0.015 33.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.351 5.351 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.016 4.016 14 O -0.264 6.264 15 C 0.306 3.694 16 O -0.424 6.424 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.017 4.017 20 O -0.243 6.243 21 C 0.103 3.897 22 C -0.236 4.236 23 C -0.064 4.064 24 C -0.214 4.214 25 C 0.099 3.901 26 F -0.124 7.124 27 C -0.231 4.231 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.248 0.752 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.171 0.829 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.735 -33.005 -0.015 33.343 hybrid contribution 0.819 1.059 -0.001 1.339 sum 5.554 -31.946 -0.016 32.425 Atomic orbital electron populations 1.70129 1.08211 1.28554 1.49930 1.26020 0.95743 1.03777 0.93840 0.85127 0.79110 0.77439 0.77637 1.17685 1.20533 1.20521 1.21642 0.94412 0.90436 1.52926 0.89661 1.18638 0.88588 0.83804 0.94658 1.46056 1.11699 1.04809 1.72517 1.20721 0.89340 0.84714 0.76752 1.90681 1.18875 1.85306 1.51490 1.22693 0.92516 0.79471 1.06945 1.86560 1.41446 1.14573 1.83793 1.24466 0.86404 0.87263 0.71257 1.90684 1.16747 1.88178 1.46745 1.21319 0.99090 0.84379 1.09076 1.21211 0.97705 0.90686 1.04569 1.22989 0.90316 0.84267 1.04166 1.86028 1.37552 1.12558 1.88196 1.18741 0.92612 0.83749 0.94617 1.21716 0.93752 0.99851 1.08302 1.21222 1.01296 0.90515 0.93351 1.21377 0.90488 1.02424 1.07160 1.17546 0.87791 0.83280 1.01495 1.91494 1.69337 1.57686 1.93873 1.20383 1.01213 0.90074 1.11427 0.92205 0.98888 0.98877 0.75174 0.86035 0.86027 0.84529 0.84537 0.90914 0.90908 0.89180 0.89187 0.82127 0.81433 0.82896 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.98 41.41 29.54 68.60 2.03 43.43 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.56 -29.37 9.28 25.60 0.24 -29.13 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.27 14.09 5.43 85.63 0.46 14.56 16 10 N -0.70 -28.17 5.55 -466.79 -2.59 -30.76 16 11 C 0.50 19.30 7.91 87.66 0.69 20.00 16 12 O -0.58 -28.36 16.50 15.77 0.26 -28.10 16 13 C 0.06 1.65 5.94 71.24 0.42 2.07 16 14 O -0.35 -9.50 9.75 -45.08 -0.44 -9.94 16 15 C 0.46 9.90 7.96 71.24 0.57 10.46 16 16 O -0.53 -13.96 15.73 21.97 0.35 -13.62 16 17 C -0.10 -1.12 5.81 29.84 0.17 -0.95 16 18 C -0.10 -1.23 4.87 30.59 0.15 -1.08 16 19 C 0.06 0.48 4.74 71.98 0.34 0.82 16 20 O -0.33 -5.01 10.14 -92.39 -0.94 -5.94 16 21 C 0.15 2.14 6.68 22.50 0.15 2.29 16 22 C -0.22 -2.00 9.04 22.37 0.20 -1.80 16 23 C -0.05 -0.35 10.04 22.25 0.22 -0.12 16 24 C -0.20 -2.08 10.02 22.33 0.22 -1.85 16 25 C 0.12 1.82 7.30 22.36 0.16 1.98 16 26 F -0.15 -2.55 17.27 44.97 0.78 -1.78 16 27 C -0.21 -3.43 9.97 22.41 0.22 -3.21 16 28 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.41 13.35 8.32 -92.71 -0.77 12.58 16 32 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 33 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 34 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.09 0.41 7.67 -2.39 -0.02 0.39 16 39 H 0.09 0.41 7.65 -2.39 -0.02 0.39 16 40 H 0.16 0.61 6.30 -2.91 -0.02 0.60 16 41 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -78.25 384.58 4.70 -73.55 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.28 Total: 12.90 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 4.70 Total: 14.83 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.30 Total: -85.34 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -0.77 Total: -57.60 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -78.25 4.70 -73.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050072901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.556 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds