Wall clock time and date at job start Tue Mar 31 2020 22:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46591 * 2 1 4 4 N 1.46501 * 109.46533 * 240.00610 * 2 1 3 5 5 S 1.65595 * 120.00281 * 96.25225 * 4 2 1 6 6 O 1.42097 * 106.40392 * 47.28749 * 5 4 2 7 7 O 1.42103 * 106.40349 * 180.21028 * 5 4 2 8 8 N 1.65603 * 107.21649 * 293.75151 * 5 4 2 9 9 C 1.46497 * 120.00157 * 84.58773 * 8 5 4 10 10 C 1.46502 * 119.99822 * 264.58301 * 8 5 4 11 11 C 1.50707 * 109.47103 * 94.68509 * 10 8 5 12 12 H 1.07994 * 119.99526 * 5.02207 * 11 10 8 13 13 C 1.37872 * 120.00047 * 185.02664 * 11 10 8 14 14 N 1.31510 * 120.00331 * 5.16744 * 13 11 10 15 15 Si 1.86803 * 119.99678 * 185.17431 * 13 11 10 16 16 H 1.48495 * 109.47163 * 94.98882 * 15 13 11 17 17 H 1.48501 * 109.46805 * 214.98265 * 15 13 11 18 18 H 1.48493 * 109.47223 * 334.98492 * 15 13 11 19 19 C 1.50696 * 109.47512 * 120.00446 * 2 1 3 20 20 N 1.30805 * 126.24575 * 73.51033 * 19 2 1 21 21 N 1.28679 * 110.28723 * 179.97438 * 20 19 2 22 22 C 1.32304 * 109.48966 * 0.02562 * 21 20 19 23 23 C 1.40812 * 133.47354 * 179.97438 * 22 21 20 24 24 C 1.36019 * 119.23211 * 180.02562 * 23 22 21 25 25 C 1.40547 * 119.74360 * 359.72682 * 24 23 22 26 26 C 1.34953 * 120.36583 * 0.54998 * 25 24 23 27 27 N 1.36061 * 126.24411 * 253.48878 * 19 2 1 28 28 H 1.09006 * 109.47024 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46417 * 299.99391 * 1 2 3 30 30 H 1.08998 * 109.47662 * 59.99647 * 1 2 3 31 31 H 0.97000 * 119.99977 * 276.24122 * 4 2 1 32 32 H 1.08999 * 109.47223 * 90.00023 * 9 8 5 33 33 H 1.09006 * 109.46858 * 210.00050 * 9 8 5 34 34 H 1.08994 * 109.47130 * 329.99460 * 9 8 5 35 35 H 1.08998 * 109.47177 * 214.68299 * 10 8 5 36 36 H 1.09004 * 109.47372 * 334.68787 * 10 8 5 37 37 H 0.97000 * 120.00310 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.38258 * 0.05060 * 23 22 21 39 39 H 1.07998 * 120.12758 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.81927 * 180.28789 * 25 24 23 41 41 H 1.08007 * 119.74471 * 179.73986 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1963 5 16 2.4414 0.1798 -2.5400 6 8 3.2633 1.2460 -2.0851 7 8 2.8627 -0.7652 -3.5140 8 7 1.0586 0.8744 -3.1297 9 6 0.5864 2.1476 -2.5801 10 6 0.3074 0.2156 -4.2012 11 6 -0.7911 -0.6241 -3.6016 12 1 -0.9690 -0.6000 -2.5367 13 6 -1.5688 -1.4230 -4.4126 14 7 -1.2884 -1.5312 -5.6929 15 14 -3.0211 -2.3517 -3.6929 16 1 -4.2611 -1.5577 -3.8858 17 1 -3.1602 -3.6614 -4.3789 18 1 -2.7965 -2.5742 -2.2420 19 6 2.0324 -0.7105 1.2303 20 7 2.0080 -2.0010 1.4424 21 7 2.5156 -2.2738 2.5929 22 6 2.8960 -1.1532 3.1845 23 6 3.4978 -0.8687 4.4253 24 6 3.7705 0.4236 4.7506 25 6 3.4549 1.4518 3.8459 26 6 2.8733 1.1646 2.6625 27 7 2.5947 -0.1266 2.3232 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.0937 -1.6576 -1.2012 32 1 1.0233 2.9714 -3.1445 33 1 -0.5003 2.1937 -2.6521 34 1 0.8848 2.2249 -1.5346 35 1 -0.1283 0.9699 -4.8563 36 1 0.9787 -0.4217 -4.7768 37 1 -1.8358 -2.0930 -6.2636 38 1 3.7404 -1.6674 5.1107 39 1 4.2315 0.6583 5.6986 40 1 3.6752 2.4779 4.1009 41 1 2.6312 1.9630 1.9766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081540346.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:19 Heat of formation + Delta-G solvation = 12.129703 kcal Electronic energy + Delta-G solvation = -28118.042759 eV Core-core repulsion = 24160.871484 eV Total energy + Delta-G solvation = -3957.171275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.63470 -39.21206 -38.48484 -37.71443 -37.10617 -36.96686 -34.84385 -34.45827 -32.19576 -31.22912 -29.81382 -29.57470 -26.75504 -25.33897 -25.15958 -24.30059 -24.16260 -22.12114 -20.58598 -19.39675 -18.73292 -18.63435 -18.36050 -18.03407 -17.68143 -17.36501 -16.89231 -16.47684 -16.13927 -15.79612 -15.28541 -15.16420 -14.99447 -14.63034 -14.07340 -14.01099 -13.67147 -13.49177 -13.46615 -13.38421 -13.28086 -13.23875 -12.99658 -12.91719 -12.81587 -12.63189 -12.45702 -12.42572 -12.36545 -12.15763 -11.91075 -11.63131 -11.60283 -10.85507 -10.60761 -10.53853 -9.77079 -9.11975 -8.14586 -6.26338 -0.42490 -0.29769 0.07545 1.20120 1.42710 1.46120 1.53848 1.55264 1.94982 2.37607 2.44196 2.54168 2.85122 3.17870 3.27463 3.38031 3.47539 3.50191 3.82115 3.93987 4.04633 4.08274 4.11969 4.34373 4.59724 4.69933 4.72719 4.75965 4.86680 4.90999 4.97531 5.05347 5.11129 5.17661 5.28659 5.33657 5.45444 5.50177 5.74754 5.83219 5.86192 6.00974 6.13458 6.87308 7.40962 7.43699 8.93806 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.003873 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.453947 B = 7227.364824 C = 8133.040005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.250 3.750 3 H 0.126 0.874 4 N -1.114 6.114 5 S 2.804 3.196 6 O -0.999 6.999 7 O -1.014 7.014 8 N -0.996 5.996 9 C 0.089 3.911 10 C 0.257 3.743 11 C -0.540 4.540 12 H 0.082 0.918 13 C 0.010 3.990 14 N -0.929 5.929 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.293 1.293 18 H -0.264 1.264 19 C 0.130 3.870 20 N -0.273 5.273 21 N -0.345 5.345 22 C 0.184 3.816 23 C -0.109 4.109 24 C -0.057 4.057 25 C -0.119 4.119 26 C 0.037 3.963 27 N -0.387 5.387 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.421 0.579 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.018 0.982 37 H 0.264 0.736 38 H 0.171 0.829 39 H 0.193 0.807 40 H 0.203 0.797 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 12.763 23.762 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.140 3.860 3 H 0.143 0.857 4 N -0.873 5.873 5 S 2.812 3.188 6 O -0.982 6.982 7 O -0.998 6.998 8 N -0.838 5.838 9 C -0.056 4.056 10 C 0.134 3.866 11 C -0.579 4.579 12 H 0.100 0.900 13 C -0.189 4.189 14 N -0.569 5.569 15 Si 0.780 3.220 16 H -0.196 1.196 17 H -0.219 1.219 18 H -0.188 1.188 19 C -0.135 4.135 20 N -0.112 5.112 21 N -0.191 5.191 22 C -0.065 4.065 23 C -0.130 4.130 24 C -0.081 4.081 25 C -0.140 4.140 26 C -0.085 4.085 27 N -0.066 5.066 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.256 0.744 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.189 0.811 39 H 0.210 0.790 40 H 0.220 0.780 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.826 11.400 22.847 26.706 hybrid contribution -0.974 -0.456 -0.180 1.090 sum 6.852 10.943 22.668 26.087 Atomic orbital electron populations 1.22435 0.91749 1.03904 1.04569 1.19048 0.95324 0.94437 0.77148 0.85687 1.55967 1.83365 1.20456 1.27545 1.01082 0.73341 0.72379 0.72048 1.93522 1.66112 1.56185 1.82429 1.93556 1.82017 1.64169 1.60090 1.57463 1.44705 1.32365 1.49289 1.21668 1.02183 0.83423 0.98369 1.18815 0.90803 0.92002 0.85006 1.21991 1.15718 1.24859 0.95374 0.89980 1.25781 1.00518 0.97477 0.95162 1.70075 1.40235 1.40517 1.06111 0.85593 0.79848 0.77721 0.78818 1.19584 1.21888 1.18807 1.24854 1.05634 0.90498 0.92530 1.74042 1.15229 1.11865 1.10054 1.74861 1.19378 1.22115 1.02701 1.23026 1.03053 0.84400 0.96038 1.20696 1.00450 1.00493 0.91410 1.21826 0.94927 0.90102 1.01284 1.21640 0.97556 1.03608 0.91161 1.22597 1.01495 0.83389 1.00992 1.43812 1.39347 1.09423 1.14061 0.92712 0.89049 0.89315 0.74437 0.92015 0.89877 0.90025 0.95455 0.96392 0.92748 0.81110 0.78990 0.77987 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 9.19 71.98 0.66 -3.73 16 2 C 0.25 6.88 3.07 44.24 0.14 7.02 16 3 H 0.13 2.67 6.31 -2.39 -0.02 2.65 16 4 N -1.11 -38.30 5.51 -172.52 -0.95 -39.25 16 5 S 2.80 109.70 6.08 -56.49 -0.34 109.36 16 6 O -1.00 -37.48 16.69 -128.00 -2.14 -39.61 16 7 O -1.01 -49.73 16.60 -128.00 -2.13 -51.86 16 8 N -1.00 -38.37 3.07 -543.22 -1.67 -40.04 16 9 C 0.09 2.48 8.94 127.77 1.14 3.62 16 10 C 0.26 12.67 5.40 85.63 0.46 13.13 16 11 C -0.54 -27.72 9.38 25.60 0.24 -27.48 16 12 H 0.08 3.88 6.48 -2.91 -0.02 3.86 16 13 C 0.01 0.54 5.45 84.65 0.46 1.00 16 14 N -0.93 -54.62 13.28 21.44 0.28 -54.33 16 15 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 C 0.13 3.87 6.95 137.71 0.96 4.83 16 20 N -0.27 -9.88 12.00 -49.69 -0.60 -10.47 16 21 N -0.34 -11.88 12.31 -55.40 -0.68 -12.56 16 22 C 0.18 4.74 7.92 134.06 1.06 5.80 16 23 C -0.11 -1.61 10.11 22.38 0.23 -1.39 16 24 C -0.06 -0.36 10.07 22.32 0.22 -0.14 16 25 C -0.12 -0.69 9.98 22.08 0.22 -0.47 16 26 C 0.04 0.47 10.80 83.23 0.90 1.37 16 27 N -0.39 -9.06 2.95 -342.88 -1.01 -10.07 16 28 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.09 2.41 5.05 -2.39 -0.01 2.39 16 31 H 0.42 15.33 8.68 -96.75 -0.84 14.49 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.26 8.07 -2.38 -0.02 2.24 16 34 H 0.08 1.72 6.45 -2.39 -0.02 1.70 16 35 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 36 H 0.02 1.03 6.87 -2.39 -0.02 1.01 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.19 -0.45 8.06 -2.91 -0.02 -0.47 16 40 H 0.20 -0.62 8.06 -2.91 -0.02 -0.65 16 41 H 0.20 1.37 7.73 -2.91 -0.02 1.35 16 Total: -1.00 -83.60 357.26 -0.27 -83.87 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.24 Total: 16.37 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.69 Total: 3.57 kcal Atomic # 7 Polarization: -162.10 SS G_CDS: -4.62 Total: -166.73 kcal Atomic # 8 Polarization: -87.21 SS G_CDS: -4.26 Total: -91.47 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 109.70 SS G_CDS: -0.34 Total: 109.36 kcal Total: -83.60 -0.27 -83.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081540346.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.000 kcal (2) G-P(sol) polarization free energy of solvation -83.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds