Wall clock time and date at job start Tue Mar 31 2020 22:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39666 * 120.12661 * 316.96943 * 3 2 1 5 5 C 1.37956 * 119.95892 * 179.76519 * 4 3 2 6 6 C 1.38291 * 120.21451 * 0.51203 * 5 4 3 7 7 C 1.38824 * 120.24818 * 359.73858 * 6 5 4 8 8 O 1.35905 * 119.98072 * 179.97438 * 7 6 5 9 9 C 1.42904 * 117.00109 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47111 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47163 * 55.00477 * 10 9 8 12 12 O 1.42898 * 109.47132 * 295.00079 * 10 9 8 13 13 C 1.53005 * 109.46837 * 175.00171 * 10 9 8 14 14 O 1.42897 * 109.46833 * 185.00444 * 13 10 9 15 15 C 1.35673 * 116.99876 * 180.02562 * 14 13 10 16 16 C 1.39311 * 119.81926 * 359.72280 * 15 14 13 17 17 C 1.36440 * 120.18761 * 179.75851 * 16 15 14 18 18 C 1.40835 * 119.80948 * 0.51805 * 17 16 15 19 19 C 1.41208 * 120.17956 * 179.71824 * 18 17 16 20 20 H 1.08002 * 120.00493 * 155.15995 * 19 18 17 21 21 C 1.39894 * 120.00095 * 335.16210 * 19 18 17 22 22 N 1.30883 * 119.99622 * 342.15852 * 21 19 18 23 23 Si 1.86802 * 120.00254 * 162.15971 * 21 19 18 24 24 H 1.48494 * 109.47316 * 94.65741 * 23 21 19 25 25 H 1.48496 * 109.47133 * 214.65809 * 23 21 19 26 26 H 1.48504 * 109.46965 * 334.65435 * 23 21 19 27 27 C 1.40837 * 119.64072 * 359.73352 * 18 17 16 28 28 C 1.36432 * 119.81151 * 0.02562 * 27 18 17 29 29 C 1.38480 * 120.03390 * 0.02562 * 7 6 5 30 30 H 1.08001 * 120.01764 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.89334 * 180.23228 * 5 4 3 32 32 H 1.08001 * 119.87504 * 179.76584 * 6 5 4 33 33 H 1.09001 * 109.46846 * 300.00369 * 9 8 7 34 34 H 1.09008 * 109.46529 * 59.99902 * 9 8 7 35 35 H 0.96698 * 114.00076 * 299.99723 * 12 10 9 36 36 H 1.09004 * 109.47170 * 304.99976 * 13 10 9 37 37 H 1.09003 * 109.47018 * 65.00027 * 13 10 9 38 38 H 1.07998 * 119.90762 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.09803 * 180.24940 * 17 16 15 40 40 H 0.97001 * 119.99628 * 179.97438 * 22 21 19 41 41 H 1.07996 * 120.09014 * 179.97438 * 27 18 17 42 42 H 1.08003 * 119.90690 * 179.97438 * 28 27 18 43 43 H 1.08000 * 120.10026 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.8821 0.8243 5 6 4.6489 -0.8819 0.8180 6 6 5.3410 -0.0026 0.0054 7 6 4.6527 0.8821 -0.8136 8 8 5.3383 1.7443 -1.6097 9 6 6.7650 1.6846 -1.5532 10 6 7.3570 2.7205 -2.5109 11 1 6.9537 3.7053 -2.2754 12 8 7.0172 2.3755 -3.8553 13 6 8.8794 2.7435 -2.3595 14 8 9.4226 3.7898 -3.1671 15 6 10.7700 3.9467 -3.1473 16 6 11.5536 3.1087 -2.3571 17 6 12.9097 3.2567 -2.3352 18 6 13.5162 4.2673 -3.1062 19 6 14.9186 4.4312 -3.0848 20 1 15.4214 4.8912 -3.9227 21 6 15.6567 3.9979 -1.9783 22 7 15.0546 3.7694 -0.8389 23 14 17.5016 3.7455 -2.1270 24 1 18.2069 4.9732 -1.6793 25 1 17.9145 2.5997 -1.2773 26 1 17.8501 3.4627 -3.5426 27 6 12.7164 5.1137 -3.8982 28 6 11.3621 4.9491 -3.9126 29 6 3.2679 0.8874 -0.8190 30 1 2.7320 -1.5673 1.4632 31 1 5.1902 -1.5675 1.4531 32 1 6.4210 -0.0045 0.0075 33 1 7.0975 1.8966 -0.5370 34 1 7.0987 0.6885 -1.8443 35 1 7.3447 1.5094 -4.1338 36 1 9.1381 2.9190 -1.3153 37 1 9.2908 1.7863 -2.6799 38 1 11.0866 2.3368 -1.7633 39 1 13.5161 2.6035 -1.7252 40 1 15.5664 3.4686 -0.0717 41 1 13.1738 5.8913 -4.4919 42 1 10.7472 5.5976 -4.5191 43 1 2.7314 1.5755 -1.4554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153306313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:27 Heat of formation + Delta-G solvation = -50.060391 kcal Electronic energy + Delta-G solvation = -26515.514716 eV Core-core repulsion = 22491.450317 eV Total energy + Delta-G solvation = -4024.064399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75150 -39.20300 -38.45684 -37.24502 -36.54518 -36.00576 -33.40786 -31.98277 -31.48512 -30.31470 -29.70072 -29.10618 -26.59838 -24.81604 -24.22545 -22.97607 -22.23327 -21.00624 -20.53202 -19.74543 -17.52990 -17.37957 -17.12698 -17.00516 -16.73818 -16.53032 -16.00420 -15.55003 -15.23497 -14.55316 -14.50923 -14.41367 -14.01849 -14.00425 -13.85865 -13.72418 -13.39041 -13.01613 -12.85680 -12.64806 -12.50033 -12.31684 -12.10389 -11.86402 -11.65241 -11.53393 -11.42364 -11.18138 -11.08428 -10.90277 -10.65157 -10.26741 -9.99353 -9.86266 -9.55519 -9.43972 -9.07796 -8.77386 -7.72838 -7.08575 -6.79508 -4.31563 0.22994 0.85698 2.14582 2.48642 2.55315 2.70445 2.89907 3.04149 3.08010 3.16273 3.37743 3.41912 3.89597 3.91180 4.16650 4.22753 4.47181 4.54696 4.55301 4.57983 4.61786 4.81936 4.87673 4.93843 5.02174 5.11932 5.33877 5.47206 5.60120 5.62148 5.76371 5.80154 5.82369 6.00817 6.03229 6.21437 6.62880 6.82397 6.87650 7.00365 7.02420 7.21121 7.33202 7.48776 7.51084 7.82318 7.93802 8.08279 8.36243 8.57701 8.83950 8.92098 10.15469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.001672 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.945053 B =16744.393124 C =17761.899789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.257 3.743 3 C 0.009 3.991 4 C -0.111 4.111 5 C -0.078 4.078 6 C -0.181 4.181 7 C 0.134 3.866 8 O -0.297 6.297 9 C 0.029 3.971 10 C 0.114 3.886 11 H 0.118 0.882 12 O -0.542 6.542 13 C 0.042 3.958 14 O -0.315 6.315 15 C -0.014 4.014 16 C -0.174 4.174 17 C -0.135 4.135 18 C 0.088 3.912 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.800 5.800 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.196 4.196 28 C -0.109 4.109 29 C -0.104 4.104 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.373 0.627 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.279 0.721 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 -10.392 4.701 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.059 4.059 3 C 0.006 3.994 4 C -0.132 4.132 5 C -0.096 4.096 6 C -0.201 4.201 7 C 0.088 3.912 8 O -0.210 6.210 9 C -0.046 4.046 10 C 0.054 3.946 11 H 0.136 0.864 12 O -0.346 6.346 13 C -0.035 4.035 14 O -0.231 6.231 15 C -0.057 4.057 16 C -0.193 4.193 17 C -0.154 4.154 18 C 0.086 3.914 19 C -0.492 4.492 20 H 0.096 0.904 21 C -0.141 4.141 22 N -0.426 5.426 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.215 4.215 28 C -0.128 4.128 29 C -0.126 4.126 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.220 0.780 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.555 -9.600 4.715 20.557 hybrid contribution 1.939 -0.959 0.521 2.225 sum -15.616 -10.559 5.236 19.564 Atomic orbital electron populations 1.81277 1.11974 1.07686 1.07773 1.25585 0.92514 0.93895 0.93898 1.15633 0.84248 0.99348 1.00160 1.21085 0.94330 0.98777 0.99010 1.20911 0.93438 0.97649 0.97580 1.21597 1.01144 0.98153 0.99190 1.18769 0.91284 0.90198 0.90934 1.86164 1.19643 1.55206 1.59989 1.23549 0.78627 1.00873 1.01565 1.21851 0.92200 0.98745 0.81796 0.86426 1.86687 1.79467 1.40622 1.27837 1.22924 0.92329 0.92123 0.96116 1.85853 1.20675 1.51277 1.65317 1.18568 0.80169 1.02104 1.04821 1.20572 0.95545 1.00913 1.02235 1.20924 0.92460 0.99357 1.02684 1.17608 0.93383 0.89749 0.90682 1.19483 0.91851 1.35310 1.02574 0.90440 1.25880 1.01101 0.92764 0.94404 1.69838 1.38404 1.33700 1.00656 0.86331 0.82291 0.78712 0.79589 1.19603 1.20116 1.18442 1.20615 0.92018 1.02007 1.06909 1.19623 0.94547 0.97883 1.00760 1.20358 0.91264 1.00238 1.00702 0.84798 0.84460 0.84507 0.90270 0.90930 0.77982 0.91903 0.92476 0.88926 0.86156 0.90987 0.88127 0.88401 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.60 18.54 41.84 0.78 -3.82 16 2 C 0.26 2.26 15.33 -22.47 -0.34 1.91 16 3 C 0.01 0.07 5.73 -106.95 -0.61 -0.55 16 4 C -0.11 -0.60 9.75 -39.15 -0.38 -0.98 16 5 C -0.08 -0.38 10.02 -39.67 -0.40 -0.78 16 6 C -0.18 -1.11 9.03 -39.34 -0.36 -1.46 16 7 C 0.13 1.06 6.68 -39.28 -0.26 0.80 16 8 O -0.30 -2.80 10.10 -24.29 -0.25 -3.05 16 9 C 0.03 0.23 4.37 37.16 0.16 0.40 16 10 C 0.11 1.26 3.53 -26.73 -0.09 1.16 16 11 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 12 O -0.54 -6.67 13.27 -49.80 -0.66 -7.34 16 13 C 0.04 0.57 4.36 37.16 0.16 0.73 16 14 O -0.32 -6.01 10.09 -23.57 -0.24 -6.25 16 15 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 16 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 17 C -0.13 -3.35 8.64 -39.25 -0.34 -3.69 16 18 C 0.09 2.28 5.57 -106.80 -0.59 1.69 16 19 C -0.46 -11.93 9.04 -37.83 -0.34 -12.27 16 20 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 21 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 22 N -0.80 -20.03 10.97 55.55 0.61 -19.42 16 23 Si 0.91 18.11 29.60 -169.99 -5.03 13.08 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 27 C -0.20 -4.70 9.74 -39.25 -0.38 -5.08 16 28 C -0.11 -2.47 9.92 -39.83 -0.40 -2.87 16 29 C -0.10 -0.79 9.69 -39.01 -0.38 -1.17 16 30 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.14 0.64 6.28 -52.49 -0.33 0.31 16 33 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.07 0.43 7.66 -51.92 -0.40 0.04 16 35 H 0.37 3.19 9.05 45.56 0.41 3.60 16 36 H 0.06 0.80 7.64 -51.93 -0.40 0.41 16 37 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 38 H 0.09 1.75 6.27 -52.49 -0.33 1.42 16 39 H 0.12 3.07 6.18 -52.49 -0.32 2.74 16 40 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -30.94 379.12 -8.58 -39.52 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.25 Total: 6.72 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -5.26 Total: -25.16 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 1.39 Total: -23.24 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.14 Total: -16.63 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.94 -8.58 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153306313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.537 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds