Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00154 * 3 2 1 5 5 H 1.48498 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46873 * 119.99950 * 3 2 1 7 7 C 1.37881 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47063 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47034 * 180.02562 * 10 9 7 12 12 O 1.42093 * 110.54545 * 68.36990 * 11 10 9 13 13 O 1.42106 * 110.53830 * 291.62312 * 11 10 9 14 14 N 1.65599 * 104.44938 * 179.97438 * 11 10 9 15 15 C 1.46506 * 119.99591 * 62.93166 * 14 11 10 16 16 C 1.53004 * 109.46400 * 163.76673 * 15 14 11 17 17 C 1.52994 * 115.54917 * 294.86802 * 16 15 14 18 18 H 1.09003 * 109.47061 * 55.04090 * 17 16 15 19 19 O 1.42907 * 109.47123 * 175.04056 * 17 16 15 20 20 C 1.50696 * 109.47465 * 295.03843 * 17 16 15 21 21 C 1.38236 * 119.99971 * 99.19965 * 20 17 16 22 22 C 1.38234 * 120.00259 * 180.27725 * 21 20 17 23 23 C 1.38236 * 120.00003 * 359.49049 * 22 21 20 24 24 C 1.38236 * 119.99542 * 0.50948 * 23 22 21 25 25 C 1.38228 * 120.00462 * 279.22040 * 20 17 16 26 26 C 1.52997 * 117.50003 * 80.54758 * 16 15 14 27 27 C 1.53006 * 117.49627 * 149.20335 * 16 15 14 28 28 H 0.96999 * 120.00186 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47307 * 60.00148 * 9 7 2 30 30 H 1.09004 * 109.47094 * 299.99807 * 9 7 2 31 31 H 1.08999 * 109.47006 * 59.99881 * 10 9 7 32 32 H 1.08999 * 109.46506 * 299.99725 * 10 9 7 33 33 H 0.96991 * 120.00062 * 242.93071 * 14 11 10 34 34 H 1.08997 * 109.47508 * 43.76506 * 15 14 11 35 35 H 1.08997 * 109.47183 * 283.76160 * 15 14 11 36 36 H 0.96696 * 113.99800 * 60.00076 * 19 17 16 37 37 H 1.08000 * 119.99719 * 0.02562 * 21 20 17 38 38 H 1.08004 * 120.00350 * 179.72752 * 22 21 20 39 39 H 1.07991 * 120.00268 * 180.23519 * 23 22 21 40 40 H 1.08001 * 120.00150 * 179.71980 * 24 23 22 41 41 H 1.08008 * 119.99611 * 0.02562 * 25 20 17 42 42 H 1.09000 * 117.49699 * 214.99704 * 26 16 15 43 43 H 1.08995 * 117.49945 * 0.02562 * 26 16 15 44 44 H 1.08999 * 117.49538 * 359.97438 * 27 16 15 45 45 H 1.08997 * 117.49717 * 144.99056 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2384 13 8 0.6639 -5.4200 1.2355 14 7 2.5204 -6.3928 -0.0020 15 6 3.4477 -6.4941 1.1278 16 6 4.1545 -7.8505 1.0872 17 6 3.2540 -9.0702 1.2922 18 1 2.4423 -9.0489 0.5651 19 8 4.0206 -10.2633 1.1156 20 6 2.6810 -9.0431 2.6857 21 6 1.3973 -8.5754 2.8962 22 6 0.8737 -8.5451 4.1752 23 6 1.6299 -8.9923 5.2424 24 6 2.9136 -9.4600 5.0320 25 6 3.4391 -9.4854 3.7536 26 6 5.3409 -8.0006 0.1328 27 6 5.5783 -7.9220 1.6429 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6044 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 2.5989 -7.0049 -0.7502 34 1 2.8939 -6.4008 2.0619 35 1 4.1878 -5.6966 1.0630 36 1 4.7617 -10.3492 1.7307 37 1 0.8050 -8.2298 2.0619 38 1 -0.1277 -8.1755 4.3402 39 1 1.2195 -8.9722 6.2411 40 1 3.5061 -9.8053 5.8663 41 1 4.4423 -9.8502 3.5893 42 1 5.4798 -8.9684 -0.3491 43 1 5.6181 -7.1329 -0.4659 44 1 6.0115 -7.0027 2.0370 45 1 5.8733 -8.8381 2.1546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159289493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = -82.049717 kcal Electronic energy + Delta-G solvation = -27703.819858 eV Core-core repulsion = 23813.812250 eV Total energy + Delta-G solvation = -3890.007608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46904 -38.41773 -36.60946 -36.01182 -35.45019 -33.97586 -33.90936 -31.72167 -31.17981 -30.95628 -27.29675 -25.75497 -25.59778 -23.02062 -22.48592 -21.82825 -21.65110 -19.77282 -18.92211 -17.99187 -17.48582 -17.03495 -16.43248 -16.01288 -15.76500 -15.53134 -15.41043 -14.75397 -14.56062 -14.48324 -14.37446 -13.74636 -13.63565 -13.45410 -13.33696 -12.97730 -12.76981 -12.51545 -12.22252 -11.84603 -11.77125 -11.73808 -11.61430 -11.52520 -11.41841 -11.13300 -11.08396 -10.98503 -10.79320 -10.47833 -10.39775 -10.38718 -10.05534 -9.79388 -9.50304 -9.05671 -9.00470 -8.86854 -8.51546 -6.13822 -4.19597 0.77038 1.18476 1.30155 3.02374 3.25891 3.30860 3.32490 3.46125 3.64106 4.03775 4.21685 4.29442 4.33974 4.36818 4.51817 4.60187 4.74493 4.76842 4.78736 4.86880 5.03590 5.21035 5.21517 5.28895 5.36452 5.40350 5.49902 5.60692 5.62840 5.67132 5.68158 5.70950 5.83535 5.87626 5.92816 5.96249 6.31705 6.42257 6.46303 6.46843 6.87125 7.07200 7.22594 7.28024 7.34454 7.78718 8.15855 8.83461 9.45162 10.97176 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002991 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.780005 B = 9358.179621 C = 9832.247515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.591 3.409 12 O -0.967 6.967 13 O -0.964 6.964 14 N -1.126 6.126 15 C 0.156 3.844 16 C -0.163 4.163 17 C 0.185 3.815 18 H 0.114 0.886 19 O -0.550 6.550 20 C -0.114 4.114 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.158 4.158 27 C -0.166 4.166 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.413 0.587 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.370 0.630 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.896 -20.570 6.858 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.723 4.723 11 S 2.689 3.311 12 O -0.957 6.957 13 O -0.953 6.953 14 N -0.883 5.883 15 C 0.029 3.971 16 C -0.165 4.165 17 C 0.126 3.874 18 H 0.132 0.868 19 O -0.356 6.356 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.195 4.195 27 C -0.204 4.204 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.218 0.782 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.332 -20.638 6.554 23.579 hybrid contribution 1.499 1.260 0.226 1.971 sum 10.831 -19.378 6.780 23.212 Atomic orbital electron populations 1.69941 1.06114 1.27334 1.49424 1.25065 0.94973 0.99529 0.94876 0.86530 0.79505 0.82538 0.78699 1.20073 1.21048 1.20083 1.20962 0.93004 0.89801 1.52342 0.92127 1.18955 0.92672 0.90546 0.98876 1.30443 1.13738 1.18172 1.09980 1.05591 0.74694 0.76640 0.74222 1.93558 1.71642 1.85321 1.45226 1.93545 1.71291 1.84912 1.45590 1.55789 1.51694 1.51307 1.29540 1.20698 0.92300 0.94368 0.89735 1.22308 0.90278 0.96466 1.07444 1.20187 0.92032 0.81977 0.93193 0.86823 1.86648 1.46218 1.41384 1.61343 1.20383 0.95052 1.00286 0.95694 1.21127 0.94719 0.97740 0.97906 1.21226 1.00348 0.98818 0.92623 1.21189 0.94646 0.98983 0.99001 1.21056 0.95849 1.00422 0.96702 1.20758 0.99149 1.00534 0.92525 1.23113 0.99767 1.04111 0.92546 1.23012 0.96768 1.03552 0.97053 0.92451 0.94861 0.94819 0.86412 0.86132 0.75332 0.89581 0.91352 0.78177 0.85478 0.85681 0.86152 0.86219 0.86733 0.87682 0.88172 0.87996 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.03 5.96 37.16 0.22 -10.80 16 11 S 2.59 44.54 5.45 -107.50 -0.59 43.95 16 12 O -0.97 -19.66 18.08 -57.54 -1.04 -20.70 16 13 O -0.96 -18.89 17.56 -57.54 -1.01 -19.90 16 14 N -1.13 -13.74 5.72 -10.61 -0.06 -13.80 16 15 C 0.16 1.69 5.79 -4.04 -0.02 1.66 16 16 C -0.16 -1.44 1.55 -154.51 -0.24 -1.68 16 17 C 0.19 1.80 3.27 -27.89 -0.09 1.71 16 18 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 19 O -0.55 -4.95 12.04 -35.23 -0.42 -5.38 16 20 C -0.11 -1.20 4.44 -104.63 -0.46 -1.67 16 21 C -0.10 -1.18 9.20 -39.58 -0.36 -1.55 16 22 C -0.11 -1.29 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 25 C -0.11 -1.01 9.26 -39.59 -0.37 -1.38 16 26 C -0.16 -1.19 9.65 -26.70 -0.26 -1.45 16 27 C -0.17 -1.14 9.54 -26.69 -0.25 -1.40 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 32 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 33 H 0.41 4.35 8.62 -34.47 -0.30 4.05 16 34 H 0.09 1.05 6.85 -51.93 -0.36 0.69 16 35 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.37 2.22 5.75 45.56 0.26 2.49 16 37 H 0.13 1.64 8.04 -52.49 -0.42 1.22 16 38 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.11 0.74 6.25 -52.48 -0.33 0.41 16 42 H 0.10 0.78 7.51 -51.93 -0.39 0.39 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.49 6.23 -51.93 -0.32 0.16 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -35.10 385.69 -11.21 -46.31 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.03 Total: 7.12 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: -3.58 Total: -33.84 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.68 Total: -39.44 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -2.47 Total: -45.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 44.54 SS G_CDS: -0.59 Total: 43.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.10 -11.21 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159289493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.738 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds