Wall clock time and date at job start Tue Mar 31 2020 22:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48499 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47303 * 299.99505 * 3 2 1 6 6 H 1.48503 * 109.47142 * 59.99937 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00519 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99660 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46944 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46960 * 179.97438 * 10 9 7 12 12 O 1.42107 * 110.54260 * 68.37478 * 11 10 9 13 13 O 1.42100 * 110.54589 * 291.62596 * 11 10 9 14 14 N 1.65597 * 104.44830 * 180.02562 * 11 10 9 15 15 C 1.46501 * 120.00036 * 65.42583 * 14 11 10 16 16 H 1.08997 * 109.47270 * 342.17840 * 15 14 11 17 17 C 1.50695 * 109.47138 * 222.17510 * 15 14 11 18 18 C 1.38241 * 120.00418 * 319.72952 * 17 15 14 19 19 C 1.38237 * 120.00156 * 179.80841 * 18 17 15 20 20 C 1.38235 * 119.99669 * 0.42216 * 19 18 17 21 21 C 1.38237 * 120.00317 * 359.80604 * 20 19 18 22 22 C 1.38234 * 119.99810 * 140.00302 * 17 15 14 23 23 C 1.53007 * 109.46625 * 102.17829 * 15 14 11 24 24 H 1.08997 * 110.27291 * 67.55499 * 23 15 14 25 25 C 1.54947 * 110.30609 * 189.74742 * 23 15 14 26 26 C 1.55300 * 100.94042 * 155.35890 * 25 23 15 27 27 C 1.54375 * 102.25577 * 325.86721 * 26 25 23 28 28 O 1.43237 * 107.58907 * 21.35180 * 27 26 25 29 29 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47253 * 59.99758 * 9 7 2 31 31 H 1.08998 * 109.47299 * 299.99811 * 9 7 2 32 32 H 1.09001 * 109.46549 * 60.00094 * 10 9 7 33 33 H 1.08998 * 109.47073 * 300.00077 * 10 9 7 34 34 H 0.97005 * 119.99972 * 245.43110 * 14 11 10 35 35 H 1.07999 * 119.99399 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.99746 * 180.20688 * 19 18 17 37 37 H 1.07996 * 119.99725 * 179.79126 * 20 19 18 38 38 H 1.07998 * 119.99681 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.00194 * 359.97438 * 22 17 15 40 40 H 1.09000 * 111.12247 * 273.27728 * 25 23 15 41 41 H 1.09002 * 111.12532 * 37.43490 * 25 23 15 42 42 H 1.09004 * 110.84360 * 207.67311 * 26 25 23 43 43 H 1.09001 * 111.02180 * 84.14159 * 26 25 23 44 44 H 1.09004 * 109.82920 * 261.84319 * 27 26 25 45 45 H 1.08992 * 109.91174 * 140.91440 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2355 13 8 0.6646 -5.4194 1.2385 14 7 2.5204 -6.3927 0.0020 15 6 3.4127 -6.5284 1.1559 16 1 3.3720 -5.6192 1.7556 17 6 4.8238 -6.7510 0.6762 18 6 5.0638 -7.5756 -0.4071 19 6 6.3579 -7.7766 -0.8496 20 6 7.4129 -7.1599 -0.2033 21 6 7.1734 -6.3391 0.8830 22 6 5.8789 -6.1351 1.3230 23 6 2.9691 -7.7207 2.0061 24 1 3.1309 -8.6523 1.4639 25 6 3.7385 -7.7380 3.3509 26 6 2.7474 -8.5294 4.2473 27 6 1.3770 -8.0806 3.6962 28 8 1.5852 -7.5878 2.3675 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 2.8719 -3.6043 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 2.6220 -6.9821 -0.7618 35 1 4.2398 -8.0606 -0.9094 36 1 6.5450 -8.4181 -1.6980 37 1 8.4242 -7.3196 -0.5468 38 1 7.9977 -5.8577 1.3881 39 1 5.6919 -5.4941 2.1718 40 1 4.6874 -8.2654 3.2538 41 1 3.8899 -6.7273 3.7300 42 1 2.8575 -8.2435 5.2934 43 1 2.8819 -9.6041 4.1245 44 1 0.9672 -7.2893 4.3240 45 1 0.6908 -8.9270 3.6734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171765924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:44 Heat of formation + Delta-G solvation = -99.378493 kcal Electronic energy + Delta-G solvation = -28175.489534 eV Core-core repulsion = 24284.730493 eV Total energy + Delta-G solvation = -3890.759041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18900 -38.87596 -36.38689 -35.56778 -35.17067 -33.83603 -32.24140 -31.22419 -31.09648 -30.81092 -29.32654 -25.55334 -25.34329 -22.96871 -22.18970 -21.69994 -21.56880 -20.70339 -18.86424 -17.71300 -17.07144 -16.68427 -16.44681 -16.06433 -15.92705 -15.19315 -15.17091 -14.87772 -14.73715 -14.51205 -14.24128 -13.71314 -13.57623 -13.32957 -13.22123 -12.87887 -12.49267 -12.43073 -12.07477 -11.72266 -11.68689 -11.59020 -11.41925 -11.33593 -11.23928 -11.19621 -11.07619 -11.00204 -10.95050 -10.88623 -10.33149 -10.32306 -9.83480 -9.56113 -9.31840 -9.10778 -9.01299 -8.84269 -8.47140 -6.08940 -4.14052 0.91092 1.12926 1.20819 3.20689 3.27017 3.34155 3.37667 3.55911 3.80517 4.33253 4.36989 4.41712 4.51293 4.62488 4.70485 4.76927 4.84102 4.90719 4.94519 5.00625 5.14250 5.21045 5.26276 5.28781 5.33366 5.34221 5.55351 5.62427 5.65253 5.72646 5.77936 5.80595 5.81378 5.85139 5.99033 6.04624 6.25449 6.31493 6.43388 6.56372 6.77974 7.08431 7.21702 7.36122 7.42633 7.84505 8.22352 8.89624 9.50393 11.02192 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.003893 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.972425 B = 7190.985844 C = 8428.473122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.595 4.595 11 S 2.590 3.410 12 O -0.971 6.971 13 O -0.938 6.938 14 N -1.114 6.114 15 C 0.200 3.800 16 H 0.100 0.900 17 C -0.087 4.087 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.106 4.106 23 C 0.071 3.929 24 H 0.073 0.927 25 C -0.149 4.149 26 C -0.155 4.155 27 C 0.049 3.951 28 O -0.344 6.344 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.410 0.590 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.223 -19.440 5.327 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.728 4.728 11 S 2.687 3.313 12 O -0.962 6.962 13 O -0.928 6.928 14 N -0.869 5.869 15 C 0.091 3.909 16 H 0.117 0.883 17 C -0.089 4.089 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.125 4.125 23 C 0.011 3.989 24 H 0.090 0.910 25 C -0.187 4.187 26 C -0.193 4.193 27 C -0.028 4.028 28 O -0.263 6.263 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.243 0.757 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.906 -19.321 5.350 23.843 hybrid contribution 1.344 0.912 -0.227 1.640 sum 14.250 -18.409 5.123 23.837 Atomic orbital electron populations 1.69970 1.06092 1.26999 1.49801 1.25065 0.94950 0.99480 0.94995 0.86438 0.79941 0.83303 0.77748 1.19678 1.20808 1.20818 1.21053 0.93058 0.89824 1.51812 0.92073 1.18944 0.92680 0.90550 0.98830 1.30514 1.13764 1.18767 1.09709 1.05727 0.74728 0.76357 0.74522 1.93543 1.71397 1.85428 1.45796 1.93610 1.70458 1.84162 1.44581 1.55925 1.52702 1.52314 1.25928 1.19695 0.85710 0.99029 0.86441 0.88258 1.19885 0.94184 0.98136 0.96705 1.20955 0.97018 0.98074 0.96353 1.21134 0.92624 1.00026 0.99885 1.21182 0.99053 0.97406 0.96152 1.21141 0.96724 0.98574 0.97080 1.21074 0.92260 0.99238 0.99895 1.23352 0.83091 0.97390 0.95042 0.90965 1.23288 0.98998 1.01803 0.94659 1.23119 0.95076 1.00536 1.00535 1.23118 0.96297 0.98692 0.84678 1.88723 1.23403 1.84205 1.29932 0.92632 0.94946 0.94803 0.86714 0.86389 0.75672 0.85947 0.85989 0.86161 0.85880 0.85588 0.89891 0.89910 0.90098 0.90836 0.91068 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.59 -11.85 5.94 37.16 0.22 -11.63 16 11 S 2.59 48.87 5.34 -107.50 -0.57 48.30 16 12 O -0.97 -21.28 18.08 -57.54 -1.04 -22.32 16 13 O -0.94 -20.10 15.81 -65.61 -1.04 -21.13 16 14 N -1.11 -15.55 5.03 -5.88 -0.03 -15.58 16 15 C 0.20 2.43 2.14 -69.08 -0.15 2.29 16 16 H 0.10 1.23 7.04 -51.93 -0.37 0.87 16 17 C -0.09 -0.91 4.61 -104.62 -0.48 -1.39 16 18 C -0.11 -1.01 9.21 -39.58 -0.36 -1.38 16 19 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 20 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.11 -1.01 9.56 -39.58 -0.38 -1.39 16 23 C 0.07 0.83 3.14 -25.70 -0.08 0.75 16 24 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 25 C -0.15 -1.35 6.11 -24.48 -0.15 -1.50 16 26 C -0.15 -1.33 7.02 -24.79 -0.17 -1.50 16 27 C 0.05 0.58 7.79 37.88 0.30 0.87 16 28 O -0.34 -5.20 8.81 -55.01 -0.48 -5.69 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 2.04 7.59 -51.92 -0.39 1.64 16 33 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 34 H 0.41 4.87 7.20 -34.47 -0.25 4.62 16 35 H 0.12 1.03 6.81 -52.49 -0.36 0.68 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 1.05 8.04 -52.49 -0.42 0.63 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.74 7.97 -51.93 -0.41 0.33 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -36.59 380.57 -11.53 -48.12 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.82 Total: 4.07 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -3.00 Total: -31.81 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.71 Total: -41.66 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.56 Total: -49.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 48.87 SS G_CDS: -0.57 Total: 48.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.59 -11.53 -48.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171765924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.255 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds