Wall clock time and date at job start Tue Mar 31 2020 22:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48502 * 109.47362 * 270.00005 * 3 2 1 5 5 H 1.48496 * 109.47141 * 30.00165 * 3 2 1 6 6 H 1.48499 * 109.47248 * 150.00112 * 3 2 1 7 7 C 1.37879 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00292 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99728 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46994 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54033 * 68.37571 * 11 10 9 13 13 O 1.42092 * 110.54274 * 291.62590 * 11 10 9 14 14 N 1.65602 * 104.44782 * 179.97438 * 11 10 9 15 15 C 1.47744 * 125.82236 * 270.00163 * 14 11 10 16 16 C 1.54917 * 104.83735 * 204.25336 * 15 14 11 17 17 C 1.55156 * 101.58085 * 322.90411 * 16 15 14 18 18 C 1.47023 * 125.64547 * 90.00499 * 14 11 10 19 19 H 1.09003 * 109.88490 * 59.32117 * 18 14 11 20 20 C 1.52998 * 109.88065 * 298.30999 * 18 14 11 21 21 O 1.42901 * 109.47046 * 295.31663 * 20 18 14 22 22 C 1.35905 * 116.99604 * 180.02562 * 21 20 18 23 23 C 1.38723 * 120.05884 * 359.72201 * 22 21 20 24 24 C 1.38145 * 119.94323 * 179.77076 * 23 22 21 25 25 C 1.38260 * 120.05692 * 0.50972 * 24 23 22 26 26 C 1.38268 * 120.10972 * 359.74026 * 25 24 23 27 27 C 1.38139 * 120.05510 * 0.02562 * 26 25 24 28 28 H 0.97002 * 119.99880 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47679 * 60.00088 * 9 7 2 30 30 H 1.09003 * 109.47629 * 299.99714 * 9 7 2 31 31 H 1.09002 * 109.46852 * 60.00313 * 10 9 7 32 32 H 1.08993 * 109.47282 * 299.99839 * 10 9 7 33 33 H 1.08999 * 110.43322 * 85.37288 * 15 14 11 34 34 H 1.09002 * 110.38232 * 323.09717 * 15 14 11 35 35 H 1.09000 * 110.99794 * 204.82938 * 16 15 14 36 36 H 1.08994 * 111.03537 * 80.99667 * 16 15 14 37 37 H 1.09004 * 110.72039 * 277.14025 * 17 16 15 38 38 H 1.08997 * 110.71967 * 153.87118 * 17 16 15 39 39 H 1.08999 * 109.47084 * 175.31705 * 20 18 14 40 40 H 1.08998 * 109.47592 * 55.31807 * 20 18 14 41 41 H 1.08001 * 120.02769 * 0.02562 * 23 22 21 42 42 H 1.08006 * 119.97076 * 180.25587 * 24 23 22 43 43 H 1.08001 * 119.94806 * 179.77234 * 25 24 23 44 44 H 1.08008 * 119.96969 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.02914 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 16 5.8355 -2.6367 -0.0014 12 8 6.3351 -2.1459 1.2350 13 8 6.3331 -2.1468 -1.2389 14 7 6.2486 -4.2403 -0.0004 15 6 6.4652 -5.0767 1.1981 16 6 7.3947 -6.2206 0.7208 17 6 6.8569 -6.4821 -0.7109 18 6 6.4615 -5.0710 -1.1947 19 1 7.2626 -4.6492 -1.8017 20 6 5.1715 -5.1443 -2.0141 21 8 4.1641 -5.8184 -1.2573 22 6 2.9483 -5.9695 -1.8454 23 6 2.7277 -5.4740 -3.1223 24 6 1.4923 -5.6331 -3.7197 25 6 0.4730 -6.2761 -3.0421 26 6 0.6888 -6.7663 -1.7674 27 6 1.9238 -6.6140 -1.1675 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 0.8895 30 1 3.8745 -0.6809 -0.8905 31 1 3.6577 -3.1506 -0.8897 32 1 3.6585 -3.1502 0.8903 33 1 5.5185 -5.4814 1.5559 34 1 6.9501 -4.4966 1.9832 35 1 7.2805 -7.1043 1.3486 36 1 8.4344 -5.8945 0.6942 37 1 5.9866 -7.1379 -0.6822 38 1 7.6372 -6.9027 -1.3451 39 1 5.3587 -5.6913 -2.9382 40 1 4.8338 -4.1355 -2.2512 41 1 3.5223 -4.9680 -3.6504 42 1 1.3213 -5.2512 -4.7154 43 1 -0.4932 -6.3963 -3.5094 44 1 -0.1089 -7.2686 -1.2402 45 1 2.0920 -6.9974 -0.1719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113293845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:20 Heat of formation + Delta-G solvation = -82.716315 kcal Electronic energy + Delta-G solvation = -28637.773765 eV Core-core repulsion = 24747.737251 eV Total energy + Delta-G solvation = -3890.036514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25113 -38.69897 -37.00367 -36.73886 -35.60242 -33.93277 -31.51495 -31.34026 -30.99379 -30.71409 -29.35023 -26.00299 -25.72302 -22.77289 -22.28086 -21.93244 -21.29156 -20.62958 -18.73594 -18.29741 -17.60860 -16.91182 -16.51425 -15.98125 -15.91229 -15.51243 -15.36395 -15.19072 -14.42856 -14.32681 -13.83436 -13.79068 -13.53040 -13.34586 -13.27044 -12.94361 -12.90581 -12.75992 -12.33962 -11.88865 -11.79680 -11.72376 -11.53417 -11.51419 -11.40289 -11.25313 -11.20007 -11.19048 -10.89355 -10.85384 -10.64685 -10.43143 -10.14315 -9.72577 -9.40300 -8.91533 -8.86502 -8.64371 -8.12737 -6.14138 -4.14837 0.59542 1.42757 1.53773 2.87119 3.12115 3.26592 3.33954 3.38358 3.88309 4.14175 4.22933 4.30335 4.37116 4.54464 4.76085 4.87772 4.93181 4.99811 5.02016 5.06248 5.17149 5.21228 5.25435 5.41599 5.46221 5.48646 5.54765 5.61338 5.64889 5.69961 5.72135 5.73792 5.84004 6.05591 6.06249 6.18777 6.30748 6.35652 6.41422 6.48131 6.61672 6.82579 6.83246 6.94455 7.43966 7.56540 8.39911 8.88387 9.45467 10.98307 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008115 B = 0.005762 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.636046 B = 4858.065872 C = 7505.036484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.867 3.133 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.578 4.578 11 S 2.599 3.401 12 O -0.961 6.961 13 O -0.964 6.964 14 N -1.009 6.009 15 C 0.118 3.882 16 C -0.126 4.126 17 C -0.123 4.123 18 C 0.157 3.843 19 H 0.101 0.899 20 C 0.031 3.969 21 O -0.303 6.303 22 C 0.129 3.871 23 C -0.207 4.207 24 C -0.078 4.078 25 C -0.158 4.158 26 C -0.081 4.081 27 C -0.149 4.149 28 H 0.266 0.734 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 -17.791 -4.154 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.711 4.711 11 S 2.699 3.301 12 O -0.951 6.951 13 O -0.955 6.955 14 N -0.846 5.846 15 C -0.007 4.007 16 C -0.165 4.165 17 C -0.161 4.161 18 C 0.050 3.950 19 H 0.118 0.882 20 C -0.046 4.046 21 O -0.216 6.216 22 C 0.084 3.916 23 C -0.226 4.226 24 C -0.096 4.096 25 C -0.176 4.176 26 C -0.099 4.099 27 C -0.168 4.168 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.815 -16.921 -3.949 20.466 hybrid contribution -0.435 0.815 -0.314 0.976 sum 10.380 -16.106 -4.263 19.630 Atomic orbital electron populations 1.69882 1.06159 1.27133 1.50116 1.24964 0.94791 0.99009 0.94227 0.86968 0.80763 0.83890 0.79101 1.19705 1.20704 1.18662 1.20820 0.87659 0.94903 1.52001 0.90378 1.19414 1.00070 0.87371 0.97658 1.30368 1.20884 1.08878 1.10963 1.05424 0.79171 0.71381 0.74154 1.93538 1.78971 1.77312 1.45313 1.93530 1.79095 1.77567 1.45286 1.58901 1.85502 1.27913 1.12240 1.22060 0.99472 0.91853 0.87320 1.22723 0.99336 0.98238 0.96217 1.22644 1.01743 0.95085 0.96667 1.21404 0.94211 0.92502 0.86834 0.88171 1.23458 0.88082 0.97684 0.95358 1.86084 1.18569 1.73600 1.43362 1.19001 0.85361 0.95555 0.91657 1.21269 0.99584 1.05942 0.95796 1.20933 0.92399 0.96645 0.99627 1.21042 0.99292 1.01523 0.95744 1.20943 0.95899 0.98158 0.94876 1.20393 0.91974 1.03601 1.00811 0.92440 0.95013 0.95613 0.86085 0.85496 0.91200 0.89980 0.90017 0.90781 0.89350 0.90322 0.90281 0.91428 0.85587 0.85924 0.86091 0.85558 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 9 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 10 C -0.58 -11.43 6.09 37.16 0.23 -11.21 16 11 S 2.60 47.29 5.10 -107.50 -0.55 46.74 16 12 O -0.96 -19.79 17.30 -57.54 -1.00 -20.79 16 13 O -0.96 -19.21 17.47 -57.54 -1.01 -20.22 16 14 N -1.01 -13.92 3.28 -104.18 -0.34 -14.26 16 15 C 0.12 1.34 7.09 -2.35 -0.02 1.32 16 16 C -0.13 -1.05 7.09 -24.58 -0.17 -1.22 16 17 C -0.12 -1.03 6.36 -24.90 -0.16 -1.18 16 18 C 0.16 1.76 3.15 -66.95 -0.21 1.55 16 19 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 20 C 0.03 0.37 4.18 37.16 0.16 0.52 16 21 O -0.30 -3.95 8.91 -19.44 -0.17 -4.12 16 22 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 23 C -0.21 -2.81 9.04 -39.44 -0.36 -3.16 16 24 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 25 C -0.16 -1.97 10.04 -39.56 -0.40 -2.37 16 26 C -0.08 -1.01 10.04 -39.61 -0.40 -1.40 16 27 C -0.15 -2.00 9.99 -39.44 -0.39 -2.39 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 30 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 31 H 0.12 2.30 6.65 -51.92 -0.35 1.95 16 32 H 0.13 2.36 8.14 -51.93 -0.42 1.94 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.77 6.97 -51.93 -0.36 0.41 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 40 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 41 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 45 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -35.17 376.57 -10.94 -46.11 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.72 Total: 2.95 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: -2.93 Total: -32.65 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.43 Total: -40.84 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -2.17 Total: -45.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.55 Total: 46.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.17 -10.94 -46.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113293845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.607 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds