Wall clock time and date at job start Tue Mar 31 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48502 * 109.47362 * 270.00005 * 3 2 1 5 5 H 1.48496 * 109.47141 * 30.00165 * 3 2 1 6 6 H 1.48499 * 109.47248 * 150.00112 * 3 2 1 7 7 C 1.37879 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00292 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99728 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46994 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54033 * 68.37571 * 11 10 9 13 13 O 1.42092 * 110.54274 * 291.62590 * 11 10 9 14 14 N 1.65602 * 104.44782 * 179.97438 * 11 10 9 15 15 C 1.47744 * 125.82236 * 270.00163 * 14 11 10 16 16 C 1.54917 * 104.83735 * 204.25336 * 15 14 11 17 17 C 1.55156 * 101.58085 * 322.90411 * 16 15 14 18 18 C 1.47023 * 125.64547 * 90.00499 * 14 11 10 19 19 H 1.09003 * 109.88490 * 59.32117 * 18 14 11 20 20 C 1.52998 * 109.88065 * 298.30999 * 18 14 11 21 21 O 1.42901 * 109.47046 * 295.31663 * 20 18 14 22 22 C 1.35905 * 116.99604 * 180.02562 * 21 20 18 23 23 C 1.38723 * 120.05884 * 359.72201 * 22 21 20 24 24 C 1.38145 * 119.94323 * 179.77076 * 23 22 21 25 25 C 1.38260 * 120.05692 * 0.50972 * 24 23 22 26 26 C 1.38268 * 120.10972 * 359.74026 * 25 24 23 27 27 C 1.38139 * 120.05510 * 0.02562 * 26 25 24 28 28 H 0.97002 * 119.99880 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47679 * 60.00088 * 9 7 2 30 30 H 1.09003 * 109.47629 * 299.99714 * 9 7 2 31 31 H 1.09002 * 109.46852 * 60.00313 * 10 9 7 32 32 H 1.08993 * 109.47282 * 299.99839 * 10 9 7 33 33 H 1.08999 * 110.43322 * 85.37288 * 15 14 11 34 34 H 1.09002 * 110.38232 * 323.09717 * 15 14 11 35 35 H 1.09000 * 110.99794 * 204.82938 * 16 15 14 36 36 H 1.08994 * 111.03537 * 80.99667 * 16 15 14 37 37 H 1.09004 * 110.72039 * 277.14025 * 17 16 15 38 38 H 1.08997 * 110.71967 * 153.87118 * 17 16 15 39 39 H 1.08999 * 109.47084 * 175.31705 * 20 18 14 40 40 H 1.08998 * 109.47592 * 55.31807 * 20 18 14 41 41 H 1.08001 * 120.02769 * 0.02562 * 23 22 21 42 42 H 1.08006 * 119.97076 * 180.25587 * 24 23 22 43 43 H 1.08001 * 119.94806 * 179.77234 * 25 24 23 44 44 H 1.08008 * 119.96969 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.02914 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 16 5.8355 -2.6367 -0.0014 12 8 6.3351 -2.1459 1.2350 13 8 6.3331 -2.1468 -1.2389 14 7 6.2486 -4.2403 -0.0004 15 6 6.4652 -5.0767 1.1981 16 6 7.3947 -6.2206 0.7208 17 6 6.8569 -6.4821 -0.7109 18 6 6.4615 -5.0710 -1.1947 19 1 7.2626 -4.6492 -1.8017 20 6 5.1715 -5.1443 -2.0141 21 8 4.1641 -5.8184 -1.2573 22 6 2.9483 -5.9695 -1.8454 23 6 2.7277 -5.4740 -3.1223 24 6 1.4923 -5.6331 -3.7197 25 6 0.4730 -6.2761 -3.0421 26 6 0.6888 -6.7663 -1.7674 27 6 1.9238 -6.6140 -1.1675 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 0.8895 30 1 3.8745 -0.6809 -0.8905 31 1 3.6577 -3.1506 -0.8897 32 1 3.6585 -3.1502 0.8903 33 1 5.5185 -5.4814 1.5559 34 1 6.9501 -4.4966 1.9832 35 1 7.2805 -7.1043 1.3486 36 1 8.4344 -5.8945 0.6942 37 1 5.9866 -7.1379 -0.6822 38 1 7.6372 -6.9027 -1.3451 39 1 5.3587 -5.6913 -2.9382 40 1 4.8338 -4.1355 -2.2512 41 1 3.5223 -4.9680 -3.6504 42 1 1.3213 -5.2512 -4.7154 43 1 -0.4932 -6.3963 -3.5094 44 1 -0.1089 -7.2686 -1.2402 45 1 2.0920 -6.9974 -0.1719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113293845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:18 Heat of formation + Delta-G solvation = -106.137403 kcal Electronic energy + Delta-G solvation = -28638.789380 eV Core-core repulsion = 24747.737251 eV Total energy + Delta-G solvation = -3891.052129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21102 -39.61565 -38.34030 -37.89751 -37.15647 -35.95553 -33.53936 -32.30329 -31.91737 -31.67004 -30.30598 -27.95838 -26.64616 -23.83386 -23.39492 -23.13423 -22.52539 -21.76145 -19.99048 -19.54126 -19.15001 -18.48254 -17.63199 -17.25520 -16.91209 -16.66775 -16.61408 -16.44700 -16.29670 -15.46312 -15.30533 -14.94642 -14.75847 -14.63302 -14.31460 -14.12677 -13.90919 -13.85824 -13.77313 -13.37514 -13.27546 -13.20728 -13.12897 -13.04710 -12.70933 -12.45941 -12.31072 -12.23171 -12.03267 -12.00049 -11.81972 -11.74485 -11.57205 -11.48923 -11.36171 -10.87572 -10.01372 -9.91840 -9.12917 -8.39131 -6.45173 -0.86775 0.42478 0.52982 1.28104 1.29785 1.40262 1.58418 2.16757 2.26181 2.66818 2.87924 2.93828 2.96764 3.44570 3.63325 3.79032 3.81954 3.95155 3.98579 4.03548 4.16653 4.21320 4.24879 4.29783 4.44229 4.47547 4.52195 4.55570 4.67252 4.74316 4.87681 4.96506 4.99311 5.03100 5.06058 5.07769 5.10990 5.20798 5.36479 5.40417 5.42642 5.49599 5.52678 5.62685 5.87202 6.14035 6.44825 6.59663 7.18602 8.76695 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008115 B = 0.005762 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.636046 B = 4858.065872 C = 7505.036484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.017 3.983 3 Si 0.923 3.077 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.524 4.524 8 H 0.043 0.957 9 C -0.012 4.012 10 C -0.585 4.585 11 S 2.629 3.371 12 O -0.985 6.985 13 O -0.981 6.981 14 N -1.005 6.005 15 C 0.104 3.896 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.148 3.852 19 H 0.112 0.888 20 C 0.024 3.976 21 O -0.305 6.305 22 C 0.114 3.886 23 C -0.225 4.225 24 C -0.091 4.091 25 C -0.169 4.169 26 C -0.088 4.088 27 C -0.168 4.168 28 H 0.270 0.730 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.254 -18.824 -4.504 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.182 4.182 3 Si 0.745 3.255 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.563 4.563 8 H 0.061 0.939 9 C -0.051 4.051 10 C -0.716 4.716 11 S 2.726 3.274 12 O -0.975 6.975 13 O -0.971 6.971 14 N -0.844 5.844 15 C -0.020 4.020 16 C -0.155 4.155 17 C -0.152 4.152 18 C 0.042 3.958 19 H 0.130 0.870 20 C -0.053 4.053 21 O -0.219 6.219 22 C 0.069 3.931 23 C -0.243 4.243 24 C -0.109 4.109 25 C -0.187 4.187 26 C -0.106 4.106 27 C -0.186 4.186 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.166 0.834 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.790 -17.951 -4.298 22.457 hybrid contribution -1.089 0.994 -0.212 1.490 sum 11.701 -16.957 -4.511 21.090 Atomic orbital electron populations 1.70008 1.07841 1.28395 1.51449 1.25841 0.95638 1.02860 0.93844 0.86057 0.79945 0.79452 0.80016 1.18340 1.19519 1.17454 1.21052 0.89959 0.93699 1.51606 0.93877 1.19348 0.97513 0.90621 0.97665 1.30387 1.23863 1.05959 1.11368 1.04232 0.77576 0.72431 0.73117 1.93503 1.78746 1.78863 1.46393 1.93499 1.78727 1.78961 1.45940 1.58588 1.84395 1.26981 1.14482 1.22381 1.00666 0.92555 0.86402 1.22742 0.98868 0.97618 0.96289 1.22660 1.02554 0.92902 0.97056 1.21787 0.94144 0.93940 0.85936 0.87019 1.23620 0.87973 0.96935 0.96738 1.86068 1.18507 1.73622 1.43701 1.19218 0.85896 0.95986 0.92042 1.21513 1.00344 1.06401 0.96062 1.21278 0.92396 0.96664 1.00602 1.21396 1.00172 1.01209 0.95948 1.21302 0.96243 0.97954 0.95122 1.20678 0.92430 1.04056 1.01446 0.92050 0.94986 0.95208 0.85864 0.85093 0.90829 0.90543 0.87656 0.89865 0.89517 0.87408 0.87478 0.93593 0.84675 0.84205 0.84077 0.83363 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 2 C 0.02 1.00 5.47 84.66 0.46 1.47 16 3 Si 0.92 44.68 27.47 68.60 1.88 46.57 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.52 -30.81 9.66 25.60 0.25 -30.57 16 8 H 0.04 2.75 7.99 -2.91 -0.02 2.73 16 9 C -0.01 -0.62 4.05 29.85 0.12 -0.50 16 10 C -0.58 -23.53 6.09 71.98 0.44 -23.10 16 11 S 2.63 94.25 5.10 -56.49 -0.29 93.96 16 12 O -0.98 -39.99 17.30 -127.65 -2.21 -42.20 16 13 O -0.98 -38.32 17.47 -127.65 -2.23 -40.55 16 14 N -1.01 -26.30 3.28 -483.50 -1.59 -27.89 16 15 C 0.10 2.17 7.09 86.80 0.62 2.79 16 16 C -0.12 -1.53 7.09 31.99 0.23 -1.30 16 17 C -0.11 -1.50 6.36 31.78 0.20 -1.29 16 18 C 0.15 2.98 3.15 45.34 0.14 3.12 16 19 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.02 0.53 4.18 71.98 0.30 0.83 16 21 O -0.31 -7.76 8.91 -92.48 -0.82 -8.59 16 22 C 0.11 3.18 6.69 22.50 0.15 3.33 16 23 C -0.22 -6.09 9.04 22.36 0.20 -5.89 16 24 C -0.09 -2.34 10.04 22.25 0.22 -2.12 16 25 C -0.17 -4.15 10.04 22.28 0.22 -3.93 16 26 C -0.09 -2.17 10.04 22.25 0.22 -1.95 16 27 C -0.17 -4.49 9.99 22.36 0.22 -4.27 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 29 H 0.03 1.57 7.20 -2.38 -0.02 1.55 16 30 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 31 H 0.12 4.83 6.65 -2.39 -0.02 4.82 16 32 H 0.13 5.02 8.14 -2.39 -0.02 5.01 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.68 7.68 -2.39 -0.02 1.67 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.23 6.97 -2.38 -0.02 1.22 16 38 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.75 7.67 -2.39 -0.02 1.74 16 40 H 0.05 1.23 5.93 -2.39 -0.01 1.21 16 41 H 0.14 3.24 6.30 -2.91 -0.02 3.22 16 42 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -76.95 376.57 -0.03 -76.98 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.92 Total: 23.39 kcal Atomic # 6 Polarization: -67.36 SS G_CDS: 4.00 Total: -63.36 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -1.29 Total: -86.21 kcal Atomic # 8 Polarization: -86.08 SS G_CDS: -5.26 Total: -91.34 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: 94.25 SS G_CDS: -0.29 Total: 93.96 kcal Total: -76.95 -0.03 -76.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113293845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.156 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds